Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g01260 Coffea canephora HOM05D007388 ORTHO05D009421 3.1e-106 388.7 221 100.0
Oeu000765.1 Olea europaea HOM05D007388 ORTHO05D009421 2.3e-53 213.0 155 69.7
Gohir.A05G039100 Gossypium hirsutum HOM05D007388 ORTHO05D009421 5.7e-52 208.4 152 73.7
Gorai.009G041100 Gossypium raimondii HOM05D007388 ORTHO05D009421 5.7e-52 208.4 152 73.7
MSTRG.25983 Avicennia marina HOM05D007388 ORTHO05D009421 1.7e-51 206.8 159 69.2
Gohir.D05G040600 Gossypium hirsutum HOM05D007388 ORTHO05D009421 4.8e-51 205.3 152 73.0
COL.COLO4_21128 Corchorus olitorius HOM05D007388 ORTHO05D009421 4.5e-49 198.7 155 65.8
TAR383G1008 Trochodendron aralioides HOM05D007388 ORTHO05D009421 3.8e-48 195.7 154 67.5
Prupe.1G405600 Prunus persica HOM05D007388 ORTHO05D009421 6.5e-48 194.9 153 66.7
PGR044G0912 Punica granatum HOM05D007388 ORTHO05D009421 8.5e-48 194.5 154 65.6
Duzib168G1804 Durio zibethinus HOM05D007388 ORTHO05D009421 1.1e-47 194.1 153 66.0
Peaxi162Scf00596g00105 Petunia axillaris HOM05D007388 ORTHO05D009421 1.1e-47 194.1 157 63.7
Thecc.09G062100 Theobroma cacao HOM05D007388 ORTHO05D009421 1.5e-47 193.7 151 67.5
Dinv41838 Davidia involucrata HOM05D007388 ORTHO05D009421 2.5e-47 193.0 173 62.4
Nn8g38703 Nelumbo nucifera HOM05D007388 ORTHO05D009421 2.5e-47 193.0 154 66.9
Ciclev10009451m.g Citrus clementina HOM05D007388 ORTHO05D009421 3.2e-47 192.6 154 66.9
Migut.A00083 Erythranthe guttata HOM05D007388 ORTHO05D009421 1.2e-46 190.7 158 61.4
GSVIVG01035454001 Vitis vinifera HOM05D007388 ORTHO05D009421 3.6e-46 189.1 154 66.9
MD15G1051600 Malus domestica HOM05D007388 ORTHO05D009421 4.7e-46 188.7 153 62.1
AUR62020582 Chenopodium quinoa HOM05D007388 ORTHO05D009421 1.0e-45 187.6 153 68.0
Nitab4.5_0001705g0020 Nicotiana tabacum HOM05D007388 ORTHO05D009421 1.0e-45 187.6 159 61.0
Atru.chr7.1857 Acer truncatum HOM05D007388 ORTHO05D009421 1.8e-45 186.8 174 58.0
Lsat_1_v5_gn_7_58400 Lactuca sativa HOM05D007388 ORTHO05D009421 1.8e-45 186.8 166 62.7
AUR62009088 Chenopodium quinoa HOM05D007388 ORTHO05D009421 2.3e-45 186.4 178 61.2
Eucgr.C03150 Eucalyptus grandis HOM05D007388 ORTHO05D009421 2.3e-45 186.4 154 62.3
ECA240G1505 Erigeron canadensis HOM05D007388 ORTHO05D009421 4.0e-45 185.7 172 57.0
CSS0004113 Camellia sinensis var. sinensis HOM05D007388 ORTHO05D009421 1.2e-44 184.1 136 64.7
RcHm_v2.0_Chr6g0311651 Rosa chinensis HOM05D007388 ORTHO05D009421 4.4e-44 182.2 173 59.0
FvH4_2g31130 Fragaria vesca HOM05D007388 ORTHO05D009421 7.5e-44 181.4 151 62.3
FAN27G0155 Fragaria x ananassa HOM05D007388 ORTHO05D009421 9.8e-44 181.0 159 60.4
TWI63G1062 Tripterygium wilfordii HOM05D007388 ORTHO05D009421 9.8e-44 181.0 145 66.2
MELO3C016910.2 Cucumis melo HOM05D007388 ORTHO05D009421 1.7e-43 180.3 149 63.8
CAN.G246.5 Capsicum annuum HOM05D007388 ORTHO05D009421 2.8e-43 179.5 151 60.9
CsaV3_4G036020 Cucumis sativus L. HOM05D007388 ORTHO05D009421 8.3e-43 177.9 149 63.1
FAN20G0472 Fragaria x ananassa HOM05D007388 ORTHO05D009421 8.3e-43 177.9 151 61.6
FAN24G3326 Fragaria x ananassa HOM05D007388 ORTHO05D009421 8.3e-43 177.9 147 62.6
Actinidia25694 Actinidia chinensis HOM05D007388 ORTHO05D009421 1.4e-42 177.2 148 60.8
Potri.006G221900 Populus trichocarpa HOM05D007388 ORTHO05D009421 1.8e-42 176.8 153 63.4
Sabra06G0171500 Salix brachista HOM05D007388 ORTHO05D009421 1.8e-42 176.8 153 62.7
Lalb_Chr11g0063321 Lupinus albus HOM05D007388 ORTHO05D009421 2.4e-42 176.4 144 65.3
THA.LOC104799581 Tarenaya hassleriana HOM05D007388 ORTHO05D009421 4.1e-42 175.6 155 58.7
BcaB08g36472 Brassica carinata HOM05D007388 ORTHO05D009421 5.4e-42 175.3 166 54.2
Solyc06g082970.3 Solanum lycopersicum HOM05D007388 ORTHO05D009421 9.2e-42 174.5 159 57.2
Sopen06g034360 Solanum pennellii HOM05D007388 ORTHO05D009421 9.2e-42 174.5 157 58.0
ClCG05G015710 Citrullus lanatus HOM05D007388 ORTHO05D009421 1.6e-41 173.7 172 57.0
PGSC0003DMG400027673 Solanum tuberosum HOM05D007388 ORTHO05D009421 2.0e-41 173.3 157 58.6
Manes.16G084900 Manihot esculenta HOM05D007388 ORTHO05D009421 2.7e-41 172.9 154 59.1
Cfa018015 Carpinus fangiana HOM05D007388 ORTHO05D009421 3.5e-41 172.6 146 63.0
HanXRQChr04g0097861 Helianthus annuus HOM05D007388 ORTHO05D009421 3.5e-41 172.6 151 62.9
AT5G21430 Arabidopsis thaliana HOM05D007388 ORTHO05D009421 4.5e-41 172.2 166 54.2
BcaC04g19512 Brassica carinata HOM05D007388 ORTHO05D009421 1.0e-40 171.0 163 53.4
C09p54850 Brassica napus HOM05D007388 ORTHO05D009421 1.0e-40 171.0 163 53.4
BolC9t58346H Brassica oleracea HOM05D007388 ORTHO05D009421 1.0e-40 171.0 163 53.4
CiPaw.16G070200 Carya illinoinensis HOM05D007388 ORTHO05D009421 1.7e-40 170.2 156 59.0
A10p18840 Brassica napus HOM05D007388 ORTHO05D009421 2.3e-40 169.9 163 52.8
Aqoxy7G01075 Aquilegia oxysepala HOM05D007388 ORTHO05D009421 3.8e-40 169.1 147 61.9
Sed0027665 Sechium edule HOM05D007388 ORTHO05D009421 6.6e-40 168.3 143 64.3
BraA10t43964Z Brassica rapa HOM05D007388 ORTHO05D009421 8.6e-40 167.9 163 52.8
QL02p016663 Quercus lobata HOM05D007388 ORTHO05D009421 1.1e-39 167.5 154 58.4
CDE07G0202 Ceratophyllum demersum HOM05D007388 ORTHO05D001048 1.9e-39 166.8 142 62.0
MBI19_g11844_MAGBIO Magnolia biondii HOM05D007388 ORTHO05D009421 1.9e-39 166.8 112 73.2
AL6G32850 Arabidopsis lyrata HOM05D007388 ORTHO05D009421 2.5e-39 166.4 147 59.2
Carub.0006s1952 Capsella rubella HOM05D007388 ORTHO05D009421 3.3e-39 166.0 166 53.0
Lj1g0010451 Lotus japonicus HOM05D007388 ORTHO05D009421 7.3e-39 164.9 154 59.1
CDE06G1148 Ceratophyllum demersum HOM05D007388 ORTHO05D009421 9.5e-39 164.5 119 68.9
Thhalv10014636m.g Eutrema salsugineum HOM05D007388 ORTHO05D009421 9.5e-39 164.5 137 59.9
Sp6g23310 Schrenkiella parvula HOM05D007388 ORTHO05D009421 2.8e-38 162.9 163 50.3
ATR0598G070 Amborella trichopoda HOM05D007388 ORTHO05D009421 3.6e-38 162.5 165 54.5
Ca_15836_v3 Cicer arietinum L. HOM05D007388 ORTHO05D009421 3.6e-38 162.5 153 56.9
Rhsim10G0152000 Rhododendron simsii HOM05D007388 ORTHO05D009421 4.7e-38 162.2 111 64.9
Glyma.04G055400 Glycine max HOM05D007388 ORTHO05D009421 1.4e-37 160.6 159 58.5
Medtr3g104980 Medicago truncatula HOM05D007388 ORTHO05D009421 2.3e-37 159.8 156 55.8
CARHR191660 Cardamine hirsuta HOM05D007388 ORTHO05D009421 3.0e-37 159.5 168 53.0
Aa31LG1G13520 Aethionema arabicum HOM05D007388 ORTHO05D009421 5.2e-37 158.7 158 53.8
Phvul.009G081500 Phaseolus vulgaris HOM05D007388 ORTHO05D009421 8.9e-37 157.9 155 56.8
PSO421G0687 Papaver somniferum HOM05D007388 ORTHO05D009421 1.2e-36 157.5 149 56.4
Psat5g102720 Pisum sativum HOM05D007388 ORTHO05D009421 1.5e-36 157.1 152 55.9
VMungo1309G3057 Vigna mungo HOM05D007388 ORTHO05D009421 1.5e-36 157.1 153 57.5
Glyma.06G055600 Glycine max HOM05D007388 ORTHO05D009421 2.6e-36 156.4 154 56.5
Atru.BG.20.p Acer truncatum HOM05D007388 ORTHO05D009421 7.5e-36 154.8 98 74.5
TPR.G3529 Trifolium pratense HOM05D007388 ORTHO05D009421 7.5e-36 154.8 156 52.6
EL10Ac2g03792 Beta vulgaris HOM05D007388 ORTHO05D009421 2.2e-35 153.3 98 76.5
arahy.Tifrunner.gnm1.ann1.P6UV73 Arachis hypogaea HOM05D007388 ORTHO05D009421 3.7e-35 152.5 146 56.2
CANSAT25G2576 Cannabis sativa HOM05D007388 ORTHO05D009421 1.8e-34 150.2 113 65.5
DCAR_003716 Daucus carota HOM05D007388 ORTHO05D009421 7.0e-34 148.3 120 58.3
arahy.Tifrunner.gnm1.ann1.044LWD Arachis hypogaea HOM05D000560 ORTHO05D000417 3.5e-33 146.0 146 55.5
Lj7C227T7 Lonicera japonica HOM05D007388 ORTHO05D009421 1.6e-30 137.1 177 48.6
Os12g0498500 Oryza sativa ssp. japonica HOM05D007388 ORTHO05D009421 2.8e-30 136.3 127 56.7
Nitab4.5_0000268g0090 Nicotiana tabacum HOM05D007388 ORTHO05D009421 8.0e-30 134.8 153 50.3
Zm00001eb409580 Zea mays HOM05D007388 ORTHO05D009421 1.2e-28 131.0 141 53.2
Lj7C225T7 Lonicera japonica HOM05D007388 ORTHO05D009421 1.1e-26 124.4 164 48.8
Hma1.2p1_0231F.1_g097390 Hydrangea macrophylla HOM05D007388 ORTHO05D009421 1.9e-23 113.6 106 58.5
unitig_4.g30329 Utricularia gibba HOM05D007388 ORTHO05D009421 2.5e-23 113.2 165 43.0
vmacro12914 Vaccinium macrocarpon HOM05D007388 ORTHO05D009421 9.5e-23 111.3 113 49.6
AagrBONN_evm.TU.Sc2ySwM_368.3296 Anthoceros agrestis HOM05D007388 ORTHO05D009421 1.3e-19 100.9 139 43.2
Pp3c4_14700 Physcomitrium patens HOM05D007388 ORTHO05D009421 1.4e-18 97.4 146 43.8
Pp3c12_9640 Physcomitrium patens HOM05D007388 ORTHO05D009421 6.6e-16 88.6 146 41.1
Mapoly0129s0003 Marchantia polymorpha HOM05D007388 ORTHO05D009421 1.3e-11 74.3 154 35.1
SMO223G0044 Selaginella moellendorffii HOM05D007480 ORTHO05D009460 4.3e-07 59.3 109 33.0
BNapus_Darmor_BZH_scaffold_38p01020 Brassica napus HOM05D007388 ORTHO05D009421 3.6e-06 56.2 45 60.0


User provided reference genes

Program Settings