Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g01120 Coffea canephora HOM05D007692 ORTHO05D009696 2.2e-69 265.8 161 100.0
Peaxi162Scf00486g00102 Petunia axillaris HOM05D007692 ORTHO05D009696 7.2e-20 101.3 100 54.0
Nitab4.5_0008422g0010 Nicotiana tabacum HOM05D007692 ORTHO05D009696 2.1e-19 99.8 101 52.5
Solyc08g061640.1 Solanum lycopersicum HOM05D007692 ORTHO05D009696 3.6e-19 99.0 101 52.5
Sopen08g017100 Solanum pennellii HOM05D007692 ORTHO05D009696 3.6e-19 99.0 101 52.5
PGSC0003DMG400045083 Solanum tuberosum HOM05D007692 ORTHO05D009696 3.6e-19 99.0 101 52.5
CAN.G567.82 Capsicum annuum HOM05D007692 ORTHO05D009696 6.1e-19 98.2 98 54.1
Nitab4.5_0000446g0120 Nicotiana tabacum HOM05D007692 ORTHO05D009696 1.0e-18 97.4 101 50.5
MD15G1049600 Malus domestica HOM05D007692 ORTHO05D009696 3.9e-18 95.5 112 50.9
MD08G1071600 Malus domestica HOM05D007692 ORTHO05D009696 4.4e-17 92.0 113 52.2
Cpa.g.sc126.21 Carica papaya HOM05D007692 ORTHO05D009696 7.4e-17 91.3 111 46.8
RcHm_v2.0_Chr6g0311901 Rosa chinensis HOM05D007692 ORTHO05D009696 7.4e-17 91.3 112 50.0
Nn2g12400 Nelumbo nucifera HOM05D007692 ORTHO05D009696 1.3e-16 90.5 99 47.5
QL02p017055 Quercus lobata HOM05D007692 ORTHO05D009696 1.7e-16 90.1 111 46.8
FvH4_2g30960 Fragaria vesca HOM05D007692 ORTHO05D009696 2.2e-16 89.7 112 49.1
QL02p017043 Quercus lobata HOM05D007692 ORTHO05D009696 2.2e-16 89.7 109 46.8
COL.COLO4_21142 Corchorus olitorius HOM05D007692 ORTHO05D009696 3.7e-16 89.0 104 47.1
CANSAT25G1329 Cannabis sativa HOM05D007692 ORTHO05D009696 6.3e-16 88.2 111 49.5
Prupe.1G403900 Prunus persica HOM05D007692 ORTHO05D009696 6.3e-16 88.2 108 49.1
TAR624G0897 Trochodendron aralioides HOM05D007692 ORTHO05D009696 8.2e-16 87.8 109 46.8
Hma1.2p1_0278F.1_g111850 Hydrangea macrophylla HOM05D007692 ORTHO05D009696 1.1e-15 87.4 106 47.2
PGR031G0311 Punica granatum HOM05D007692 ORTHO05D009696 1.1e-15 87.4 104 50.0
Oeu003971.1 Olea europaea HOM05D007692 ORTHO05D009696 1.4e-15 87.0 112 42.9
Sabra06G0170400 Salix brachista HOM05D007692 ORTHO05D009696 1.4e-15 87.0 111 46.8
SGA_v2.0_scaffold20G09157 Striga asiatica HOM05D006390 ORTHO05D007899 1.4e-15 87.0 122 43.4
Thecc.09G063700 Theobroma cacao HOM05D007692 ORTHO05D009696 1.8e-15 86.7 104 47.1
DCAR_001232 Daucus carota HOM05D006390 ORTHO05D007899 4.1e-15 85.5 134 39.6
Duzib168G1711 Durio zibethinus HOM05D007692 ORTHO05D009696 9.1e-15 84.3 104 46.2
CiPaw.15G091700 Carya illinoinensis HOM05D007692 ORTHO05D009696 1.2e-14 84.0 113 45.1
PSO675G1902 Papaver somniferum HOM05D007692 ORTHO05D009696 1.2e-14 84.0 104 46.2
Glyma.17G225900 Glycine max HOM05D007692 ORTHO05D009696 1.5e-14 83.6 111 51.4
Psat6g022960 Pisum sativum HOM05D007692 ORTHO05D009696 3.4e-14 82.4 104 47.1
Potri.006G220500 Populus trichocarpa HOM05D007692 ORTHO05D009696 3.4e-14 82.4 111 44.1
TPR.G38893 Trifolium pratense HOM05D007692 ORTHO05D009696 3.4e-14 82.4 111 44.1
arahy.Tifrunner.gnm1.ann1.0E4SK3 Arachis hypogaea HOM05D007692 ORTHO05D009696 5.9e-14 81.6 112 47.3
A10p18810 Brassica napus HOM05D007692 ORTHO05D009696 1.0e-13 80.9 106 44.3
BraA10t43961Z Brassica rapa HOM05D007692 ORTHO05D009696 1.0e-13 80.9 106 44.3
PSO541G2080 Papaver somniferum HOM05D007692 ORTHO05D009696 1.3e-13 80.5 104 45.2
C09p54830 Brassica napus HOM05D007692 ORTHO05D009696 1.7e-13 80.1 103 44.7
BolC9t58343H Brassica oleracea HOM05D007692 ORTHO05D009696 1.7e-13 80.1 103 44.7
CARHR191630 Cardamine hirsuta HOM05D007692 ORTHO05D009696 1.7e-13 80.1 110 43.6
Ciclev10010178m.g Citrus clementina HOM05D007692 ORTHO05D009696 1.7e-13 80.1 111 50.5
SalBow4G0926 Salvia bowleyana HOM05D007692 ORTHO05D009696 1.7e-13 80.1 110 40.0
Glyma.06G056100 Glycine max HOM05D007692 ORTHO05D009696 2.2e-13 79.7 104 47.1
Lj5g0021751 Lotus japonicus HOM05D007692 ORTHO05D009696 2.2e-13 79.7 111 45.0
Medtr1g015470 Medicago truncatula HOM05D007692 ORTHO05D009696 2.2e-13 79.7 111 43.2
Manes.16G085800 Manihot esculenta HOM05D007692 ORTHO05D009696 3.8e-13 79.0 104 46.2
Lj1g0020593 Lotus japonicus HOM05D007692 ORTHO05D009696 8.5e-13 77.8 112 62.5
THA.LOC104810956 Tarenaya hassleriana HOM05D007692 ORTHO05D009696 1.1e-12 77.4 110 35.5
BcaB08g36470 Brassica carinata HOM05D007692 ORTHO05D009696 1.4e-12 77.0 103 42.7
MBI13_g42817_MAGBIO Magnolia biondii HOM05D007692 ORTHO05D009696 1.4e-12 77.0 101 46.5
Haze_18297 Corylus avellana HOM05D007692 ORTHO05D009696 1.9e-12 76.6 109 44.0
VMungo0647G2522 Vigna mungo HOM05D007692 ORTHO05D009696 1.9e-12 76.6 111 44.1
Dinv22937 Davidia involucrata HOM05D007692 ORTHO05D009696 2.5e-12 76.3 124 40.3
Cfa017868 Carpinus fangiana HOM05D007692 ORTHO05D009696 5.5e-12 75.1 113 45.1
Gohir.D05G040100 Gossypium hirsutum HOM05D007692 ORTHO05D009696 1.2e-11 73.9 105 44.8
Gorai.009G040500 Gossypium raimondii HOM05D007692 ORTHO05D009696 1.2e-11 73.9 105 44.8
TWI63G1278 Tripterygium wilfordii HOM05D007692 ORTHO05D009696 1.2e-11 73.9 111 39.6
VMungo1309G1304 Vigna mungo HOM05D007692 ORTHO05D009696 1.6e-11 73.6 111 42.3
Ah.11g044290 Amaranthus hybridus HOM05D007692 ORTHO05D009696 2.1e-11 73.2 110 47.3
ClCG05G015760 Citrullus lanatus HOM05D007692 ORTHO05D009696 2.7e-11 72.8 109 45.9
Gohir.A05G038600 Gossypium hirsutum HOM05D007692 ORTHO05D009696 3.6e-11 72.4 104 42.3
Sc06g0001120 Simmondsia chinensis HOM05D007692 ORTHO05D009696 3.6e-11 72.4 106 41.5
TPR.G3568 Trifolium pratense HOM05D007692 ORTHO05D009696 8.0e-11 71.2 113 38.9
Eucgr.C00729 Eucalyptus grandis HOM05D007692 ORTHO05D009696 1.0e-10 70.9 113 40.7
Phvul.009G082200 Phaseolus vulgaris HOM05D007692 ORTHO05D009696 1.0e-10 70.9 111 41.4
MELO3C016914.2 Cucumis melo HOM05D007692 ORTHO05D009696 1.4e-10 70.5 111 45.9
CsaV3_4G036060 Cucumis sativus L. HOM05D007692 ORTHO05D009696 1.4e-10 70.5 111 45.9
EL10Ac2g03778 Beta vulgaris HOM05D007692 ORTHO05D009696 2.3e-10 69.7 107 43.9
Carub.0006s1955 Capsella rubella HOM05D007692 ORTHO05D009696 2.3e-10 69.7 111 51.4
Sp6g23280 Schrenkiella parvula HOM05D007692 ORTHO05D009696 2.3e-10 69.7 94 50.0
Nn8g39911 Nelumbo nucifera HOM05D007692 ORTHO05D009696 3.0e-10 69.3 101 41.6
CSS0041722 Camellia sinensis var. sinensis HOM05D007692 ORTHO05D009696 3.9e-10 68.9 91 44.0
Aqoxy2G03896 Aquilegia oxysepala HOM05D007692 ORTHO05D009696 5.2e-10 68.6 104 47.1
HanXRQChr03g0065641 Helianthus annuus HOM05D007692 ORTHO05D009696 5.2e-10 68.6 105 54.3
Lsat_1_v5_gn_7_58320 Lactuca sativa HOM05D006390 ORTHO05D007899 6.7e-10 68.2 125 37.6
Phvul.001G038600 Phaseolus vulgaris HOM05D007692 ORTHO05D009696 8.8e-10 67.8 97 46.4
AT5G21910 Arabidopsis thaliana HOM05D007692 ORTHO05D009696 1.1e-09 67.4 95 55.8
Thhalv10015977m.g Eutrema salsugineum HOM05D007692 ORTHO05D009696 1.1e-09 67.4 104 37.5
Carub.0005s0963 Capsella rubella HOM05D007692 ORTHO05D009696 2.6e-09 66.2 94 60.6
ECA240G2866 Erigeron canadensis HOM05D000002 ORTHO05D000001 3.3e-09 65.9 108 38.9
Lalb_Chr11g0063341 Lupinus albus HOM05D007692 ORTHO05D009696 7.4e-09 64.7 104 48.1
Os03g0176900 Oryza sativa ssp. japonica HOM05D007692 ORTHO05D009696 7.4e-09 64.7 104 55.8
unitig_32.g11527 Utricularia gibba HOM05D007692 ORTHO05D009696 7.4e-09 64.7 105 36.2
Medtr3g105090 Medicago truncatula HOM05D007692 ORTHO05D009696 9.7e-09 64.3 112 36.6
HPP92_004156 Vanilla planifolia HOM05D007692 ORTHO05D009696 1.7e-08 63.5 102 36.3
Zm00001eb005780 Zea mays HOM05D007692 ORTHO05D009696 2.2e-08 63.2 102 43.1
Medtr1g015490 Medicago truncatula HOM05D007692 ORTHO05D009696 1.1e-07 60.8 108 38.9
ATR0598G206 Amborella trichopoda HOM05D007692 ORTHO05D009696 5.3e-07 58.5 101 34.7
CDE04G2134 Ceratophyllum demersum HOM05D007692 ORTHO05D009696 3.5e-06 55.8 108 33.3
Psat5g030520 Pisum sativum HOM05D007692 ORTHO05D009696 5.9e-06 55.1 94 39.4
Psat6g004480 Pisum sativum HOM05D007692 ORTHO05D009696 7.7e-06 54.7 47 55.3


User provided reference genes

Program Settings