Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g01960 Coffea canephora HOM05D002773 ORTHO05D003110 2.3e-34 148.3 72 100.0
Solyc08g077260.3 Solanum lycopersicum HOM05D002773 ORTHO05D003110 2.5e-17 91.7 66 68.2
Sopen08g025840 Solanum pennellii HOM05D002773 ORTHO05D003110 2.5e-17 91.7 66 68.2
PGSC0003DMG400024225 Solanum tuberosum HOM05D002773 ORTHO05D003110 2.5e-17 91.7 63 69.8
Ciclev10033036m.g Citrus clementina HOM05D002773 ORTHO05D003110 3.7e-16 87.8 69 65.2
Nitab4.5_0006693g0040 Nicotiana tabacum HOM05D002773 ORTHO05D003110 8.2e-16 86.7 50 78.0
Migut.A00007 Erythranthe guttata HOM05D002773 ORTHO05D003110 2.4e-15 85.1 69 58.0
Potri.001G146600 Populus trichocarpa HOM05D002773 ORTHO05D003110 2.4e-15 85.1 50 78.0
CAN.G799.16 Capsicum annuum HOM05D002773 ORTHO05D003110 3.1e-15 84.7 67 67.2
Manes.17G019200 Manihot esculenta HOM05D002773 ORTHO05D003110 3.1e-15 84.7 69 60.9
Nitab4.5_0002055g0130 Nicotiana tabacum HOM05D002773 ORTHO05D003110 3.1e-15 84.7 50 78.0
SGA_v2.0_scaffold64G22004 Striga asiatica HOM05D002773 ORTHO05D003110 4.1e-15 84.3 50 72.0
Oeu000757.1 Olea europaea HOM05D002773 ORTHO05D003110 6.9e-15 83.6 50 76.0
Potri.003G087500 Populus trichocarpa HOM05D002773 ORTHO05D003110 1.2e-14 82.8 50 76.0
Eucgr.E00311 Eucalyptus grandis HOM05D002773 ORTHO05D003110 1.5e-14 82.4 50 80.0
Prupe.5G047000 Prunus persica HOM05D002773 ORTHO05D003110 2.0e-14 82.0 72 59.7
MELO3C013876.2 Cucumis melo HOM05D002773 ORTHO05D003110 3.4e-14 81.3 50 74.0
CsaV3_3G002050 Cucumis sativus L. HOM05D002773 ORTHO05D003110 3.4e-14 81.3 50 74.0
Atru.chr6.1772 Acer truncatum HOM05D002773 ORTHO05D003110 4.5e-14 80.9 66 63.6
RcHm_v2.0_Chr7g0208281 Rosa chinensis HOM05D002773 ORTHO05D003110 4.5e-14 80.9 69 59.4
FvH4_5g21150 Fragaria vesca HOM05D002773 ORTHO05D003110 7.7e-14 80.1 72 56.9
FAN13G2331 Fragaria x ananassa HOM05D002773 ORTHO05D003110 7.7e-14 80.1 72 56.9
Lalb_Chr16g0379221 Lupinus albus HOM05D002773 ORTHO05D003110 1.0e-13 79.7 66 62.1
SalBow4G1827 Salvia bowleyana HOM05D002773 ORTHO05D003110 1.0e-13 79.7 50 74.0
FAN04G1510 Fragaria x ananassa HOM05D002773 ORTHO05D003110 1.3e-13 79.3 50 74.0
Lj2A247T83 Lonicera japonica HOM05D002773 ORTHO05D003110 1.3e-13 79.3 50 74.0
Sabra03G0057400 Salix brachista HOM05D002773 ORTHO05D003110 1.3e-13 79.3 50 72.0
Sc01g0007750 Simmondsia chinensis HOM05D002773 ORTHO05D003110 1.3e-13 79.3 50 70.0
EL10Ac5g12194 Beta vulgaris HOM05D002773 ORTHO05D003110 1.7e-13 79.0 73 58.9
Cpa.g.sc6.410 Carica papaya HOM05D002773 ORTHO05D003110 1.7e-13 79.0 67 59.7
Dinv25185 Davidia involucrata HOM05D002773 ORTHO05D003110 1.7e-13 79.0 50 74.0
TWI15G0115 Tripterygium wilfordii HOM05D002773 ORTHO05D003110 1.7e-13 79.0 49 73.5
PGR042G2318 Punica granatum HOM05D002773 ORTHO05D003110 2.2e-13 78.6 50 74.0
Duzib205G0838 Durio zibethinus HOM05D002773 ORTHO05D003110 2.9e-13 78.2 69 59.4
Phvul.002G004600 Phaseolus vulgaris HOM05D002773 ORTHO05D003110 2.9e-13 78.2 69 58.0
Duzib068G0741 Durio zibethinus HOM05D002773 ORTHO05D003110 3.8e-13 77.8 66 62.1
VMungo1215G1429 Vigna mungo HOM05D002773 ORTHO05D003110 3.8e-13 77.8 69 56.5
MD06G1040700 Malus domestica HOM05D002773 ORTHO05D003110 5.0e-13 77.4 44 81.8
Peaxi162Scf00084g00923 Petunia axillaris HOM05D002773 ORTHO05D003110 5.0e-13 77.4 67 62.7
MD16G1269000 Malus domestica HOM05D002773 ORTHO05D003110 6.5e-13 77.0 51 74.5
TWI81G0774 Tripterygium wilfordii HOM05D002773 ORTHO05D003110 6.5e-13 77.0 69 56.5
MSTRG.26030 Avicennia marina HOM05D002773 ORTHO05D003110 8.5e-13 76.6 50 66.0
Ca_22044_v3 Cicer arietinum L. HOM05D002773 ORTHO05D003110 8.5e-13 76.6 47 74.5
Gohir.A08G159500 Gossypium hirsutum HOM05D002773 ORTHO05D003110 8.5e-13 76.6 50 74.0
Gohir.D08G179900 Gossypium hirsutum HOM05D002773 ORTHO05D003110 8.5e-13 76.6 50 74.0
Gorai.004G188400 Gossypium raimondii HOM05D002773 ORTHO05D003110 8.5e-13 76.6 50 74.0
Hma1.2p1_0414F.1_g147750 Hydrangea macrophylla HOM05D002773 ORTHO05D003110 8.5e-13 76.6 51 68.6
Sabra01G0115300 Salix brachista HOM05D002773 ORTHO05D003110 8.5e-13 76.6 50 70.0
Cfa012387 Carpinus fangiana HOM05D002773 ORTHO05D003110 1.1e-12 76.3 69 55.1
arahy.Tifrunner.gnm1.ann1.GJ8TLU Arachis hypogaea HOM05D002773 ORTHO05D003110 1.4e-12 75.9 51 74.5
arahy.Tifrunner.gnm1.ann1.R1RU8V Arachis hypogaea HOM05D002773 ORTHO05D003110 1.4e-12 75.9 51 74.5
Glyma.01G201100 Glycine max HOM05D002773 ORTHO05D003110 1.4e-12 75.9 69 56.5
Thecc.03G233900 Theobroma cacao HOM05D002773 ORTHO05D003110 1.4e-12 75.9 50 72.0
Ca_24633_v3 Cicer arietinum L. HOM05D002773 ORTHO05D003110 1.9e-12 75.5 69 55.1
Glyma.11G041100 Glycine max HOM05D002773 ORTHO05D003110 1.9e-12 75.5 69 55.1
Psat2g174680 Pisum sativum HOM05D002773 ORTHO05D003110 1.9e-12 75.5 65 56.9
VMungo1215G0312 Vigna mungo HOM05D000001 ORTHO05D010365 1.9e-12 75.5 69 55.1
arahy.Tifrunner.gnm1.ann1.UY4ZNB Arachis hypogaea HOM05D002773 ORTHO05D003110 2.5e-12 75.1 50 70.0
Haze_08296 Corylus avellana HOM05D002773 ORTHO05D003110 2.5e-12 75.1 69 55.1
Dinv28917 Davidia involucrata HOM05D002773 ORTHO05D003110 2.5e-12 75.1 67 61.2
Lj2g0023193 Lotus japonicus HOM05D002773 ORTHO05D003110 2.5e-12 75.1 70 57.1
CSS0038941 Camellia sinensis var. sinensis HOM05D002773 ORTHO05D003110 3.2e-12 74.7 69 55.1
Phvul.003G228400 Phaseolus vulgaris HOM05D002773 ORTHO05D003110 3.2e-12 74.7 69 56.5
CANSAT64G1419 Cannabis sativa HOM05D002773 ORTHO05D003110 4.2e-12 74.3 46 73.9
CSS0022491 Camellia sinensis var. sinensis HOM05D002773 ORTHO05D003110 5.5e-12 73.9 72 52.8
AUR62018768 Chenopodium quinoa HOM05D002773 ORTHO05D003110 5.5e-12 73.9 73 53.4
Glyma.17G152500 Glycine max HOM05D002773 ORTHO05D003110 5.5e-12 73.9 50 70.0
CiPaw.11G087600 Carya illinoinensis HOM05D002773 ORTHO05D003110 7.2e-12 73.6 50 72.0
COL.COLO4_17109 Corchorus olitorius HOM05D002773 ORTHO05D003110 7.2e-12 73.6 68 54.4
Medtr5g013980 Medicago truncatula HOM05D002773 ORTHO05D003110 7.2e-12 73.6 69 55.1
arahy.Tifrunner.gnm1.ann1.H3B4BB Arachis hypogaea HOM05D002773 ORTHO05D003110 9.4e-12 73.2 50 74.0
arahy.Tifrunner.gnm1.ann1.J0XAHM Arachis hypogaea HOM05D002773 ORTHO05D003110 9.4e-12 73.2 50 74.0
arahy.Tifrunner.gnm1.ann1.JLT3U8 Arachis hypogaea HOM05D002773 ORTHO05D003110 9.4e-12 73.2 50 74.0
AUR62007232 Chenopodium quinoa HOM05D002773 ORTHO05D003110 9.4e-12 73.2 73 53.4
HanXRQChr08g0227951 Helianthus annuus HOM05D002773 ORTHO05D003110 1.2e-11 72.8 51 72.5
ECA233G0346 Erigeron canadensis HOM05D002773 ORTHO05D003110 1.6e-11 72.4 51 74.5
Gohir.A03G002700 Gossypium hirsutum HOM05D002773 ORTHO05D003110 2.1e-11 72.0 66 59.1
GSVIVG01013231001 Vitis vinifera HOM05D002773 ORTHO05D003110 6.1e-11 70.5 50 66.0
arahy.Tifrunner.gnm1.ann1.85A8RG Arachis hypogaea HOM05D002773 ORTHO05D003110 7.9e-11 70.1 46 69.6
CSS0038891 Camellia sinensis var. sinensis HOM05D002773 ORTHO05D003110 1.0e-10 69.7 67 52.2
CSS0045954 Camellia sinensis var. sinensis HOM05D002773 ORTHO05D003110 1.0e-10 69.7 67 52.2
DCAR_024977 Daucus carota HOM05D002773 ORTHO05D003110 1.4e-10 69.3 51 64.7
HanXRQChr02g0042201 Helianthus annuus HOM05D002773 ORTHO05D003110 1.4e-10 69.3 45 66.7
QL12p007100 Quercus lobata HOM05D002773 ORTHO05D003110 1.8e-10 68.9 49 65.3
Aqoxy2G03677 Aquilegia oxysepala HOM05D002773 ORTHO05D003110 2.3e-10 68.6 47 70.2
Peaxi162Scf00772g00022 Petunia axillaris HOM05D002773 ORTHO05D003110 2.3e-10 68.6 51 72.5
Sed0023096 Sechium edule HOM05D002773 ORTHO05D003110 2.3e-10 68.6 50 62.0
unitig_32.g10884 Utricularia gibba HOM05D002773 ORTHO05D003110 2.3e-10 68.6 47 63.8
Lj4g0007442 Lotus japonicus HOM05D002773 ORTHO05D003110 3.0e-10 68.2 50 64.0
Gohir.D03G169600 Gossypium hirsutum HOM05D002773 ORTHO05D003110 3.9e-10 67.8 50 66.0
Gorai.003G179900 Gossypium raimondii HOM05D002773 ORTHO05D003110 3.9e-10 67.8 50 66.0
TAR636G3059 Trochodendron aralioides HOM05D002773 ORTHO05D003110 3.9e-10 67.8 50 64.0
VMungo0251G3359 Vigna mungo HOM05D000266 ORTHO05D000765 6.7e-10 67.0 59 57.6
arahy.Tifrunner.gnm1.ann1.VZCU3T Arachis hypogaea HOM05D002773 ORTHO05D003110 8.8e-10 66.6 39 74.4
Lsat_1_v5_gn_6_67201 Lactuca sativa HOM05D002773 ORTHO05D003110 1.5e-09 65.9 69 53.6
Nn1g00611 Nelumbo nucifera HOM05D002773 ORTHO05D003110 2.0e-09 65.5 70 51.4
Rhsim01G0119500 Rhododendron simsii HOM05D002773 ORTHO05D003110 2.0e-09 65.5 44 63.6
THA.LOC104814430 Tarenaya hassleriana HOM05D002773 ORTHO05D003110 2.5e-09 65.1 65 46.2
unitig_748.g8269 Utricularia gibba HOM05D002773 ORTHO05D003110 2.5e-09 65.1 47 59.6
BcaB07g32925 Brassica carinata HOM05D002773 ORTHO05D003110 3.3e-09 64.7 71 47.9
CARHR031840 Cardamine hirsuta HOM05D002773 ORTHO05D003110 3.3e-09 64.7 71 45.1
CDE06G2296 Ceratophyllum demersum HOM05D002773 ORTHO05D003110 3.3e-09 64.7 66 50.0
Duzib084G1029 Durio zibethinus HOM05D002773 ORTHO05D003110 3.3e-09 64.7 50 66.0
PSO675G6125 Papaver somniferum HOM05D002773 ORTHO05D003110 5.7e-09 63.9 47 66.0
C05p31870 Brassica napus HOM05D002773 ORTHO05D003110 9.7e-09 63.2 71 46.5
arahy.Tifrunner.gnm1.ann1.RT1TXA Arachis hypogaea HOM05D002773 ORTHO05D003110 1.3e-08 62.8 38 76.3
BolC5t31915H Brassica oleracea HOM05D002773 ORTHO05D003110 1.3e-08 62.8 71 46.5
vmacro00352 Vaccinium macrocarpon HOM05D004955 ORTHO05D005965 1.3e-08 62.8 48 62.5
Aa31LG2G13540 Aethionema arabicum HOM05D002773 ORTHO05D003110 1.7e-08 62.4 52 57.7
ClCG09G012370 Citrullus lanatus HOM05D002773 ORTHO05D003110 1.7e-08 62.4 50 54.0
PSO717G0106 Papaver somniferum HOM05D002773 ORTHO05D003110 1.7e-08 62.4 47 63.8
Zm00001eb192110 Zea mays HOM05D002773 ORTHO05D003110 1.7e-08 62.4 47 63.8
Os02g0803400 Oryza sativa ssp. japonica HOM05D002773 ORTHO05D003110 2.2e-08 62.0 47 63.8
Hund14429 Selenicereus undatus HOM05D002773 ORTHO05D003110 2.8e-08 61.6 53 62.3
BcaC05g27279 Brassica carinata HOM05D002773 ORTHO05D003110 3.7e-08 61.2 71 46.5
A09p33760 Brassica napus HOM05D002773 ORTHO05D003110 3.7e-08 61.2 71 46.5
BraA09t38925Z Brassica rapa HOM05D002773 ORTHO05D003110 3.7e-08 61.2 71 46.5
unitig_736.g22589 Utricularia gibba HOM05D002773 ORTHO05D003110 3.7e-08 61.2 46 60.9
Sp1g28480 Schrenkiella parvula HOM05D002773 ORTHO05D003110 4.8e-08 60.8 71 46.5
ATR0737G168 Amborella trichopoda HOM05D002773 ORTHO05D003110 6.3e-08 60.5 49 59.2
AL1G46600 Arabidopsis lyrata HOM05D002773 ORTHO05D003110 6.3e-08 60.5 71 45.1
AT1G32410 Arabidopsis thaliana HOM05D002773 ORTHO05D003110 6.3e-08 60.5 71 45.1
Carub.0001s3081 Capsella rubella HOM05D002773 ORTHO05D003110 1.1e-07 59.7 68 48.5
HPP92_025678 Vanilla planifolia HOM05D002773 ORTHO05D003110 1.8e-07 58.9 50 56.0
C03p44990 Brassica napus HOM05D002773 ORTHO05D003110 3.1e-07 58.2 46 58.7
Thhalv10009570m.g Eutrema salsugineum HOM05D002773 ORTHO05D003110 3.1e-07 58.2 52 55.8
Oeu017694.1 Olea europaea HOM05D002773 ORTHO05D003110 3.1e-07 58.2 44 61.4
Actinidia03392 Actinidia chinensis HOM05D002773 ORTHO05D003110 4.1e-07 57.8 37 67.6
MSTRG.23380 Avicennia marina HOM05D002773 ORTHO05D003110 4.1e-07 57.8 44 61.4
BcaC05g29359 Brassica carinata HOM05D002773 ORTHO05D003110 6.9e-07 57.0 46 56.5
A05p37800 Brassica napus HOM05D002773 ORTHO05D003110 6.9e-07 57.0 46 56.5
C05p56420 Brassica napus HOM05D002773 ORTHO05D003110 6.9e-07 57.0 46 56.5
BolC5t34309H Brassica oleracea HOM05D002773 ORTHO05D003110 6.9e-07 57.0 46 56.5
BraA05t22575Z Brassica rapa HOM05D002773 ORTHO05D003110 6.9e-07 57.0 46 56.5
Rhsim04G0131300 Rhododendron simsii HOM05D002773 ORTHO05D003110 6.9e-07 57.0 44 63.6
SalBow3G3077 Salvia bowleyana HOM05D002773 ORTHO05D003110 6.9e-07 57.0 44 61.4
SalBow3G3691 Salvia bowleyana HOM05D002773 ORTHO05D003110 6.9e-07 57.0 44 61.4
vmacro08865 Vaccinium macrocarpon HOM05D002773 ORTHO05D003110 6.9e-07 57.0 44 63.6
BcaB06g25611 Brassica carinata HOM05D002773 ORTHO05D003110 9.1e-07 56.6 44 59.1
BcaC01g04108 Brassica carinata HOM05D002773 ORTHO05D003110 9.1e-07 56.6 44 59.1
A03p37120 Brassica napus HOM05D002773 ORTHO05D003110 9.1e-07 56.6 44 59.1
BolC3t16759H Brassica oleracea HOM05D002773 ORTHO05D003110 9.1e-07 56.6 44 59.1
BraA03t12874Z Brassica rapa HOM05D002773 ORTHO05D003110 9.1e-07 56.6 44 59.1
Migut.H02289 Erythranthe guttata HOM05D002773 ORTHO05D003110 9.1e-07 56.6 44 56.8
Lalb_Chr01g0017961 Lupinus albus HOM05D002773 ORTHO05D003110 9.1e-07 56.6 46 63.0
Lalb_Chr25g0288221 Lupinus albus HOM05D002773 ORTHO05D003110 9.1e-07 56.6 46 63.0
Eucgr.A02634 Eucalyptus grandis HOM05D002773 ORTHO05D003110 1.2e-06 56.2 44 61.4
Psat3g031720 Pisum sativum HOM05D002773 ORTHO05D003110 1.2e-06 56.2 46 60.9
TPR.G23317 Trifolium pratense HOM05D002773 ORTHO05D006641 1.2e-06 56.2 46 60.9
Cc06_g06150 Coffea canephora HOM05D002773 ORTHO05D003110 1.5e-06 55.8 44 59.1
Sc20g0006390 Simmondsia chinensis HOM05D002773 ORTHO05D003110 1.5e-06 55.8 46 58.7
AUR62036989 Chenopodium quinoa HOM05D002773 ORTHO05D003110 2.0e-06 55.5 46 58.7
ClCG10G001920 Citrullus lanatus HOM05D002773 ORTHO05D003110 2.0e-06 55.5 27 92.6
Glyma.19G195900 Glycine max HOM05D002773 ORTHO05D003110 2.0e-06 55.5 46 58.7
Lj1g0015508 Lotus japonicus HOM05D002773 ORTHO05D003110 2.0e-06 55.5 46 60.9
Phvul.001G192100 Phaseolus vulgaris HOM05D002773 ORTHO05D003110 2.0e-06 55.5 46 58.7
arahy.Tifrunner.gnm1.ann1.RE2B1L Arachis hypogaea HOM05D002773 ORTHO05D003110 2.6e-06 55.1 46 58.7
Medtr7g105200 Medicago truncatula HOM05D002773 ORTHO05D003110 2.6e-06 55.1 46 58.7
PGR004G1482 Punica granatum HOM05D002773 ORTHO05D003110 2.6e-06 55.1 44 59.1
THA.LOC104816599 Tarenaya hassleriana HOM05D002773 ORTHO05D003110 2.6e-06 55.1 46 58.7
VMungo1383G0303 Vigna mungo HOM05D002773 ORTHO05D003110 2.6e-06 55.1 46 58.7
arahy.Tifrunner.gnm1.ann1.N5497M Arachis hypogaea HOM05D002773 ORTHO05D003110 3.4e-06 54.7 46 56.5
AUR62006224 Chenopodium quinoa HOM05D002773 ORTHO05D003110 3.4e-06 54.7 44 61.4
Glyma.03G198000 Glycine max HOM05D002773 ORTHO05D003110 3.4e-06 54.7 46 58.7
Aa31LG3G4930 Aethionema arabicum HOM05D002773 ORTHO05D003110 4.5e-06 54.3 46 56.5
EL10Ac7g16876 Beta vulgaris HOM05D002773 ORTHO05D003110 4.5e-06 54.3 46 56.5
CSS0017717 Camellia sinensis var. sinensis HOM05D002773 ORTHO05D003110 4.5e-06 54.3 44 61.4
DCAR_009169 Daucus carota HOM05D002773 ORTHO05D003110 4.5e-06 54.3 44 59.1
AL3G23080 Arabidopsis lyrata HOM05D002773 ORTHO05D003110 5.9e-06 53.9 46 54.3
AT3G11530 Arabidopsis thaliana HOM05D002773 ORTHO05D003110 5.9e-06 53.9 46 54.3
Carub.0003s1085 Capsella rubella HOM05D002773 ORTHO05D003110 5.9e-06 53.9 46 54.3
CARHR086080 Cardamine hirsuta HOM05D002773 ORTHO05D003110 5.9e-06 53.9 46 54.3
Thhalv10021777m.g Eutrema salsugineum HOM05D002773 ORTHO05D003110 5.9e-06 53.9 46 54.3
Sp3g09770 Schrenkiella parvula HOM05D002773 ORTHO05D003110 5.9e-06 53.9 46 54.3
BcaB04g18646 Brassica carinata HOM05D002773 ORTHO05D003110 7.7e-06 53.5 44 56.8
CAN.G397.86 Capsicum annuum HOM05D002773 ORTHO05D003110 7.7e-06 53.5 44 61.4
Dinv31717 Davidia involucrata HOM05D002773 ORTHO05D003110 7.7e-06 53.5 44 61.4
Manes.09G052500 Manihot esculenta HOM05D002773 ORTHO05D003110 7.7e-06 53.5 46 56.5
Peaxi162Scf00069g00043 Petunia axillaris HOM05D002773 ORTHO05D003110 7.7e-06 53.5 44 61.4


User provided reference genes

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