Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g01520 Coffea canephora HOM05D007758 ORTHO05D009788 1.1e-27 125.9 63 100.0
Prupe.5G051100 Prunus persica HOM05D007758 ORTHO05D009788 1.6e-15 85.5 59 71.2
COL.COLO4_06700 Corchorus olitorius HOM05D007758 ORTHO05D009788 2.1e-15 85.1 49 81.6
MD04G1056100 Malus domestica HOM05D007758 ORTHO05D009788 2.1e-15 85.1 58 74.1
Oeu035101.1 Olea europaea HOM05D007758 ORTHO05D009788 3.6e-15 84.3 61 75.4
Thecc.03G237200 Theobroma cacao HOM05D007758 ORTHO05D009788 4.6e-15 84.0 59 74.6
Hma1.2p1_1673F.1_g296900 Hydrangea macrophylla HOM05D007758 ORTHO05D009788 7.9e-15 83.2 54 75.9
Gohir.D09G192200 Gossypium hirsutum HOM05D007758 ORTHO05D009788 1.0e-14 82.8 60 71.7
Gorai.006G215000 Gossypium raimondii HOM05D007758 ORTHO05D009788 1.0e-14 82.8 60 71.7
Peaxi162Scf00715g00026 Petunia axillaris HOM05D007758 ORTHO05D009788 1.0e-14 82.8 54 75.9
CAN.G1445.11 Capsicum annuum HOM05D007758 ORTHO05D009788 1.3e-14 82.4 56 73.2
Lsat_1_v5_gn_6_90760 Lactuca sativa HOM05D007758 ORTHO05D009788 1.3e-14 82.4 55 74.5
RcHm_v2.0_Chr6g0259711 Rosa chinensis HOM05D007758 ORTHO05D009788 2.3e-14 81.6 56 73.2
CANSAT21G1691 Cannabis sativa HOM05D007758 ORTHO05D009788 3.0e-14 81.3 56 73.2
CiPaw.12G057000 Carya illinoinensis HOM05D007758 ORTHO05D009788 3.0e-14 81.3 55 72.7
Hund11300 Selenicereus undatus HOM05D007758 ORTHO05D009788 3.0e-14 81.3 49 81.6
Manes.15G171100 Manihot esculenta HOM05D007758 ORTHO05D009788 3.9e-14 80.9 52 76.9
CSS0049692 Camellia sinensis var. sinensis HOM05D007758 ORTHO05D009788 5.1e-14 80.5 54 75.9
Oeu017314.1 Olea europaea HOM05D007758 ORTHO05D009788 5.1e-14 80.5 57 73.7
PGSC0003DMG400001836 Solanum tuberosum HOM05D007758 ORTHO05D009788 5.1e-14 80.5 55 72.7
THA.LOC104814457 Tarenaya hassleriana HOM05D007758 ORTHO05D009788 8.7e-14 79.7 63 69.8
Ca_28157_v3 Cicer arietinum L. HOM05D007758 ORTHO05D009788 1.1e-13 79.3 60 71.7
DCAR_008312 Daucus carota HOM05D007758 ORTHO05D009788 1.1e-13 79.3 59 72.9
FAN13G2273 Fragaria x ananassa HOM05D007758 ORTHO05D009788 1.1e-13 79.3 58 70.7
FAN18G3236 Fragaria x ananassa HOM05D007758 ORTHO05D009788 1.1e-13 79.3 58 70.7
Hma1.2p1_0414F.1_g147490 Hydrangea macrophylla HOM05D007758 ORTHO05D009788 1.1e-13 79.3 48 79.2
CSS0001994 Camellia sinensis var. sinensis HOM05D007758 ORTHO05D009788 1.5e-13 79.0 49 79.6
Gohir.A09G197600 Gossypium hirsutum HOM05D007758 ORTHO05D009788 1.5e-13 79.0 48 81.2
Migut.E00814 Erythranthe guttata HOM05D007758 ORTHO05D009788 1.9e-13 78.6 56 71.4
ClCG09G012550 Citrullus lanatus HOM05D007758 ORTHO05D009788 2.5e-13 78.2 58 69.0
Nn1g00706 Nelumbo nucifera HOM05D007758 ORTHO05D009788 2.5e-13 78.2 54 77.8
BcaC07g38037 Brassica carinata HOM05D007758 ORTHO05D009788 3.3e-13 77.8 55 70.9
A08p12870 Brassica napus HOM05D007758 ORTHO05D009788 3.3e-13 77.8 55 70.9
BolC8t48433H Brassica oleracea HOM05D007758 ORTHO05D009788 3.3e-13 77.8 55 70.9
Sed0000899 Sechium edule HOM05D007758 ORTHO05D009788 3.3e-13 77.8 53 69.8
Cfa012357 Carpinus fangiana HOM05D007758 ORTHO05D009788 5.7e-13 77.0 60 65.0
Phvul.003G226800 Phaseolus vulgaris HOM05D007758 ORTHO05D009788 7.4e-13 76.6 53 69.8
PGR042G0139 Punica granatum HOM05D007758 ORTHO05D009788 7.4e-13 76.6 55 69.1
BcaB04g18382 Brassica carinata HOM05D007758 ORTHO05D009788 9.7e-13 76.3 55 69.1
CARHR223670 Cardamine hirsuta HOM05D007758 ORTHO05D009788 9.7e-13 76.3 54 70.4
Ca_22029_v3 Cicer arietinum L. HOM05D007758 ORTHO05D009788 9.7e-13 76.3 55 72.7
CsaV3_3G049700 Cucumis sativus L. HOM05D007758 ORTHO05D009788 9.7e-13 76.3 52 73.1
GSVIVG01013273001 Vitis vinifera HOM05D007758 ORTHO05D009788 9.7e-13 76.3 55 70.9
AL7G37620 Arabidopsis lyrata HOM05D007758 ORTHO05D009788 1.3e-12 75.9 54 72.2
BcaC06g33532 Brassica carinata HOM05D007758 ORTHO05D009788 1.3e-12 75.9 52 73.1
BcaNung04665 Brassica carinata HOM05D007758 ORTHO05D009788 1.3e-12 75.9 52 73.1
Ciclev10023239m.g Citrus clementina HOM05D007758 ORTHO05D009788 1.3e-12 75.9 53 67.9
MELO3C003346.2 Cucumis melo HOM05D007758 ORTHO05D009788 1.6e-12 75.5 59 66.1
TAR633G2270 Trochodendron aralioides HOM05D007758 ORTHO05D009788 1.6e-12 75.5 53 71.7
AT4G17085 Arabidopsis thaliana HOM05D007758 ORTHO05D009788 2.2e-12 75.1 54 70.4
BraA08t33271Z Brassica rapa HOM05D007758 ORTHO05D009788 2.2e-12 75.1 54 70.4
Thhalv10026742m.g Eutrema salsugineum HOM05D007758 ORTHO05D009788 2.2e-12 75.1 54 70.4
unitig_744.g24437 Utricularia gibba HOM05D007758 ORTHO05D009788 2.2e-12 75.1 92 50.0
CiPaw.02G038300 Carya illinoinensis HOM05D007758 ORTHO05D009788 3.7e-12 74.3 55 67.3
Glyma.05G067900 Glycine max HOM05D007758 ORTHO05D009788 3.7e-12 74.3 53 66.0
Carub.0007s2429 Capsella rubella HOM05D007758 ORTHO05D009788 4.8e-12 73.9 54 68.5
CiPaw.09G190000 Carya illinoinensis HOM05D007758 ORTHO05D009788 4.8e-12 73.9 55 67.3
TAR629G0116 Trochodendron aralioides HOM05D007758 ORTHO05D009788 4.8e-12 73.9 49 77.6
Glyma.17G150000 Glycine max HOM05D007758 ORTHO05D009788 8.2e-12 73.2 60 61.7
TWI60G0956 Tripterygium wilfordii HOM05D007758 ORTHO05D009788 8.2e-12 73.2 54 70.4
arahy.Tifrunner.gnm1.ann1.EY31BM Arachis hypogaea HOM05D007758 ORTHO05D009788 1.1e-11 72.8 53 71.7
Lalb_Chr09g0329711 Lupinus albus HOM05D007758 ORTHO05D009788 1.1e-11 72.8 60 66.7
PSO782G2991 Papaver somniferum HOM05D007758 ORTHO05D009788 1.1e-11 72.8 54 63.0
CiPaw.14G095500 Carya illinoinensis HOM05D007758 ORTHO05D009788 1.4e-11 72.4 55 65.5
Ca_03905_v3 Cicer arietinum L. HOM05D000421 ORTHO05D009788 1.4e-11 72.4 45 80.0
Lj4g0024059 Lotus japonicus HOM05D007758 ORTHO05D009788 1.4e-11 72.4 47 72.3
Medtr3g053460 Medicago truncatula HOM05D007758 ORTHO05D009788 1.4e-11 72.4 60 65.0
arahy.Tifrunner.gnm1.ann1.24R365 Arachis hypogaea HOM05D007758 ORTHO05D009788 1.8e-11 72.0 60 63.3
CiPaw.10G048600 Carya illinoinensis HOM05D007758 ORTHO05D009788 1.8e-11 72.0 55 67.3
Medtr4g099120 Medicago truncatula HOM05D007758 ORTHO05D009788 1.8e-11 72.0 60 65.0
Nitab4.5_0010949g0010 Nicotiana tabacum HOM05D007758 ORTHO05D009788 3.1e-11 71.2 60 65.0
A03p50300 Brassica napus HOM05D007758 ORTHO05D009788 4.1e-11 70.9 53 71.7
BraA03t14119Z Brassica rapa HOM05D007758 ORTHO05D009788 4.1e-11 70.9 53 71.7
TPR.G17254 Trifolium pratense HOM05D007758 ORTHO05D009788 4.1e-11 70.9 55 65.5
FAN08G1799 Fragaria x ananassa HOM05D007758 ORTHO05D009788 5.3e-11 70.5 58 69.0
Psat4g076760 Pisum sativum HOM05D007758 ORTHO05D009788 5.3e-11 70.5 45 75.6
C07p48590 Brassica napus HOM05D007758 ORTHO05D009788 6.9e-11 70.1 53 71.7
BolC7t45367H Brassica oleracea HOM05D007758 ORTHO05D009788 6.9e-11 70.1 53 71.7
Atru.chr9.1149 Acer truncatum HOM05D007758 ORTHO05D009788 9.1e-11 69.7 47 68.1
CiPaw.14G095700 Carya illinoinensis HOM05D007758 ORTHO05D009788 1.2e-10 69.3 52 65.4
Haze_08336 Corylus avellana HOM05D007758 ORTHO05D009788 1.0e-09 66.2 40 75.0
Zm00001eb180740 Zea mays HOM05D007758 ORTHO05D009788 2.2e-09 65.1 62 56.5
Potri.003G085400 Populus trichocarpa HOM05D007758 ORTHO05D009788 3.8e-09 64.3 70 54.3
RcHm_v2.0_Chr7g0205921 Rosa chinensis HOM05D007758 ORTHO05D009788 3.2e-08 61.2 60 58.3
BolC7t45365H Brassica oleracea HOM05D007758 ORTHO05D009788 1.6e-07 58.9 34 82.4


User provided reference genes

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