Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g00570 Coffea canephora HOM05D000054 ORTHO05D008307 9.4e-32 140.2 67 100.0
Nitab4.5_0000209g0260 Nicotiana tabacum HOM05D000054 ORTHO05D008307 9.5e-24 113.6 64 76.6
Hma1.2p1_0243F.1_g100845 Hydrangea macrophylla HOM05D000054 ORTHO05D008307 1.6e-23 112.8 64 76.6
Hma1.2p1_0243F.1_g100850 Hydrangea macrophylla HOM05D000054 ORTHO05D008307 1.6e-23 112.8 64 76.6
Oeu060153.1 Olea europaea HOM05D000054 ORTHO05D008307 1.6e-23 112.8 64 78.1
Actinidia22339 Actinidia chinensis HOM05D000054 ORTHO05D008307 6.1e-23 110.9 65 76.9
DCAR_001528 Daucus carota HOM05D000054 ORTHO05D008307 1.0e-22 110.2 64 78.1
HanXRQChr13g0403021 Helianthus annuus HOM05D000054 ORTHO05D008307 1.0e-22 110.2 64 76.6
Dinv08638 Davidia involucrata HOM05D000054 ORTHO05D008307 1.8e-22 109.4 63 74.6
Migut.A00038 Erythranthe guttata HOM05D000054 ORTHO05D008307 3.0e-22 108.6 64 78.1
SalBow4G2072 Salvia bowleyana HOM05D000054 ORTHO05D008307 4.0e-22 108.2 63 79.4
ECA233G3661 Erigeron canadensis HOM05D000054 ORTHO05D008307 8.9e-22 107.1 63 77.8
Dinv18213 Davidia involucrata HOM05D000054 ORTHO05D008307 1.2e-21 106.7 63 74.6
Dinv30129 Davidia involucrata HOM05D000054 ORTHO05D008307 1.2e-21 106.7 63 74.6
Eucgr.C02767 Eucalyptus grandis HOM05D000054 ORTHO05D008307 1.2e-21 106.7 63 71.4
Lsat_1_v5_gn_6_21320 Lactuca sativa HOM05D000054 ORTHO05D008307 2.0e-21 105.9 64 75.0
QL02p021575 Quercus lobata HOM05D000054 ORTHO05D008307 2.0e-21 105.9 63 74.6
MSTRG.26009 Avicennia marina HOM05D000054 ORTHO05D008307 2.6e-21 105.5 63 77.8
Ciclev10007687m.g Citrus clementina HOM05D000054 ORTHO05D008307 3.4e-21 105.1 67 68.7
Haze_21512 Corylus avellana HOM05D000054 ORTHO05D008307 3.4e-21 105.1 64 71.9
CiPaw.08G010900 Carya illinoinensis HOM05D000054 ORTHO05D008307 5.7e-21 104.4 64 70.3
Gohir.A07G028500 Gossypium hirsutum HOM05D000054 ORTHO05D008307 5.7e-21 104.4 64 68.8
Gohir.D07G032600 Gossypium hirsutum HOM05D000054 ORTHO05D008307 5.7e-21 104.4 64 68.8
Gorai.001G034000 Gossypium raimondii HOM05D000054 ORTHO05D008307 5.7e-21 104.4 64 68.8
FvH4_2g28980 Fragaria vesca HOM05D000054 ORTHO05D008307 7.5e-21 104.0 64 70.3
FAN24G0168 Fragaria x ananassa HOM05D000054 ORTHO05D008307 7.5e-21 104.0 64 70.3
GSVIVG01035865001 Vitis vinifera HOM05D000054 ORTHO05D008307 1.3e-20 103.2 64 71.9
RcHm_v2.0_Chr6g0297831 Rosa chinensis HOM05D000054 ORTHO05D008307 2.2e-20 102.4 64 70.3
Potri.006G255100 Populus trichocarpa HOM05D000054 ORTHO05D008307 3.7e-20 101.7 63 71.4
TWI34G1577 Tripterygium wilfordii HOM05D000054 ORTHO05D008307 3.7e-20 101.7 63 71.4
Prupe.1G481600 Prunus persica HOM05D000054 ORTHO05D008307 4.9e-20 101.3 64 68.8
Thecc.09G024000 Theobroma cacao HOM05D000054 ORTHO05D008307 6.3e-20 100.9 64 67.2
Manes.16G122500 Manihot esculenta HOM05D000054 ORTHO05D008307 1.1e-19 100.1 63 71.4
CANSAT25G1113 Cannabis sativa HOM05D000054 ORTHO05D008307 1.4e-19 99.8 63 68.3
FAN20G1112 Fragaria x ananassa HOM05D000054 ORTHO05D008307 1.8e-19 99.4 64 68.8
Duzib168G0601 Durio zibethinus HOM05D000054 ORTHO05D008307 3.1e-19 98.6 64 65.6
Sabra06G0199400 Salix brachista HOM05D000054 ORTHO05D008307 7.0e-19 97.4 63 69.8
PGR044G1925 Punica granatum HOM05D000054 ORTHO05D008307 1.6e-18 96.3 66 68.2
MBI14_g32137_MAGBIO Magnolia biondii HOM05D000054 ORTHO05D008307 2.7e-18 95.5 67 65.7
Potri.018G026800 Populus trichocarpa HOM05D000054 ORTHO05D008307 7.8e-18 94.0 63 68.3
TAR383G0484 Trochodendron aralioides HOM05D000054 ORTHO05D008307 1.0e-17 93.6 63 69.8
Sabra18G0029400 Salix brachista HOM05D000117 ORTHO05D017707 1.3e-17 93.2 63 63.5
TAR383G0363 Trochodendron aralioides HOM05D000054 ORTHO05D008307 3.8e-17 91.7 63 68.3
SGA_v2.0_scaffold20G09123 Striga asiatica HOM05D000054 ORTHO05D008307 3.6e-15 85.1 76 60.5
GSVIVG01029720001 Vitis vinifera HOM05D000054 ORTHO05D000286 6.0e-10 67.8 66 51.5
GSVIVG01029724001 Vitis vinifera HOM05D000054 ORTHO05D010039 6.0e-10 67.8 66 51.5
Actinidia07369 Actinidia chinensis HOM05D000054 ORTHO05D000286 7.8e-10 67.4 69 50.7
SEGI_08831 Sequoiadendron giganteum HOM05D000054 ORTHO05D010039 2.3e-09 65.9 62 48.4
SEGI_13984 Sequoiadendron giganteum HOM05D000054 ORTHO05D010039 2.3e-09 65.9 62 48.4
Rhsim06G0240900 Rhododendron simsii HOM05D000054 ORTHO05D000286 5.0e-09 64.7 49 57.1
Cc00_g21100 Coffea canephora HOM05D000054 ORTHO05D000171 8.6e-09 63.9 52 59.6
CSS0049836 Camellia sinensis var. sinensis HOM05D000054 ORTHO05D000171 1.1e-08 63.5 49 55.1
Rhsim10G0000600 Rhododendron simsii HOM05D000054 ORTHO05D010039 1.1e-08 63.5 69 47.8
CSS0028649 Camellia sinensis var. sinensis HOM05D000054 ORTHO05D000286 1.5e-08 63.2 49 53.1
DCAR_019923 Daucus carota HOM05D000054 ORTHO05D000286 1.5e-08 63.2 51 54.9
PGR031G3107 Punica granatum HOM05D000054 ORTHO05D000286 1.5e-08 63.2 70 47.1
Rhsim09G0135300 Rhododendron simsii HOM05D000054 ORTHO05D000286 1.5e-08 63.2 49 57.1
RcHm_v2.0_Chr5g0025891 Rosa chinensis HOM05D000054 ORTHO05D000286 2.5e-08 62.4 68 50.0
vmacro11709 Vaccinium macrocarpon HOM05D000054 ORTHO05D000286 2.5e-08 62.4 49 55.1
FvH4_3g15410 Fragaria vesca HOM05D000054 ORTHO05D000171 3.3e-08 62.0 66 50.0
FvH4_3g15440 Fragaria vesca HOM05D000054 ORTHO05D000286 3.3e-08 62.0 66 50.0
RcHm_v2.0_Chr5g0025931 Rosa chinensis HOM05D000054 ORTHO05D000286 3.3e-08 62.0 52 53.8
Solyc07g066550.4 Solanum lycopersicum HOM05D000054 ORTHO05D000286 3.3e-08 62.0 52 59.6
Sopen07g034710 Solanum pennellii HOM05D000054 ORTHO05D000171 3.3e-08 62.0 52 59.6
CANSAT80G0337 Cannabis sativa HOM05D000054 ORTHO05D000286 4.3e-08 61.6 52 53.8
CAN.G943.47 Capsicum annuum HOM05D000054 ORTHO05D000286 4.3e-08 61.6 52 57.7
Ciclev10007054m.g Citrus clementina HOM05D000054 ORTHO05D000286 5.6e-08 61.2 71 47.9
RcHm_v2.0_Chr2g0114861 Rosa chinensis HOM05D000054 ORTHO05D010039 5.6e-08 61.2 70 50.0
vmacro11708 Vaccinium macrocarpon HOM05D000054 ORTHO05D000286 7.3e-08 60.8 49 55.1
Zm00001eb430990 Zea mays HOM05D000054 ORTHO05D000286 1.2e-07 60.1 72 48.6
Lj1C909T10 Lonicera japonica HOM05D000054 ORTHO05D000286 1.6e-07 59.7 69 46.4
Lalb_Chr03g0031681 Lupinus albus HOM05D000054 ORTHO05D000286 1.6e-07 59.7 69 47.8
GSVIVG01029718001 Vitis vinifera HOM05D000054 ORTHO05D000171 1.6e-07 59.7 70 48.6
Lj3g0026277 Lotus japonicus HOM05D000054 ORTHO05D000171 2.1e-07 59.3 54 53.7
Rhsim06G0236400 Rhododendron simsii HOM05D000054 ORTHO05D000286 2.8e-07 58.9 49 53.1
Aa31LG10G120 Aethionema arabicum HOM05D000054 ORTHO05D000286 3.6e-07 58.5 54 51.9
Peaxi162Scf00452g00624 Petunia axillaris HOM05D000054 ORTHO05D000286 4.7e-07 58.2 52 53.8
vmacro05546 Vaccinium macrocarpon HOM05D000054 ORTHO05D010039 4.7e-07 58.2 63 44.4
FAN16G3517 Fragaria x ananassa HOM05D000054 ORTHO05D000286 6.2e-07 57.8 48 60.4
FAN21G2765 Fragaria x ananassa HOM05D000054 ORTHO05D000286 6.2e-07 57.8 66 48.5
Rhsim06G0143000 Rhododendron simsii HOM05D000054 ORTHO05D000286 6.2e-07 57.8 49 53.1
VMungo1127G0115 Vigna mungo HOM05D000054 ORTHO05D000286 6.2e-07 57.8 67 44.8
Eucgr.F04300 Eucalyptus grandis HOM05D000054 ORTHO05D010039 8.0e-07 57.4 54 50.0
Gohir.A10G048300 Gossypium hirsutum HOM05D000054 ORTHO05D000286 8.0e-07 57.4 70 44.3
CANSAT80G2639 Cannabis sativa HOM05D000054 ORTHO05D000286 1.1e-06 57.0 52 50.0
Lsat_1_v5_gn_7_111801 Lactuca sativa HOM05D000054 ORTHO05D000286 1.1e-06 57.0 70 42.9
Rhsim06G0143400 Rhododendron simsii HOM05D000054 ORTHO05D000286 1.1e-06 57.0 67 44.8
HPP92_005931 Vanilla planifolia HOM05D000054 ORTHO05D000286 1.1e-06 57.0 64 43.8
AL1G64410 Arabidopsis lyrata HOM05D000054 ORTHO05D000286 1.4e-06 56.6 53 50.9
BcaB04g16915 Brassica carinata HOM05D000054 ORTHO05D000286 1.4e-06 56.6 61 47.5
Dinv00486 Davidia involucrata HOM05D000054 ORTHO05D010039 1.4e-06 56.6 52 50.0
Gohir.D10G049000 Gossypium hirsutum HOM05D000054 ORTHO05D000286 1.4e-06 56.6 70 44.3
HanXRQChr11g0335781 Helianthus annuus HOM05D000054 ORTHO05D000286 1.4e-06 56.6 69 43.5
SGA_v2.0_scaffold49G18181 Striga asiatica HOM05D000054 ORTHO05D000286 1.4e-06 56.6 52 51.9
BraA07t31239Z Brassica rapa HOM05D000054 ORTHO05D000286 1.8e-06 56.2 54 48.1
FvH4_1g21070 Fragaria vesca HOM05D000054 ORTHO05D000286 1.8e-06 56.2 70 42.9
FAN11G0840 Fragaria x ananassa HOM05D000054 ORTHO05D000286 1.8e-06 56.2 66 48.5
FAN26G2319 Fragaria x ananassa HOM05D000054 ORTHO05D000286 1.8e-06 56.2 70 42.9
Prupe.4G136900 Prunus persica HOM05D000054 ORTHO05D000171 1.8e-06 56.2 70 42.9
Rhsim06G0240700 Rhododendron simsii HOM05D000054 ORTHO05D000286 1.8e-06 56.2 49 51.0
CARHR045880 Cardamine hirsuta HOM05D000054 ORTHO05D000286 2.3e-06 55.8 54 50.0
ECA236G2231 Erigeron canadensis HOM05D000054 ORTHO05D000286 2.3e-06 55.8 54 50.0
Thhalv10012222m.g Eutrema salsugineum HOM05D000054 ORTHO05D000286 2.3e-06 55.8 54 51.9
FvH4_3g15430 Fragaria vesca HOM05D000054 ORTHO05D000286 2.3e-06 55.8 48 58.3
QL04p077429 Quercus lobata HOM05D000054 ORTHO05D000171 2.3e-06 55.8 70 41.4
QL04p079123 Quercus lobata HOM05D000054 ORTHO05D000171 2.3e-06 55.8 52 53.8
BcaC08g46474 Brassica carinata HOM05D000054 ORTHO05D000286 3.1e-06 55.5 54 48.1
A07p36710 Brassica napus HOM05D000054 ORTHO05D000286 3.1e-06 55.5 54 48.1
BolC3t21639H Brassica oleracea HOM05D000054 ORTHO05D000286 3.1e-06 55.5 62 45.2
BraA08t32065Z Brassica rapa HOM05D000054 ORTHO05D000286 3.1e-06 55.5 62 45.2
DCAR_019924 Daucus carota HOM05D000054 ORTHO05D000171 3.1e-06 55.5 56 46.4
Os08g0203100 Oryza sativa ssp. japonica HOM05D000054 ORTHO05D010039 3.1e-06 55.5 71 46.5
QL04p079309 Quercus lobata HOM05D000054 ORTHO05D000286 3.1e-06 55.5 70 42.9
Sp1g41780 Schrenkiella parvula HOM05D000054 ORTHO05D000286 3.1e-06 55.5 54 50.0
CAN.G943.46 Capsicum annuum HOM05D000054 ORTHO05D000286 4.0e-06 55.1 52 53.8
CDE09G0568 Ceratophyllum demersum HOM05D000054 ORTHO05D000171 4.0e-06 55.1 73 37.0
FAN25G2179 Fragaria x ananassa HOM05D000054 ORTHO05D000171 4.0e-06 55.1 66 47.0
Lsat_1_v5_gn_7_111881 Lactuca sativa HOM05D000054 ORTHO05D000286 4.0e-06 55.1 52 50.0
Oeu001956.4 Olea europaea HOM05D000054 ORTHO05D000286 4.0e-06 55.1 57 49.1
BcaC03g14910 Brassica carinata HOM05D000054 ORTHO05D010039 5.2e-06 54.7 52 50.0
A02p14760 Brassica napus HOM05D000054 ORTHO05D000286 5.2e-06 54.7 52 50.0
A08p00060 Brassica napus HOM05D000054 ORTHO05D000286 5.2e-06 54.7 54 50.0
C02p23880 Brassica napus HOM05D000054 ORTHO05D000286 5.2e-06 54.7 52 50.0
C03p93420 Brassica napus HOM05D000054 ORTHO05D000286 5.2e-06 54.7 54 50.0
BolC2t08523H Brassica oleracea HOM05D000054 ORTHO05D000286 5.2e-06 54.7 52 50.0
BolC3t21640H Brassica oleracea HOM05D000054 ORTHO05D000286 5.2e-06 54.7 54 50.0
BraA02t06543Z Brassica rapa HOM05D000054 ORTHO05D000286 5.2e-06 54.7 52 50.0
BraA08t32063Z Brassica rapa HOM05D000054 ORTHO05D000286 5.2e-06 54.7 54 50.0
AL1G64390 Arabidopsis lyrata HOM05D000054 ORTHO05D000286 6.8e-06 54.3 54 48.1
BcaC03g16568 Brassica carinata HOM05D000054 ORTHO05D000286 6.8e-06 54.3 54 50.0
C02p43820 Brassica napus HOM05D000054 ORTHO05D010039 6.8e-06 54.3 54 50.0
C02p54920 Brassica napus HOM05D000054 ORTHO05D010039 6.8e-06 54.3 54 50.0
BolC2t10430H Brassica oleracea HOM05D000054 ORTHO05D000286 6.8e-06 54.3 54 50.0
CANSAT80G2409 Cannabis sativa HOM05D000054 ORTHO05D000171 6.8e-06 54.3 55 43.6
Hma1.2p1_0151F.1_g067450 Hydrangea macrophylla HOM05D000054 ORTHO05D010039 6.8e-06 54.3 50 46.0
Potri.007G067900 Populus trichocarpa HOM05D000054 ORTHO05D000286 6.8e-06 54.3 71 43.7
Sed0005947 Sechium edule HOM05D000054 ORTHO05D000286 6.8e-06 54.3 49 53.1
BraA09t37634Z Brassica rapa HOM05D000054 ORTHO05D010039 8.9e-06 53.9 52 51.9
CANSAT80G2791 Cannabis sativa HOM05D000054 ORTHO05D000286 8.9e-06 53.9 55 43.6
Thhalv10018064m.g Eutrema salsugineum HOM05D000054 ORTHO05D000286 8.9e-06 53.9 54 48.1
Os08g0203400 Oryza sativa ssp. japonica HOM05D000054 ORTHO05D000171 8.9e-06 53.9 52 51.9


User provided reference genes

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