Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g01990 Coffea canephora HOM05D006197 ORTHO05D007718 1.2e-32 142.5 67 100.0
Cc08_g01810 Coffea canephora HOM05D006197 ORTHO05D007718 2.6e-32 141.4 67 98.5
Cc00_g23310 Coffea canephora HOM05D006197 ORTHO05D007718 3.4e-32 141.0 67 97.0
Cc00_g26570 Coffea canephora HOM05D006197 ORTHO05D007718 5.8e-32 140.2 67 97.0
Cc00_g31810 Coffea canephora HOM05D006197 ORTHO05D007718 1.7e-31 138.7 67 95.5
Cc08_g02050 Coffea canephora HOM05D006197 ORTHO05D007718 2.9e-31 137.9 67 97.0
Cc00_g30230 Coffea canephora HOM05D006197 ORTHO05D007718 6.4e-31 136.7 67 95.5
Nitab4.5_0006693g0020 Nicotiana tabacum HOM05D006197 ORTHO05D007718 7.8e-29 129.8 67 89.6
PGSC0003DMG400024214 Solanum tuberosum HOM05D006197 ORTHO05D007718 7.8e-29 129.8 67 88.1
Solyc08g077280.1 Solanum lycopersicum HOM05D006197 ORTHO05D007718 1.3e-28 129.0 67 86.6
Sopen05g026900 Solanum pennellii HOM05D006197 ORTHO05D007718 1.3e-28 129.0 67 86.6
Sopen08g025860 Solanum pennellii HOM05D006197 ORTHO05D007718 1.3e-28 129.0 67 86.6
Nitab4.5_0002055g0120 Nicotiana tabacum HOM05D006197 ORTHO05D007718 1.1e-27 125.9 67 88.1
Migut.N01790 Erythranthe guttata HOM05D006197 ORTHO05D007718 3.3e-27 124.4 67 85.1
Actinidia03393 Actinidia chinensis HOM05D004955 ORTHO05D005965 7.3e-27 123.2 67 83.6
CSS0031892 Camellia sinensis var. sinensis HOM05D006197 ORTHO05D007718 1.6e-26 122.1 67 83.6
CSS0033989 Camellia sinensis var. sinensis HOM05D006197 ORTHO05D007718 1.6e-26 122.1 67 83.6
CSS0037645 Camellia sinensis var. sinensis HOM05D006197 ORTHO05D007718 1.6e-26 122.1 67 83.6
Lsat_1_v5_gn_6_66400 Lactuca sativa HOM05D006197 ORTHO05D007718 3.6e-26 120.9 67 83.6
Hma1.2p1_0311F.1_g121310 Hydrangea macrophylla HOM05D006197 ORTHO05D007718 8.1e-26 119.8 67 85.1
SalBow1G7863 Salvia bowleyana HOM05D006197 ORTHO05D007718 1.8e-25 118.6 67 86.6
MD16G1269400 Malus domestica HOM05D006197 ORTHO05D007718 2.4e-25 118.2 67 85.1
GSVIVG01013230001 Vitis vinifera HOM05D006197 ORTHO05D007718 3.1e-25 117.9 67 83.6
HanXRQChr08g0234831 Helianthus annuus HOM05D006197 ORTHO05D007718 5.3e-25 117.1 67 83.6
Cc08_g01910 Coffea canephora HOM05D006197 ORTHO05D007718 9.0e-25 116.3 59 91.5
Potri.001G146700 Populus trichocarpa HOM05D006197 ORTHO05D007718 1.2e-24 115.9 67 80.6
Dinv28915 Davidia involucrata HOM05D006197 ORTHO05D007718 1.5e-24 115.5 67 82.1
Oeu014592.2 Olea europaea HOM05D006197 ORTHO05D007718 1.5e-24 115.5 67 83.6
PGR042G3581 Punica granatum HOM05D006197 ORTHO05D007718 2.0e-24 115.2 67 80.6
ECA240G0414 Erigeron canadensis HOM05D006197 ORTHO05D007718 2.6e-24 114.8 67 80.6
Duzib068G0126 Durio zibethinus HOM05D006197 ORTHO05D007718 4.5e-24 114.0 67 80.6
Peaxi162Scf00084g00099 Petunia axillaris HOM05D006197 ORTHO05D007718 4.5e-24 114.0 64 84.4
Duzib205G0278 Durio zibethinus HOM05D006197 ORTHO05D007718 5.8e-24 113.6 67 80.6
Prupe.5G046200 Prunus persica HOM05D006197 ORTHO05D007718 5.8e-24 113.6 67 82.1
CiPaw.11G087500 Carya illinoinensis HOM05D006197 ORTHO05D007718 7.6e-24 113.2 67 82.1
Gohir.A04G000300 Gossypium hirsutum HOM05D006197 ORTHO05D007718 7.6e-24 113.2 67 80.6
Gohir.D08G180000 Gossypium hirsutum HOM05D006197 ORTHO05D007718 7.6e-24 113.2 67 80.6
Gorai.004G188500 Gossypium raimondii HOM05D006197 ORTHO05D007718 7.6e-24 113.2 67 80.6
EL10Ac5g12195 Beta vulgaris HOM05D006197 ORTHO05D007718 9.9e-24 112.8 67 77.6
Haze_08298 Corylus avellana HOM05D006197 ORTHO05D007718 9.9e-24 112.8 67 82.1
FAN04G1051 Fragaria x ananassa HOM05D006197 ORTHO05D007718 9.9e-24 112.8 67 82.1
FAN08G0099 Fragaria x ananassa HOM05D006197 ORTHO05D007718 9.9e-24 112.8 67 82.1
FAN18G0540 Fragaria x ananassa HOM05D006197 ORTHO05D007718 9.9e-24 112.8 67 82.1
Oeu006551.1 Olea europaea HOM05D006197 ORTHO05D007718 9.9e-24 112.8 67 80.6
RcHm_v2.0_Chr7g0208331 Rosa chinensis HOM05D006197 ORTHO05D007718 1.3e-23 112.5 67 82.1
Sabra01G0115400 Salix brachista HOM05D006197 ORTHO05D007718 1.3e-23 112.5 67 79.1
Atru.chr6.1773 Acer truncatum HOM05D006197 ORTHO05D007718 1.7e-23 112.1 67 79.1
Dinv25183 Davidia involucrata HOM05D002285 ORTHO05D009255 2.9e-23 111.3 67 79.1
Eucgr.E00313 Eucalyptus grandis HOM05D006197 ORTHO05D007718 2.9e-23 111.3 67 79.1
Gohir.A08G159600 Gossypium hirsutum HOM05D006197 ORTHO05D007718 2.9e-23 111.3 67 79.1
Ciclev10033154m.g Citrus clementina HOM05D006197 ORTHO05D007718 3.8e-23 110.9 67 77.6
AUR62007231 Chenopodium quinoa HOM05D006197 ORTHO05D007718 4.9e-23 110.5 67 77.6
AUR62018769 Chenopodium quinoa HOM05D006197 ORTHO05D007718 4.9e-23 110.5 67 77.6
Thecc.03G234100 Theobroma cacao HOM05D006197 ORTHO05D007718 4.9e-23 110.5 67 79.1
Ah.12g053650 Amaranthus hybridus HOM05D006197 ORTHO05D007718 6.4e-23 110.2 67 74.6
Cfa012386 Carpinus fangiana HOM05D006197 ORTHO05D007718 6.4e-23 110.2 67 80.6
CANSAT64G2368 Cannabis sativa HOM05D006197 ORTHO05D007718 8.4e-23 109.8 67 79.1
Cpa.g.sc6.409 Carica papaya HOM05D006197 ORTHO05D007718 1.1e-22 109.4 67 77.6
Gorai.008G229000 Gossypium raimondii HOM05D006197 ORTHO05D007718 1.1e-22 109.4 67 79.1
Rhsim11G0011100 Rhododendron simsii HOM05D006197 ORTHO05D007718 1.4e-22 109.0 67 74.6
unitig_747.g21291 Utricularia gibba HOM05D006197 ORTHO05D007718 1.4e-22 109.0 67 71.6
Nn1g03717 Nelumbo nucifera HOM05D006197 ORTHO05D007718 1.9e-22 108.6 63 79.4
FAN13G1034 Fragaria x ananassa HOM05D006197 ORTHO05D007718 2.4e-22 108.2 64 81.2
TWI81G0993 Tripterygium wilfordii HOM05D006197 ORTHO05D007718 2.4e-22 108.2 67 76.1
MBI11_g07528_MAGBIO Magnolia biondii HOM05D006197 ORTHO05D007718 3.2e-22 107.8 67 74.6
THA.LOC104819961 Tarenaya hassleriana HOM05D006197 ORTHO05D007718 3.2e-22 107.8 67 74.6
Lj2g0021118 Lotus japonicus HOM05D006197 ORTHO05D007718 4.2e-22 107.5 67 76.1
Manes.15G173000 Manihot esculenta HOM05D006197 ORTHO05D007718 4.2e-22 107.5 67 74.6
COL.COLO4_17110 Corchorus olitorius HOM05D006197 ORTHO05D007718 5.4e-22 107.1 67 76.1
Sp5g03300 Schrenkiella parvula HOM05D006197 ORTHO05D007718 5.4e-22 107.1 67 76.1
Sed0016057 Sechium edule HOM05D006197 ORTHO05D007718 5.4e-22 107.1 67 73.1
MELO3C003373.2 Cucumis melo HOM05D006197 ORTHO05D007718 9.3e-22 106.3 67 71.6
DCAR_008300 Daucus carota HOM05D006197 ORTHO05D007718 9.3e-22 106.3 67 76.1
AL5G41940 Arabidopsis lyrata HOM05D006197 ORTHO05D007718 1.2e-21 105.9 67 74.6
AT3G59840 Arabidopsis thaliana HOM05D006197 ORTHO05D007718 1.2e-21 105.9 67 74.6
BcaC07g40556 Brassica carinata HOM05D006197 ORTHO05D007718 1.2e-21 105.9 67 74.6
BcaC08g45013 Brassica carinata HOM05D006197 ORTHO05D007718 1.2e-21 105.9 67 74.6
A07p24860 Brassica napus HOM05D006197 ORTHO05D007718 1.2e-21 105.9 67 74.6
A09p52120 Brassica napus HOM05D006197 ORTHO05D007718 1.2e-21 105.9 67 74.6
BolC6t37808H Brassica oleracea HOM05D006197 ORTHO05D007718 1.2e-21 105.9 67 74.6
BraA07t30130Z Brassica rapa HOM05D006197 ORTHO05D007718 1.2e-21 105.9 67 74.6
Carub.0005s2656 Capsella rubella HOM05D006197 ORTHO05D007718 1.2e-21 105.9 67 74.6
CARHR170180 Cardamine hirsuta HOM05D006197 ORTHO05D007718 1.2e-21 105.9 67 74.6
Medtr5g013975 Medicago truncatula HOM05D006197 ORTHO05D007718 1.2e-21 105.9 67 76.1
VMungo1215G1228 Vigna mungo HOM05D006197 ORTHO05D007718 1.2e-21 105.9 67 76.1
Aqoxy1G03814 Aquilegia oxysepala HOM05D006197 ORTHO05D007718 1.6e-21 105.5 67 73.1
QL12p007107 Quercus lobata HOM05D006197 ORTHO05D007718 1.6e-21 105.5 66 77.3
Aa31LG10G14080 Aethionema arabicum HOM05D006197 ORTHO05D007718 2.1e-21 105.1 67 73.1
BcaB02g07441 Brassica carinata HOM05D006197 ORTHO05D007718 2.1e-21 105.1 67 73.1
TAR624G0346 Trochodendron aralioides HOM05D006197 ORTHO05D007718 2.1e-21 105.1 64 75.0
ATR1088G052 Amborella trichopoda HOM05D006197 ORTHO05D007718 2.7e-21 104.8 68 76.5
BcaC07g40434 Brassica carinata HOM05D006197 ORTHO05D007718 2.7e-21 104.8 67 73.1
C06p26450 Brassica napus HOM05D006197 ORTHO05D007718 2.7e-21 104.8 67 73.1
Thhalv10006335m.g Eutrema salsugineum HOM05D006197 ORTHO05D007718 2.7e-21 104.8 67 73.1
arahy.Tifrunner.gnm1.ann1.M9L3KI Arachis hypogaea HOM05D006197 ORTHO05D007718 3.5e-21 104.4 67 73.1
arahy.Tifrunner.gnm1.ann1.PC0NS4 Arachis hypogaea HOM05D006197 ORTHO05D007718 3.5e-21 104.4 67 73.1
PSO210G4997 Papaver somniferum HOM05D006197 ORTHO05D007718 3.5e-21 104.4 67 74.6
PSO832G1675 Papaver somniferum HOM05D006197 ORTHO05D007718 3.5e-21 104.4 67 74.6
Sed0004723 Sechium edule HOM05D006197 ORTHO05D007718 3.5e-21 104.4 67 71.6
VMungo1215G3393 Vigna mungo HOM05D006197 ORTHO05D007718 3.5e-21 104.4 67 76.1
Phvul.002G004500 Phaseolus vulgaris HOM05D006197 ORTHO05D007718 4.6e-21 104.0 67 73.1
Gohir.D12G213400 Gossypium hirsutum HOM05D006197 ORTHO05D007718 7.9e-21 103.2 67 74.6
Ca_24632_v3 Cicer arietinum L. HOM05D006197 ORTHO05D007718 1.0e-20 102.8 67 73.1
Sc01g0007760 Simmondsia chinensis HOM05D006197 ORTHO05D007718 1.0e-20 102.8 63 77.8
Glyma.01G201200 Glycine max HOM05D006197 ORTHO05D007718 1.8e-20 102.1 67 71.6
Glyma.11G041000 Glycine max HOM05D006197 ORTHO05D007718 1.8e-20 102.1 67 73.1
Lalb_Chr09g0323941 Lupinus albus HOM05D006197 ORTHO05D007718 2.3e-20 101.7 67 73.1
BolC8t51081H Brassica oleracea HOM05D000403 ORTHO05D004426 3.0e-20 101.3 64 73.4
TWI15G0656 Tripterygium wilfordii HOM05D006197 ORTHO05D007718 5.1e-20 100.5 69 76.8
MBI02_g29718_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D009071 6.7e-20 100.1 63 71.4
TPR.G6747 Trifolium pratense HOM05D006197 ORTHO05D007718 6.7e-20 100.1 64 73.4
Psat2g174760 Pisum sativum HOM05D006197 ORTHO05D007718 1.1e-19 99.4 67 71.6
Phvul.002G003700 Phaseolus vulgaris HOM05D006197 ORTHO05D007718 3.3e-19 97.8 61 72.1
Duzib084G1370 Durio zibethinus HOM05D006197 ORTHO05D007718 9.6e-19 96.3 67 73.1
CsaV3_3G049530 Cucumis sativus L. HOM05D006197 ORTHO05D007718 1.3e-18 95.9 67 65.7
Os05g0500450 Oryza sativa ssp. japonica HOM05D006197 ORTHO05D007718 4.0e-17 90.9 65 67.7
AagrBONN_evm.TU.Sc2ySwM_368.296 Anthoceros agrestis HOM05D006197 ORTHO05D007718 6.9e-17 90.1 54 64.8
CAN.G799.18 Capsicum annuum HOM05D006197 ORTHO05D007718 2.0e-16 88.6 55 76.4
Mapoly0127s0016 Marchantia polymorpha HOM05D006197 ORTHO05D007718 4.5e-16 87.4 57 61.4
CBR_g8168 Chara braunii HOM05D006197 ORTHO05D007718 1.4e-14 82.4 52 69.2
Migut.E01523 Erythranthe guttata HOM05D006197 ORTHO05D007718 1.9e-14 82.0 67 56.7
Migut.E01526 Erythranthe guttata HOM05D006197 ORTHO05D007718 2.4e-14 81.6 67 55.2
Mapoly0046s0110 Marchantia polymorpha HOM05D006197 ORTHO05D007718 2.4e-14 81.6 58 60.3
Pp3c14_9970 Physcomitrium patens HOM05D006197 ORTHO05D007718 9.3e-14 79.7 64 59.4
Eucgr.C01972 Eucalyptus grandis HOM05D006197 ORTHO05D007718 6.0e-13 77.0 60 56.7
Cc08_g01940 Coffea canephora HOM05D000011 ORTHO05D000157 3.9e-12 74.3 32 100.0
SMO119G0374 Selaginella moellendorffii HOM05D006197 ORTHO05D007718 3.9e-12 74.3 53 66.0
Nn1g08520 Nelumbo nucifera HOM05D006197 ORTHO05D007718 4.3e-11 70.9 62 58.1
Cc08_g02010 Coffea canephora HOM05D000011 ORTHO05D000157 4.2e-06 54.3 24 95.8


User provided reference genes

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