Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g01150 Coffea canephora HOM05D007323 ORTHO05D009238 5.3e-128 461.1 240 100.0
Dinv41843 Davidia involucrata HOM05D007323 ORTHO05D009238 5.6e-77 291.6 214 69.6
HanXRQChr10g0309971 Helianthus annuus HOM05D007323 ORTHO05D009238 2.4e-72 276.2 243 63.8
Lsat_1_v5_gn_5_79461 Lactuca sativa HOM05D007323 ORTHO05D009238 4.6e-71 271.9 242 61.6
ECA234G0604 Erigeron canadensis HOM05D007323 ORTHO05D009238 6.0e-71 271.6 214 66.8
Actinidia03545 Actinidia chinensis HOM05D007323 ORTHO05D009238 3.9e-70 268.9 212 64.6
PGR031G0894 Punica granatum HOM05D007323 ORTHO05D009238 6.6e-70 268.1 245 62.4
MSTRG.25986 Avicennia marina HOM05D007323 ORTHO05D009238 1.5e-69 266.9 223 65.0
SGA_v2.0_scaffold20G09163 Striga asiatica HOM05D007323 ORTHO05D009238 1.9e-69 266.5 234 62.0
Sc06g0001110 Simmondsia chinensis HOM05D007323 ORTHO05D009238 5.6e-69 265.0 199 68.3
Lj1g0021270 Lotus japonicus HOM05D007323 ORTHO05D009238 7.3e-69 264.6 233 63.5
COL.COLO4_21139 Corchorus olitorius HOM05D007323 ORTHO05D009238 1.6e-68 263.5 239 60.3
Sopen08g017220 Solanum pennellii HOM05D007323 ORTHO05D009238 1.6e-68 263.5 240 63.3
GSVIVG01035470001 Vitis vinifera HOM05D007323 ORTHO05D009238 2.8e-68 262.7 182 70.9
Manes.16G085700 Manihot esculenta HOM05D007323 ORTHO05D009238 4.7e-68 261.9 241 60.2
Sabra06G0170600 Salix brachista HOM05D007323 ORTHO05D009238 4.7e-68 261.9 194 69.1
Potri.006G220800 Populus trichocarpa HOM05D007323 ORTHO05D009238 6.2e-68 261.5 194 69.1
Ciclev10009314m.g Citrus clementina HOM05D007323 ORTHO05D009238 3.1e-67 259.2 244 58.6
Thecc.09G063400 Theobroma cacao HOM05D007323 ORTHO05D009238 4.0e-67 258.8 242 60.7
QL02p017014 Quercus lobata HOM05D007323 ORTHO05D009238 5.2e-67 258.5 195 68.7
Nitab4.5_0000446g0180 Nicotiana tabacum HOM05D007323 ORTHO05D009238 6.8e-67 258.1 237 60.8
Nitab4.5_0002831g0040 Nicotiana tabacum HOM05D007323 ORTHO05D009238 8.9e-67 257.7 239 60.3
Rhsim10G0107900 Rhododendron simsii HOM05D007323 ORTHO05D009238 2.0e-66 256.5 175 74.3
Cfa017873 Carpinus fangiana HOM05D007323 ORTHO05D009238 3.4e-66 255.8 240 62.5
Duzib150G1239 Durio zibethinus HOM05D007323 ORTHO05D009238 3.4e-66 255.8 242 59.1
Glyma.06G055900 Glycine max HOM05D007323 ORTHO05D009238 5.8e-66 255.0 232 61.2
RcHm_v2.0_Chr6g0311811 Rosa chinensis HOM05D007323 ORTHO05D009238 5.8e-66 255.0 240 59.6
FAN20G2477 Fragaria x ananassa HOM05D007323 ORTHO05D009238 7.6e-66 254.6 241 60.6
Nn8g38659 Nelumbo nucifera HOM05D007323 ORTHO05D009238 1.3e-65 253.8 218 61.9
TWI34G0887 Tripterygium wilfordii HOM05D007323 ORTHO05D009238 1.7e-65 253.4 243 58.4
CiPaw.16G068300 Carya illinoinensis HOM05D007323 ORTHO05D009238 2.9e-65 252.7 240 59.6
Migut.A00078 Erythranthe guttata HOM05D007323 ORTHO05D009238 2.9e-65 252.7 215 63.7
FAN27G1709 Fragaria x ananassa HOM05D007323 ORTHO05D009238 3.8e-65 252.3 241 59.8
Lalb_Chr08g0244811 Lupinus albus HOM05D007323 ORTHO05D009238 3.8e-65 252.3 208 64.9
MD15G1049800 Malus domestica HOM05D007323 ORTHO05D009238 8.4e-65 251.1 243 60.5
Prupe.1G404100 Prunus persica HOM05D007323 ORTHO05D009238 1.1e-64 250.8 243 59.3
CANSAT25G3877 Cannabis sativa HOM05D007323 ORTHO05D009238 1.9e-64 250.0 236 57.2
VMungo1309G0522 Vigna mungo HOM05D007323 ORTHO05D009238 1.9e-64 250.0 241 60.6
FvH4_2g30980 Fragaria vesca HOM05D007323 ORTHO05D009238 4.1e-64 248.8 241 58.9
Sed0017686 Sechium edule HOM05D007323 ORTHO05D009238 4.1e-64 248.8 220 63.6
vmacro05236 Vaccinium macrocarpon HOM05D007323 ORTHO05D009238 4.1e-64 248.8 173 72.8
Phvul.009G082000 Phaseolus vulgaris HOM05D007323 ORTHO05D009238 7.1e-64 248.1 241 61.0
FAN24G0989 Fragaria x ananassa HOM05D007323 ORTHO05D009238 1.2e-63 247.3 241 58.9
DCAR_007767 Daucus carota HOM05D007323 ORTHO05D009238 6.0e-63 245.0 237 60.8
unitig_8.g4975 Utricularia gibba HOM05D007323 ORTHO05D009238 6.0e-63 245.0 207 64.3
Gorai.001G020100 Gossypium raimondii HOM05D007323 ORTHO05D009238 1.3e-62 243.8 219 61.6
Aqoxy7G01049 Aquilegia oxysepala HOM05D007323 ORTHO05D009238 5.1e-62 241.9 217 61.3
arahy.Tifrunner.gnm1.ann1.7DEW7H Arachis hypogaea HOM05D007323 ORTHO05D009238 8.6e-62 241.1 196 67.3
ClCG08G009880 Citrullus lanatus HOM05D007323 ORTHO05D009238 1.5e-61 240.4 245 58.4
EL10Ac2g03780 Beta vulgaris HOM05D007323 ORTHO05D009238 4.3e-61 238.8 241 57.3
Medtr3g105050 Medicago truncatula HOM05D007323 ORTHO05D009238 4.3e-61 238.8 229 58.5
Eucgr.B01965 Eucalyptus grandis HOM05D007323 ORTHO05D009238 7.3e-61 238.0 197 64.5
Ca_15835_v3 Cicer arietinum L. HOM05D007323 ORTHO05D009238 1.6e-60 236.9 206 63.6
TPR.G3557 Trifolium pratense HOM05D007323 ORTHO05D009238 2.1e-60 236.5 229 58.5
Haze_18294 Corylus avellana HOM05D007323 ORTHO05D009238 2.8e-60 236.1 290 52.1
MELO3C011483.2 Cucumis melo HOM05D007323 ORTHO05D009238 4.7e-60 235.3 220 61.4
Gohir.D07G019400 Gossypium hirsutum HOM05D007323 ORTHO05D009238 6.2e-60 235.0 219 61.2
Hund03297 Selenicereus undatus HOM05D007323 ORTHO05D009238 1.4e-59 233.8 196 64.8
PSO421G0353 Papaver somniferum HOM05D007323 ORTHO05D009238 1.8e-59 233.4 237 54.9
Atru.chr7.1847 Acer truncatum HOM05D007323 ORTHO05D009238 2.4e-59 233.0 172 68.0
CsaV3_6G031970 Cucumis sativus L. HOM05D007323 ORTHO05D009238 4.0e-59 232.3 220 60.5
HPP92_024332 Vanilla planifolia HOM05D007323 ORTHO05D009238 2.6e-58 229.6 186 67.2
PSO063G6894 Papaver somniferum HOM05D007323 ORTHO05D009238 9.9e-58 227.6 219 55.7
arahy.Tifrunner.gnm1.ann1.287SRD Arachis hypogaea HOM05D007323 ORTHO05D009238 1.7e-57 226.9 203 63.5
CDE05G0862 Ceratophyllum demersum HOM05D007323 ORTHO05D009238 1.7e-57 226.9 200 60.0
ATR0598G133 Amborella trichopoda HOM05D007323 ORTHO05D009238 6.4e-57 224.9 175 65.1
THA.LOC104819519 Tarenaya hassleriana HOM05D007323 ORTHO05D009238 8.4e-57 224.6 205 58.5
Thhalv10002091m.g Eutrema salsugineum HOM05D007323 ORTHO05D009238 4.6e-55 218.8 231 54.5
AL4G18960 Arabidopsis lyrata HOM05D007323 ORTHO05D009238 6.0e-55 218.4 229 53.3
Carub.0004s0625 Capsella rubella HOM05D007323 ORTHO05D009238 6.0e-55 218.4 234 51.3
Gohir.A07G019600 Gossypium hirsutum HOM05D007323 ORTHO05D009238 6.0e-55 218.4 192 61.5
BraA09t40931Z Brassica rapa HOM05D007323 ORTHO05D009238 1.7e-54 216.9 233 51.5
Os03g0176700 Oryza sativa ssp. japonica HOM05D007323 ORTHO05D009238 1.7e-54 216.9 169 67.5
Sp4g06990 Schrenkiella parvula HOM05D007323 ORTHO05D009238 1.7e-54 216.9 230 51.7
A09p55240 Brassica napus HOM05D007323 ORTHO05D009238 3.0e-54 216.1 235 51.5
BcaC07g40825 Brassica carinata HOM05D007323 ORTHO05D009238 8.7e-54 214.5 228 52.2
C08p38170 Brassica napus HOM05D007323 ORTHO05D009238 8.7e-54 214.5 228 52.2
BolC8t51392H Brassica oleracea HOM05D007323 ORTHO05D009238 8.7e-54 214.5 228 52.2
Zm00001eb005760 Zea mays HOM05D007323 ORTHO05D009238 4.8e-52 208.8 148 70.3
Aa31LG2G12250 Aethionema arabicum HOM05D007323 ORTHO05D009238 8.1e-52 208.0 206 55.3
BcaB08g35255 Brassica carinata HOM05D007323 ORTHO05D009238 8.1e-52 208.0 228 51.8
AT2G26340 Arabidopsis thaliana HOM05D007323 ORTHO05D009238 1.4e-51 207.2 231 53.7
CARHR118450 Cardamine hirsuta HOM05D007323 ORTHO05D009238 1.2e-50 204.1 177 58.8
Peaxi162Scf00486g01025 Petunia axillaris HOM05D007323 ORTHO05D009238 2.6e-50 203.0 236 51.3
SEGI_00918 Sequoiadendron giganteum HOM05D007323 ORTHO05D009238 2.2e-49 199.9 194 57.7
AUR62009079 Chenopodium quinoa HOM05D007323 ORTHO05D009238 7.1e-48 194.9 162 64.8
AagrBONN_evm.TU.Sc2ySwM_228.4439 Anthoceros agrestis HOM05D007323 ORTHO05D009238 3.5e-47 192.6 239 45.2
Psat5g030560 Pisum sativum HOM05D007323 ORTHO05D009238 6.7e-46 188.3 186 57.0
A09p54710 Brassica napus HOM05D007323 ORTHO05D009238 1.5e-45 187.2 172 57.0
Pp3c4_13280 Physcomitrium patens HOM05D007323 ORTHO05D009238 3.1e-43 179.5 197 50.8
TAR636G1368 Trochodendron aralioides HOM05D007323 ORTHO05D009238 4.5e-42 175.6 188 54.3
Eucgr.B01870 Eucalyptus grandis HOM05D007323 ORTHO05D009238 4.9e-41 172.2 135 67.4
AUR62020587 Chenopodium quinoa HOM05D007323 ORTHO05D009238 1.5e-37 160.6 240 47.1
SMO239G0030 Selaginella moellendorffii HOM05D007323 ORTHO05D009238 2.5e-37 159.8 192 45.8
Mapoly0001s0019 Marchantia polymorpha HOM05D007323 ORTHO05D009238 9.6e-37 157.9 180 48.3
MBI13_g42814_MAGBIO Magnolia biondii HOM05D007323 ORTHO05D009238 2.0e-34 150.2 328 35.1
CSS0001075 Camellia sinensis var. sinensis HOM05D007323 ORTHO05D009238 7.6e-34 148.3 104 75.0
CSS0018719 Camellia sinensis var. sinensis HOM05D007323 ORTHO05D009238 7.6e-34 148.3 104 75.0
Cpa.g.sc126.24 Carica papaya HOM05D007323 ORTHO05D009238 1.2e-31 141.0 104 72.1
CBR_g19268 Chara braunii HOM05D007323 ORTHO05D009238 2.4e-27 126.7 150 46.0
Cre16.g684150 Chlamydomonas reinhardtii HOM05D007323 ORTHO05D009238 7.7e-18 95.1 182 35.2
MD08G1071400 Malus domestica HOM05D007323 ORTHO05D009238 3.2e-16 89.7 62 75.8
Solyc08g061800.3 Solanum lycopersicum HOM05D007323 ORTHO05D009238 1.5e-13 80.9 104 51.0
Os03g0176800 Oryza sativa ssp. japonica HOM05D009542 ORTHO05D294036 7.7e-10 68.6 134 31.3


User provided reference genes

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