Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g01810 Coffea canephora HOM05D006197 ORTHO05D007718 1.4e-53 212.6 103 100.0
Cc00_g23310 Coffea canephora HOM05D006197 ORTHO05D007718 1.8e-53 212.2 103 99.0
Cc00_g26570 Coffea canephora HOM05D006197 ORTHO05D007718 2.7e-52 208.4 103 97.1
Cc00_g30230 Coffea canephora HOM05D006197 ORTHO05D007718 3.5e-52 208.0 103 98.1
Cc00_g31810 Coffea canephora HOM05D006197 ORTHO05D007718 1.3e-43 179.5 89 97.8
PGSC0003DMG400024214 Solanum tuberosum HOM05D006197 ORTHO05D007718 1.4e-37 159.5 106 77.4
Sopen05g026900 Solanum pennellii HOM05D006197 ORTHO05D007718 2.4e-37 158.7 106 76.4
Sopen08g025860 Solanum pennellii HOM05D006197 ORTHO05D007718 2.4e-37 158.7 106 76.4
Nitab4.5_0006693g0020 Nicotiana tabacum HOM05D006197 ORTHO05D007718 9.2e-37 156.8 105 75.2
Solyc08g077280.1 Solanum lycopersicum HOM05D006197 ORTHO05D007718 1.2e-36 156.4 106 75.5
Nitab4.5_0002055g0120 Nicotiana tabacum HOM05D006197 ORTHO05D007718 5.1e-35 151.0 106 75.5
Lsat_1_v5_gn_6_66400 Lactuca sativa HOM05D006197 ORTHO05D007718 8.1e-33 143.7 112 67.0
Oeu014592.2 Olea europaea HOM05D006197 ORTHO05D007718 8.1e-33 143.7 104 70.2
Peaxi162Scf00084g00099 Petunia axillaris HOM05D006197 ORTHO05D007718 8.1e-33 143.7 100 75.0
CSS0031892 Camellia sinensis var. sinensis HOM05D006197 ORTHO05D007718 1.1e-32 143.3 109 68.8
CSS0033989 Camellia sinensis var. sinensis HOM05D006197 ORTHO05D007718 1.1e-32 143.3 109 68.8
CSS0037645 Camellia sinensis var. sinensis HOM05D006197 ORTHO05D007718 1.1e-32 143.3 109 68.8
Migut.N01790 Erythranthe guttata HOM05D006197 ORTHO05D007718 1.4e-32 142.9 105 66.7
Hma1.2p1_0311F.1_g121310 Hydrangea macrophylla HOM05D006197 ORTHO05D007718 1.4e-32 142.9 106 70.8
SalBow1G7863 Salvia bowleyana HOM05D006197 ORTHO05D007718 4.0e-32 141.4 104 71.2
Cc08_g01910 Coffea canephora HOM05D006197 ORTHO05D007718 5.2e-32 141.0 103 70.9
Cc08_g01990 Coffea canephora HOM05D006197 ORTHO05D007718 6.8e-32 140.6 67 98.5
Haze_08298 Corylus avellana HOM05D006197 ORTHO05D007718 8.9e-32 140.2 103 69.9
Dinv28915 Davidia involucrata HOM05D006197 ORTHO05D007718 1.2e-31 139.8 103 67.0
ECA240G0414 Erigeron canadensis HOM05D006197 ORTHO05D007718 4.4e-31 137.9 109 66.1
PGR042G3581 Punica granatum HOM05D006197 ORTHO05D007718 4.4e-31 137.9 103 66.0
GSVIVG01013230001 Vitis vinifera HOM05D006197 ORTHO05D007718 4.4e-31 137.9 103 68.9
CiPaw.11G087500 Carya illinoinensis HOM05D006197 ORTHO05D007718 5.8e-31 137.5 104 67.3
Cc08_g02050 Coffea canephora HOM05D006197 ORTHO05D007718 5.8e-31 137.5 85 81.2
Cfa012386 Carpinus fangiana HOM05D006197 ORTHO05D007718 7.5e-31 137.1 103 69.9
HanXRQChr08g0234831 Helianthus annuus HOM05D006197 ORTHO05D007718 7.5e-31 137.1 108 68.5
Potri.001G146700 Populus trichocarpa HOM05D006197 ORTHO05D007718 7.5e-31 137.1 103 67.0
Duzib068G0126 Durio zibethinus HOM05D006197 ORTHO05D007718 9.9e-31 136.7 103 68.0
QL12p007107 Quercus lobata HOM05D006197 ORTHO05D007718 1.3e-30 136.3 106 65.1
Duzib205G0278 Durio zibethinus HOM05D006197 ORTHO05D007718 1.7e-30 136.0 103 68.0
Oeu006551.1 Olea europaea HOM05D006197 ORTHO05D007718 2.2e-30 135.6 104 66.3
Gohir.A04G000300 Gossypium hirsutum HOM05D006197 ORTHO05D007718 2.9e-30 135.2 103 68.9
MD16G1269400 Malus domestica HOM05D006197 ORTHO05D007718 3.7e-30 134.8 103 69.9
FAN04G1051 Fragaria x ananassa HOM05D006197 ORTHO05D007718 6.4e-30 134.0 103 68.9
Gohir.A08G159600 Gossypium hirsutum HOM05D006197 ORTHO05D007718 1.1e-29 133.3 103 68.0
Gohir.D08G180000 Gossypium hirsutum HOM05D006197 ORTHO05D007718 1.1e-29 133.3 103 68.0
Gorai.004G188500 Gossypium raimondii HOM05D006197 ORTHO05D007718 1.1e-29 133.3 103 68.0
Eucgr.E00313 Eucalyptus grandis HOM05D006197 ORTHO05D007718 1.4e-29 132.9 104 67.3
Manes.15G173000 Manihot esculenta HOM05D006197 ORTHO05D007718 1.4e-29 132.9 104 66.3
Atru.chr6.1773 Acer truncatum HOM05D006197 ORTHO05D007718 1.9e-29 132.5 106 65.1
Actinidia03393 Actinidia chinensis HOM05D004955 ORTHO05D005965 1.9e-29 132.5 88 73.9
unitig_747.g21291 Utricularia gibba HOM05D006197 ORTHO05D007718 1.9e-29 132.5 103 63.1
Ciclev10033154m.g Citrus clementina HOM05D006197 ORTHO05D007718 2.4e-29 132.1 111 63.1
FAN18G0540 Fragaria x ananassa HOM05D006197 ORTHO05D007718 2.4e-29 132.1 103 68.9
Gorai.008G229000 Gossypium raimondii HOM05D006197 ORTHO05D007718 2.4e-29 132.1 103 67.0
DCAR_008300 Daucus carota HOM05D006197 ORTHO05D007718 4.1e-29 131.3 103 68.0
Prupe.5G046200 Prunus persica HOM05D006197 ORTHO05D007718 1.2e-28 129.8 103 67.0
FAN13G1034 Fragaria x ananassa HOM05D006197 ORTHO05D007718 1.6e-28 129.4 100 68.0
TWI81G0993 Tripterygium wilfordii HOM05D006197 ORTHO05D007718 1.6e-28 129.4 104 66.3
Sabra01G0115400 Salix brachista HOM05D006197 ORTHO05D007718 2.1e-28 129.0 103 65.0
COL.COLO4_17110 Corchorus olitorius HOM05D006197 ORTHO05D007718 2.7e-28 128.6 103 65.0
Rhsim11G0011100 Rhododendron simsii HOM05D006197 ORTHO05D007718 2.7e-28 128.6 106 64.2
RcHm_v2.0_Chr7g0208331 Rosa chinensis HOM05D006197 ORTHO05D007718 3.5e-28 128.3 103 66.0
THA.LOC104819961 Tarenaya hassleriana HOM05D006197 ORTHO05D007718 3.5e-28 128.3 106 61.3
MBI11_g07528_MAGBIO Magnolia biondii HOM05D006197 ORTHO05D007718 4.6e-28 127.9 106 63.2
Thecc.03G234100 Theobroma cacao HOM05D006197 ORTHO05D007718 4.6e-28 127.9 103 66.0
Sed0016057 Sechium edule HOM05D006197 ORTHO05D007718 7.8e-28 127.1 105 62.9
Cpa.g.sc6.409 Carica papaya HOM05D006197 ORTHO05D007718 1.0e-27 126.7 103 63.1
Thhalv10006335m.g Eutrema salsugineum HOM05D006197 ORTHO05D007718 1.0e-27 126.7 104 62.5
BcaC07g40556 Brassica carinata HOM05D006197 ORTHO05D007718 1.3e-27 126.3 103 64.1
A09p52120 Brassica napus HOM05D006197 ORTHO05D007718 1.3e-27 126.3 103 64.1
Nn1g03717 Nelumbo nucifera HOM05D006197 ORTHO05D007718 1.3e-27 126.3 99 62.6
FAN08G0099 Fragaria x ananassa HOM05D006197 ORTHO05D007718 2.3e-27 125.6 103 66.0
Sp5g03300 Schrenkiella parvula HOM05D006197 ORTHO05D007718 3.0e-27 125.2 104 63.5
AL5G41940 Arabidopsis lyrata HOM05D006197 ORTHO05D007718 3.9e-27 124.8 104 62.5
AT3G59840 Arabidopsis thaliana HOM05D006197 ORTHO05D007718 3.9e-27 124.8 104 62.5
Carub.0005s2656 Capsella rubella HOM05D006197 ORTHO05D007718 3.9e-27 124.8 104 62.5
Gohir.D12G213400 Gossypium hirsutum HOM05D006197 ORTHO05D007718 3.9e-27 124.8 103 64.1
CANSAT64G2368 Cannabis sativa HOM05D006197 ORTHO05D007718 5.1e-27 124.4 112 61.6
Sed0004723 Sechium edule HOM05D006197 ORTHO05D007718 5.1e-27 124.4 103 60.2
Aa31LG10G14080 Aethionema arabicum HOM05D006197 ORTHO05D007718 8.6e-27 123.6 107 63.6
arahy.Tifrunner.gnm1.ann1.M9L3KI Arachis hypogaea HOM05D006197 ORTHO05D007718 8.6e-27 123.6 108 59.3
arahy.Tifrunner.gnm1.ann1.PC0NS4 Arachis hypogaea HOM05D006197 ORTHO05D007718 8.6e-27 123.6 108 59.3
BcaB02g07441 Brassica carinata HOM05D006197 ORTHO05D007718 8.6e-27 123.6 104 61.5
BcaC07g40434 Brassica carinata HOM05D006197 ORTHO05D007718 8.6e-27 123.6 103 62.1
BcaC08g45013 Brassica carinata HOM05D006197 ORTHO05D007718 8.6e-27 123.6 103 63.1
BolC6t37808H Brassica oleracea HOM05D006197 ORTHO05D007718 8.6e-27 123.6 103 63.1
AUR62018769 Chenopodium quinoa HOM05D006197 ORTHO05D007718 8.6e-27 123.6 104 63.5
A07p24860 Brassica napus HOM05D006197 ORTHO05D007718 1.1e-26 123.2 103 61.2
BraA07t30130Z Brassica rapa HOM05D006197 ORTHO05D007718 1.1e-26 123.2 103 61.2
VMungo1215G1228 Vigna mungo HOM05D006197 ORTHO05D007718 1.1e-26 123.2 105 61.0
Aqoxy1G03814 Aquilegia oxysepala HOM05D006197 ORTHO05D007718 1.5e-26 122.9 106 59.4
EL10Ac5g12195 Beta vulgaris HOM05D006197 ORTHO05D007718 1.9e-26 122.5 100 61.0
C06p26450 Brassica napus HOM05D006197 ORTHO05D007718 1.9e-26 122.5 103 62.1
Dinv25183 Davidia involucrata HOM05D002285 ORTHO05D009255 1.9e-26 122.5 106 60.4
MBI02_g29718_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D009071 1.9e-26 122.5 102 61.8
CARHR170180 Cardamine hirsuta HOM05D006197 ORTHO05D007718 2.5e-26 122.1 104 61.5
AUR62007231 Chenopodium quinoa HOM05D006197 ORTHO05D007718 2.5e-26 122.1 103 62.1
Lj2g0021118 Lotus japonicus HOM05D006197 ORTHO05D007718 3.3e-26 121.7 103 61.2
Glyma.11G041000 Glycine max HOM05D006197 ORTHO05D007718 4.3e-26 121.3 103 60.2
TAR624G0346 Trochodendron aralioides HOM05D006197 ORTHO05D007718 2.8e-25 118.6 100 59.0
VMungo1215G3393 Vigna mungo HOM05D006197 ORTHO05D007718 2.8e-25 118.6 108 60.2
Medtr5g013975 Medicago truncatula HOM05D006197 ORTHO05D007718 3.6e-25 118.2 108 57.4
Ah.12g053650 Amaranthus hybridus HOM05D006197 ORTHO05D007718 6.2e-25 117.5 103 59.2
Ca_24632_v3 Cicer arietinum L. HOM05D006197 ORTHO05D007718 6.2e-25 117.5 104 57.7
TWI15G0656 Tripterygium wilfordii HOM05D006197 ORTHO05D007718 6.2e-25 117.5 105 63.8
PSO210G4997 Papaver somniferum HOM05D006197 ORTHO05D007718 1.4e-24 116.3 104 61.5
MELO3C003373.2 Cucumis melo HOM05D006197 ORTHO05D007718 1.8e-24 115.9 103 55.3
CsaV3_3G049530 Cucumis sativus L. HOM05D006197 ORTHO05D007718 1.8e-24 115.9 103 54.4
PSO832G1675 Papaver somniferum HOM05D006197 ORTHO05D007718 1.8e-24 115.9 106 61.3
Psat2g174760 Pisum sativum HOM05D006197 ORTHO05D007718 1.8e-24 115.9 107 57.9
Glyma.01G201200 Glycine max HOM05D006197 ORTHO05D007718 5.2e-24 114.4 107 56.1
Phvul.002G004500 Phaseolus vulgaris HOM05D006197 ORTHO05D007718 6.8e-24 114.0 103 57.3
BolC8t51081H Brassica oleracea HOM05D000403 ORTHO05D004426 7.6e-23 110.5 94 60.6
ATR1088G052 Amborella trichopoda HOM05D006197 ORTHO05D007718 9.9e-23 110.2 110 56.4
Lalb_Chr09g0323941 Lupinus albus HOM05D006197 ORTHO05D007718 1.7e-22 109.4 119 52.1
Duzib084G1370 Durio zibethinus HOM05D006197 ORTHO05D007718 2.2e-22 109.0 103 60.2
Sc01g0007760 Simmondsia chinensis HOM05D006197 ORTHO05D007718 4.9e-22 107.8 65 80.0
TPR.G6747 Trifolium pratense HOM05D006197 ORTHO05D007718 1.0e-19 100.1 64 75.0
Phvul.002G003700 Phaseolus vulgaris HOM05D006197 ORTHO05D007718 2.3e-19 99.0 103 52.4
Os05g0500450 Oryza sativa ssp. japonica HOM05D006197 ORTHO05D007718 6.6e-19 97.4 103 50.5
AagrBONN_evm.TU.Sc2ySwM_368.296 Anthoceros agrestis HOM05D006197 ORTHO05D007718 1.8e-16 89.4 92 45.7
Mapoly0127s0016 Marchantia polymorpha HOM05D006197 ORTHO05D007718 2.4e-16 89.0 80 52.5
CAN.G799.18 Capsicum annuum HOM05D006197 ORTHO05D007718 3.1e-16 88.6 55 78.2
Mapoly0046s0110 Marchantia polymorpha HOM05D006197 ORTHO05D007718 9.0e-16 87.0 82 56.1
Eucgr.C01972 Eucalyptus grandis HOM05D006197 ORTHO05D007718 4.4e-15 84.7 67 58.2
Migut.E01523 Erythranthe guttata HOM05D006197 ORTHO05D007718 7.6e-15 84.0 132 37.9
CBR_g8168 Chara braunii HOM05D006197 ORTHO05D007718 9.9e-15 83.6 52 71.2
Nn1g08520 Nelumbo nucifera HOM05D006197 ORTHO05D007718 2.2e-14 82.4 99 48.5
Migut.E01526 Erythranthe guttata HOM05D006197 ORTHO05D007718 2.9e-14 82.0 71 54.9
Pp3c14_9970 Physcomitrium patens HOM05D006197 ORTHO05D007718 3.8e-14 81.6 106 45.3
SMO119G0374 Selaginella moellendorffii HOM05D006197 ORTHO05D007718 2.7e-12 75.5 53 67.9
Cc08_g01940 Coffea canephora HOM05D000011 ORTHO05D000157 6.0e-12 74.3 32 100.0
CDE05G1960 Ceratophyllum demersum HOM05D006197 ORTHO05D007718 1.5e-07 59.7 67 49.3
Cc08_g02010 Coffea canephora HOM05D000011 ORTHO05D000157 6.4e-06 54.3 24 95.8


User provided reference genes

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