Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g02070 Coffea canephora HOM05D006624 ORTHO05D008209 3.2e-223 778.1 389 100.0
Dinv25186 Davidia involucrata HOM05D006624 ORTHO05D008209 9.2e-130 467.6 396 60.9
Nitab4.5_0002055g0180 Nicotiana tabacum HOM05D006624 ORTHO05D008209 5.4e-122 441.8 388 57.7
Nitab4.5_0004327g0020 Nicotiana tabacum HOM05D006624 ORTHO05D008209 5.4e-122 441.8 374 59.4
Actinidia10881 Actinidia chinensis HOM05D006624 ORTHO05D008209 1.6e-121 440.3 395 58.2
CSS0000809 Camellia sinensis var. sinensis HOM05D006624 ORTHO05D008209 1.6e-121 440.3 397 57.9
Sopen08g025830 Solanum pennellii HOM05D006624 ORTHO05D008209 1.6e-121 440.3 399 57.4
Solyc08g077250.4 Solanum lycopersicum HOM05D006624 ORTHO05D008209 2.7e-121 439.5 400 56.5
PGSC0003DMG400024215 Solanum tuberosum HOM05D006624 ORTHO05D008209 3.5e-121 439.1 399 56.6
CSS0049781 Camellia sinensis var. sinensis HOM05D006624 ORTHO05D008209 7.8e-121 438.0 397 57.7
CAN.G799.14 Capsicum annuum HOM05D006624 ORTHO05D008209 7.8e-121 438.0 391 58.8
Actinidia31470 Actinidia chinensis HOM05D006624 ORTHO05D008209 3.4e-116 422.5 382 56.3
vmacro14109 Vaccinium macrocarpon HOM05D006624 ORTHO05D008209 3.4e-116 422.5 466 50.9
Gorai.003G180000 Gossypium raimondii HOM05D006624 ORTHO05D008209 4.9e-115 418.7 385 56.1
Rhsim07G0122500 Rhododendron simsii HOM05D006624 ORTHO05D008209 1.4e-114 417.2 389 55.0
TAR629G2579 Trochodendron aralioides HOM05D006624 ORTHO05D008209 1.0e-112 411.0 377 56.8
Gohir.A03G002600 Gossypium hirsutum HOM05D006624 ORTHO05D008209 6.6e-112 408.3 394 55.3
GSVIVG01013232001 Vitis vinifera HOM05D006624 ORTHO05D008209 7.3e-111 404.8 391 55.5
CiPaw.11G087800 Carya illinoinensis HOM05D006624 ORTHO05D008209 4.0e-109 399.1 386 54.9
Duzib068G0530 Durio zibethinus HOM05D006624 ORTHO05D008209 1.5e-108 397.1 383 54.8
Sabra01G0115200 Salix brachista HOM05D006624 ORTHO05D008209 4.4e-108 395.6 383 53.5
HanXRQChr08g0227961 Helianthus annuus HOM05D006624 ORTHO05D008209 1.3e-107 394.0 390 53.6
Ciclev10031769m.g Citrus clementina HOM05D006624 ORTHO05D008209 3.8e-107 392.5 353 55.0
TWI15G0738 Tripterygium wilfordii HOM05D006624 ORTHO05D008209 6.4e-107 391.7 362 55.0
Migut.N01377 Erythranthe guttata HOM05D006624 ORTHO05D008209 1.4e-106 390.6 336 57.1
MSTRG.12153 Avicennia marina HOM05D006624 ORTHO05D008209 2.4e-106 389.8 372 55.6
Haze_08295 Corylus avellana HOM05D006624 ORTHO05D008209 3.5e-105 386.0 359 55.2
COL.COLO4_17108 Corchorus olitorius HOM05D000087 ORTHO05D008209 2.3e-104 383.3 382 53.4
QL12p007008 Quercus lobata HOM05D006624 ORTHO05D008209 2.3e-104 383.3 379 51.5
ECA233G2124 Erigeron canadensis HOM05D006624 ORTHO05D008209 1.1e-103 380.9 384 51.3
Potri.001G146500 Populus trichocarpa HOM05D006624 ORTHO05D008209 1.5e-103 380.6 367 54.0
Thecc.03G233800 Theobroma cacao HOM05D006624 ORTHO05D008209 3.6e-102 375.9 382 53.9
Aqoxy7G00644 Aquilegia oxysepala HOM05D006624 ORTHO05D008209 3.1e-101 372.9 352 54.0
SGA_v2.0_scaffold36G14316 Striga asiatica HOM05D006624 ORTHO05D008209 3.4e-100 369.4 380 51.3
Prupe.5G046100 Prunus persica HOM05D006624 ORTHO05D008209 1.3e-99 367.5 376 52.9
Gohir.D03G169701 Gossypium hirsutum HOM05D006624 ORTHO05D008209 6.4e-99 365.2 304 57.6
PGR042G3682 Punica granatum HOM05D006624 ORTHO05D008209 8.4e-99 364.8 380 50.8
DCAR_031785 Daucus carota HOM05D006624 ORTHO05D008209 4.2e-98 362.5 384 51.3
MD06G1040000 Malus domestica HOM05D006624 ORTHO05D008209 4.2e-98 362.5 385 50.9
Sc01g0007740 Simmondsia chinensis HOM05D006624 ORTHO05D008209 2.1e-97 360.1 388 50.8
Atru.chr6.1770 Acer truncatum HOM05D006624 ORTHO05D008209 1.0e-96 357.8 381 51.2
Eucgr.E00310 Eucalyptus grandis HOM05D006624 ORTHO05D008209 3.0e-96 356.3 376 49.7
RcHm_v2.0_Chr7g0208351 Rosa chinensis HOM05D006624 ORTHO05D008209 5.1e-96 355.5 389 50.6
Sed0020690 Sechium edule HOM05D006624 ORTHO05D008209 1.1e-95 354.4 381 49.3
Manes.17G019300 Manihot esculenta HOM05D006624 ORTHO05D008209 3.3e-95 352.8 387 49.9
QL12p007057 Quercus lobata HOM05D006624 ORTHO05D008209 7.4e-95 351.7 386 49.5
FvH4_5g21210 Fragaria vesca HOM05D006624 ORTHO05D008209 9.6e-95 351.3 385 49.6
Medtr5g014010 Medicago truncatula HOM05D006624 ORTHO05D008209 2.1e-94 350.1 378 50.8
THA.LOC104827742 Tarenaya hassleriana HOM05D006624 ORTHO05D008209 3.7e-94 349.4 368 50.5
FAN04G0639 Fragaria x ananassa HOM05D006624 ORTHO05D008209 1.8e-93 347.1 385 49.6
TPR.G21431 Trifolium pratense HOM05D006624 ORTHO05D008209 2.4e-93 346.7 354 54.0
CsaV3_3G049520 Cucumis sativus L. HOM05D006624 ORTHO05D008209 4.0e-93 345.9 379 51.2
Aa31LG9G6360 Aethionema arabicum HOM05D006624 ORTHO05D008209 9.0e-93 344.7 364 49.7
Psat2g174640 Pisum sativum HOM05D006624 ORTHO05D008209 1.2e-92 344.4 334 54.2
Hund14427 Selenicereus undatus HOM05D006624 ORTHO05D008209 1.2e-92 344.4 371 50.4
Ah.07g200030 Amaranthus hybridus HOM05D006624 ORTHO05D008209 3.4e-92 342.8 358 51.7
ClCG09G012360 Citrullus lanatus HOM05D006624 ORTHO05D008209 2.9e-91 339.7 395 49.4
PSO339G2002 Papaver somniferum HOM05D006624 ORTHO05D008209 2.9e-91 339.7 388 49.0
BcaC06g31468 Brassica carinata HOM05D006624 ORTHO05D008209 4.9e-91 339.0 362 50.6
FAN08G0242 Fragaria x ananassa HOM05D006624 ORTHO05D008209 1.9e-90 337.0 407 47.2
Glyma.11G041200 Glycine max HOM05D006624 ORTHO05D008209 3.2e-90 336.3 364 49.7
PSO565G0001 Papaver somniferum HOM05D006624 ORTHO05D008209 5.5e-90 335.5 386 49.2
EL10Ac5g12192 Beta vulgaris HOM05D006624 ORTHO05D008209 9.3e-90 334.7 355 51.0
Lj2g0021367 Lotus japonicus HOM05D006624 ORTHO05D008209 1.2e-89 334.3 357 50.1
Lsat_1_v5_gn_6_68241 Lactuca sativa HOM05D006624 ORTHO05D008209 1.6e-89 334.0 392 48.5
BolC7t43526H Brassica oleracea HOM05D006624 ORTHO05D008209 4.6e-89 332.4 373 48.3
BcaC06g34373 Brassica carinata HOM05D006624 ORTHO05D008209 1.3e-88 330.9 372 47.8
Glyma.01G200900 Glycine max HOM05D006624 ORTHO05D008209 2.3e-88 330.1 388 47.2
Phvul.002G004700 Phaseolus vulgaris HOM05D006624 ORTHO05D008209 2.3e-88 330.1 337 51.6
BraA06t27456Z Brassica rapa HOM05D006624 ORTHO05D008209 3.0e-88 329.7 372 47.8
A06p45890 Brassica napus HOM05D006624 ORTHO05D008209 3.3e-87 326.2 372 48.1
C07p29750 Brassica napus HOM05D006624 ORTHO05D008209 3.3e-87 326.2 384 46.4
AUR62007233 Chenopodium quinoa HOM05D006624 ORTHO05D008209 1.3e-86 324.3 386 48.4
AUR62018767 Chenopodium quinoa HOM05D006624 ORTHO05D008209 1.3e-86 324.3 359 49.9
AL8G11790 Arabidopsis lyrata HOM05D006624 ORTHO05D008209 2.1e-86 323.6 382 47.4
VMungo1215G2954 Vigna mungo HOM05D006624 ORTHO05D008209 2.1e-86 323.6 337 50.7
AT5G46560 Arabidopsis thaliana HOM05D006624 ORTHO05D008209 2.8e-86 323.2 389 45.8
Lalb_Chr16g0379211 Lupinus albus HOM05D006624 ORTHO05D008209 3.1e-85 319.7 358 47.8
SalBow6G4456 Salvia bowleyana HOM05D006624 ORTHO05D008209 7.6e-84 315.1 483 38.9
Carub.0008s0136 Capsella rubella HOM05D006624 ORTHO05D008209 5.5e-82 308.9 356 45.5
arahy.Tifrunner.gnm1.ann1.A7V6P3 Arachis hypogaea HOM05D006624 ORTHO05D008209 1.6e-81 307.4 362 48.1
arahy.Tifrunner.gnm1.ann1.76B0S0 Arachis hypogaea HOM05D006624 ORTHO05D008209 2.1e-81 307.0 366 47.8
MELO3C003374.2 Cucumis melo HOM05D006624 ORTHO05D008209 4.6e-81 305.8 375 48.0
FAN18G2886 Fragaria x ananassa HOM05D006624 ORTHO05D008209 4.6e-81 305.8 419 44.6
Lj2A246G27 Lonicera japonica HOM05D006624 ORTHO05D008209 2.4e-77 293.5 293 51.9
ATR1101G009 Amborella trichopoda HOM05D006624 ORTHO05D008209 5.0e-75 285.8 342 43.6
Thhalv10000965m.g Eutrema salsugineum HOM05D006624 ORTHO05D008209 1.3e-70 271.2 321 46.7
MBI04_g31972_MAGBIO Magnolia biondii HOM05D006624 ORTHO05D008209 1.7e-70 270.8 431 40.1
CDE04G3153 Ceratophyllum demersum HOM05D006624 ORTHO05D008209 1.0e-67 261.5 324 43.2
Peaxi162Scf00084g00925 Petunia axillaris HOM05D006624 ORTHO05D008209 2.9e-67 260.0 219 58.0
Cpa.g.sc6.412 Carica papaya HOM05D006624 ORTHO05D008209 8.5e-67 258.5 245 53.9
Zm00001eb000170 Zea mays HOM05D006624 ORTHO05D008209 5.1e-64 249.2 351 39.3
QL12p007029 Quercus lobata HOM05D006624 ORTHO05D008209 7.0e-61 238.8 266 46.2
Hma1.2p1_3049F.1_g332130 Hydrangea macrophylla HOM05D006624 ORTHO05D008209 4.7e-57 226.1 299 44.8
Ca_24634_v3 Cicer arietinum L. HOM05D006624 ORTHO05D008209 1.3e-54 218.0 171 60.2
FAN13G3188 Fragaria x ananassa HOM05D006624 ORTHO05D008209 2.8e-54 216.9 202 54.5
Mapoly0037s0054 Marchantia polymorpha HOM05D006624 ORTHO05D008209 6.3e-54 215.7 361 37.4
Gorai.001G276000 Gossypium raimondii HOM05D006624 ORTHO05D008209 3.1e-53 213.4 273 45.8
SEGI_35168 Sequoiadendron giganteum HOM05D006624 ORTHO05D008209 2.0e-52 210.7 302 37.7
Pp3c26_11390 Physcomitrium patens HOM05D006624 ORTHO05D008209 4.2e-50 203.0 327 37.6
Gorai.004G193000 Gossypium raimondii HOM05D006624 ORTHO05D008209 1.8e-48 197.6 241 46.9
CARHR175020 Cardamine hirsuta HOM05D006624 ORTHO05D008209 4.4e-47 193.0 248 43.5
Hma1.2p1_3049F.1_g332131 Hydrangea macrophylla HOM05D006624 ORTHO05D008209 7.0e-45 185.7 132 68.9
Hma1.2p1_0414F.1_g147760 Hydrangea macrophylla HOM05D006624 ORTHO05D008209 1.8e-40 171.0 160 59.4
CBR_g18557 Chara braunii HOM05D006624 ORTHO05D008209 2.4e-37 160.6 248 35.1
Gorai.013G102100 Gossypium raimondii HOM05D006624 ORTHO05D008209 5.4e-37 159.5 343 35.6
SpUn0632_0010 Schrenkiella parvula HOM05D006624 ORTHO05D008209 1.4e-32 144.8 227 39.6
Peaxi162Scf00084g00918 Petunia axillaris HOM05D006624 ORTHO05D008209 4.1e-29 133.3 132 55.3
Duzib084G0908 Durio zibethinus HOM05D006624 ORTHO05D008209 1.0e-27 128.6 129 49.6
AagrBONN_evm.TU.Sc2ySwM_362.2673 Anthoceros agrestis HOM05D006624 ORTHO05D008209 2.3e-24 117.5 234 30.8
Gorai.004G213700 Gossypium raimondii HOM05D006624 ORTHO05D008209 8.3e-22 109.0 254 34.3
arahy.Tifrunner.gnm1.ann1.PE2WYP Arachis hypogaea HOM05D006624 ORTHO05D008209 4.7e-17 93.2 200 37.0
Os03g0100050 Oryza sativa ssp. japonica HOM05D006624 ORTHO05D008209 5.2e-16 89.7 126 42.9
Gorai.007G312600 Gossypium raimondii HOM05D000724 ORTHO05D011687 4.4e-15 86.7 277 28.9
Gorai.001G079600 Gossypium raimondii HOM05D006624 ORTHO05D008209 1.7e-14 84.7 85 43.5
Gohir.D07G137300 Gossypium hirsutum HOM05D006624 ORTHO05D008209 4.9e-14 83.2 70 51.4
Gohir.D08G202450 Gossypium hirsutum HOM05D006624 ORTHO05D008209 8.3e-14 82.4 84 48.8
Gohir.D11G288800 Gossypium hirsutum HOM05D000724 ORTHO05D011687 8.3e-14 82.4 92 43.5
Gohir.D07G137350 Gossypium hirsutum HOM05D006624 ORTHO05D008209 6.8e-08 62.8 88 48.9
Gohir.D08G202425 Gossypium hirsutum HOM05D006624 ORTHO05D008209 8.9e-08 62.4 88 48.9
Gohir.D11G288766 Gossypium hirsutum HOM05D006624 ORTHO05D008209 2.0e-07 61.2 81 50.6
Gohir.D07G075451 Gossypium hirsutum HOM05D006624 ORTHO05D008209 4.4e-07 60.1 81 49.4
CBR_g30426 Chara braunii HOM05D006624 ORTHO05D008209 8.4e-06 55.8 57 47.4


User provided reference genes

Program Settings