Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g00410 Coffea canephora HOM05D005054 ORTHO05D005948 3.0e-109 398.7 221 100.0
Gorai.001G035100 Gossypium raimondii HOM05D005054 ORTHO05D005948 9.7e-84 313.9 197 80.7
GSVIVG01035953001 Vitis vinifera HOM05D005054 ORTHO05D005948 1.3e-83 313.5 202 79.2
TWI32G1290 Tripterygium wilfordii HOM05D005054 ORTHO05D005948 3.7e-83 312.0 190 82.6
CAN.G9.14 Capsicum annuum HOM05D005054 ORTHO05D005948 4.8e-83 311.6 202 77.7
Thecc.09G021500 Theobroma cacao HOM05D005054 ORTHO05D005948 6.3e-83 311.2 193 81.9
Gohir.A07G029500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 8.2e-83 310.8 197 80.2
Sopen08g012360 Solanum pennellii HOM05D005054 ORTHO05D005948 1.1e-82 310.5 198 80.3
Duzib187G0432 Durio zibethinus HOM05D005054 ORTHO05D005948 3.1e-82 308.9 200 79.0
HanXRQChr02g0050341 Helianthus annuus HOM05D005054 ORTHO05D005948 5.3e-82 308.1 193 78.2
Gohir.D07G033500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 1.2e-81 307.0 197 79.2
Dinv18198 Davidia involucrata HOM05D005054 ORTHO05D005948 1.5e-81 306.6 203 78.8
Actinidia14591 Actinidia chinensis HOM05D005054 ORTHO05D005948 2.0e-81 306.2 196 78.6
Nitab4.5_0003389g0010 Nicotiana tabacum HOM05D005054 ORTHO05D005948 1.7e-80 303.1 217 73.3
Solyc08g041980.3 Solanum lycopersicum HOM05D005054 ORTHO05D005948 1.7e-80 303.1 186 82.3
Aqoxy7G03608 Aquilegia oxysepala HOM05D005054 ORTHO05D005948 3.8e-80 302.0 185 77.8
Manes.03G012900 Manihot esculenta HOM05D005054 ORTHO05D005948 3.8e-80 302.0 199 77.9
HanXRQChr13g0403241 Helianthus annuus HOM05D005054 ORTHO05D005948 1.9e-79 299.7 189 77.2
Manes.16G124300 Manihot esculenta HOM05D005054 ORTHO05D005948 3.2e-79 298.9 196 77.6
Potri.018G024600 Populus trichocarpa HOM05D005054 ORTHO05D005948 5.5e-79 298.1 202 77.2
CsaV3_3G046210 Cucumis sativus L. HOM05D005054 ORTHO05D005948 9.4e-79 297.4 198 76.3
ECA233G2586 Erigeron canadensis HOM05D005054 ORTHO05D005948 9.4e-79 297.4 198 76.3
Lalb_Chr08g0244231 Lupinus albus HOM05D005054 ORTHO05D005948 9.4e-79 297.4 202 77.2
Lsat_1_v5_gn_6_20280 Lactuca sativa HOM05D005054 ORTHO05D005948 1.2e-78 297.0 193 75.1
Medtr3g106570 Medicago truncatula HOM05D005054 ORTHO05D005948 1.2e-78 297.0 198 76.8
TPR.G3145 Trifolium pratense HOM05D005054 ORTHO05D005948 1.2e-78 297.0 196 77.0
Potri.006G257100 Populus trichocarpa HOM05D005054 ORTHO05D005948 1.6e-78 296.6 203 77.3
MELO3C003718.2 Cucumis melo HOM05D005054 ORTHO05D005948 2.1e-78 296.2 198 75.8
Nn2g12158 Nelumbo nucifera HOM05D005054 ORTHO05D005948 2.1e-78 296.2 188 75.5
Sed0004415 Sechium edule HOM05D005054 ORTHO05D005948 2.1e-78 296.2 199 73.9
COL.COLO4_18886 Corchorus olitorius HOM05D002641 ORTHO05D001537 2.7e-78 295.8 178 82.6
Lalb_Chr23g0268431 Lupinus albus HOM05D005054 ORTHO05D005948 2.7e-78 295.8 202 74.8
CANSAT78G0154 Cannabis sativa HOM05D005054 ORTHO05D005948 4.6e-78 295.0 196 75.0
Gohir.D06G101400 Gossypium hirsutum HOM05D005054 ORTHO05D005948 4.6e-78 295.0 197 76.1
Prupe.1G483600 Prunus persica HOM05D005054 ORTHO05D005948 4.6e-78 295.0 197 76.6
Ca_15755_v3 Cicer arietinum L. HOM05D005054 ORTHO05D005948 7.9e-78 294.3 195 76.4
Sed0027504 Sechium edule HOM05D005054 ORTHO05D005948 1.0e-77 293.9 190 74.7
CiPaw.08G009700 Carya illinoinensis HOM05D005054 ORTHO05D005948 1.4e-77 293.5 197 76.6
Glyma.06G066400 Glycine max HOM05D005054 ORTHO05D005948 2.3e-77 292.7 198 74.7
Gohir.A06G099200 Gossypium hirsutum HOM05D005054 ORTHO05D005948 2.3e-77 292.7 196 76.0
Gorai.010G116300 Gossypium raimondii HOM05D005054 ORTHO05D005948 2.3e-77 292.7 197 75.6
Phvul.009G091300 Phaseolus vulgaris HOM05D005054 ORTHO05D005948 3.0e-77 292.4 199 74.9
VMungo1309G0253 Vigna mungo HOM05D005054 ORTHO05D005948 3.9e-77 292.0 199 75.4
Glyma.04G065200 Glycine max HOM05D005054 ORTHO05D005948 6.7e-77 291.2 198 74.7
Sc06g0000550 Simmondsia chinensis HOM05D005054 ORTHO05D005948 8.8e-77 290.8 201 73.1
EL10Ac2g04185 Beta vulgaris HOM05D005054 ORTHO05D005948 1.1e-76 290.4 197 73.6
ClCG05G016710 Citrullus lanatus HOM05D005054 ORTHO05D005948 1.1e-76 290.4 190 76.8
PGR083G2649 Punica granatum HOM05D005054 ORTHO05D005948 1.1e-76 290.4 201 76.6
CSS0023128 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 2.6e-76 289.3 197 75.1
CSS0037696 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 2.6e-76 289.3 197 75.1
Lj1g0015588 Lotus japonicus HOM05D005054 ORTHO05D005948 2.6e-76 289.3 199 74.4
CiPaw.07G225400 Carya illinoinensis HOM05D005054 ORTHO05D005948 3.3e-76 288.9 195 75.4
TAR625G0984 Trochodendron aralioides HOM05D005054 ORTHO05D005948 3.3e-76 288.9 197 73.6
CSS0023723 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 5.7e-76 288.1 194 75.8
CSS0024153 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 5.7e-76 288.1 194 75.8
Psat5g031480 Pisum sativum HOM05D005054 ORTHO05D005948 5.7e-76 288.1 177 79.1
TAR626G0177 Trochodendron aralioides HOM05D005054 ORTHO05D005948 5.7e-76 288.1 200 74.0
Eucgr.C02743 Eucalyptus grandis HOM05D005054 ORTHO05D005948 7.4e-76 287.7 186 78.0
Actinidia22328 Actinidia chinensis HOM05D005054 ORTHO05D005948 9.7e-76 287.3 171 82.5
arahy.Tifrunner.gnm1.ann1.NJ6IKW Arachis hypogaea HOM05D005054 ORTHO05D005948 9.7e-76 287.3 206 72.8
MD08G1157200 Malus domestica HOM05D005054 ORTHO05D005948 1.3e-75 287.0 194 75.8
Haze_21489 Corylus avellana HOM05D005054 ORTHO05D005948 2.8e-75 285.8 190 75.8
MD15G1128300 Malus domestica HOM05D005054 ORTHO05D005948 2.8e-75 285.8 198 74.2
Migut.A00022 Erythranthe guttata HOM05D005054 ORTHO05D005948 4.8e-75 285.0 203 72.4
MSTRG.26017 Avicennia marina HOM05D005054 ORTHO05D005948 6.3e-75 284.6 199 72.9
Ciclev10009464m.g Citrus clementina HOM05D005054 ORTHO05D005948 5.3e-74 281.6 191 74.9
Cpa.g.sc187.3 Carica papaya HOM05D005054 ORTHO05D005948 6.9e-74 281.2 198 74.7
Hund25870 Selenicereus undatus HOM05D005054 ORTHO05D005948 1.2e-73 280.4 193 74.1
THA.LOC104803846 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 1.2e-73 280.4 193 74.6
RcHm_v2.0_Chr6g0297531 Rosa chinensis HOM05D005054 ORTHO05D005948 7.7e-73 277.7 199 73.4
Sabra18G0027000 Salix brachista HOM05D002641 ORTHO05D001537 7.7e-73 277.7 210 72.4
Thhalv10026275m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 1.3e-72 276.9 190 72.1
unitig_0.g694 Utricularia gibba HOM05D005054 ORTHO05D005948 2.2e-72 276.2 199 69.8
HPP92_000468 Vanilla planifolia HOM05D005054 ORTHO05D005948 2.2e-72 276.2 185 71.4
ATR0767G140 Amborella trichopoda HOM05D005054 ORTHO05D005948 5.0e-72 275.0 200 68.5
THA.LOC104803647 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 1.9e-71 273.1 195 72.8
vmacro11190 Vaccinium macrocarpon HOM05D005054 ORTHO05D005948 1.9e-71 273.1 283 54.8
PSO170G1976 Papaver somniferum HOM05D005054 ORTHO05D005948 5.5e-71 271.6 186 72.6
Carub.0004s0494 Capsella rubella HOM05D005054 ORTHO05D005948 9.4e-71 270.8 203 70.0
Lj8A723T59 Lonicera japonica HOM05D005054 ORTHO05D005948 1.2e-70 270.4 160 83.1
QL02p021123 Quercus lobata HOM05D005054 ORTHO05D005948 1.2e-70 270.4 201 71.1
Carub.0007s0843 Capsella rubella HOM05D005054 ORTHO05D005948 1.6e-70 270.0 194 70.6
PSO017G3131 Papaver somniferum HOM05D005054 ORTHO05D005948 3.6e-70 268.9 182 72.5
CARHR116210 Cardamine hirsuta HOM05D005054 ORTHO05D005948 4.7e-70 268.5 191 71.7
AL4G16690 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 6.1e-70 268.1 203 69.5
Actinidia33783 Actinidia chinensis HOM05D005054 ORTHO05D005948 1.0e-69 267.3 157 84.1
AT2G25310 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 1.4e-69 266.9 202 69.8
Sp4g04450 Schrenkiella parvula HOM05D005054 ORTHO05D005948 1.4e-69 266.9 195 71.3
BcaB08g35175 Brassica carinata HOM05D005054 ORTHO05D005948 1.8e-69 266.5 198 71.2
Zm00001eb275230 Zea mays HOM05D005054 ORTHO05D005948 1.8e-69 266.5 198 69.2
SalBow4G2693 Salvia bowleyana HOM05D005054 ORTHO05D005948 3.0e-69 265.8 200 68.0
Sp7g29920 Schrenkiella parvula HOM05D005054 ORTHO05D005948 3.0e-69 265.8 183 69.9
AT4G32130 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 3.9e-69 265.4 183 71.6
A09p55700 Brassica napus HOM05D005054 ORTHO05D005948 3.9e-69 265.4 201 69.7
BraA09t40971Z Brassica rapa HOM05D005054 ORTHO05D005948 3.9e-69 265.4 201 69.7
Thhalv10000323m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 3.9e-69 265.4 195 70.8
Os06g0644100 Oryza sativa ssp. japonica HOM05D005054 ORTHO05D005948 3.9e-69 265.4 181 71.8
FvH4_2g28770 Fragaria vesca HOM05D005054 ORTHO05D005948 1.1e-68 263.8 200 68.5
FAN20G0036 Fragaria x ananassa HOM05D005054 ORTHO05D005948 1.1e-68 263.8 197 70.1
FAN24G3113 Fragaria x ananassa HOM05D005054 ORTHO05D005948 2.6e-68 262.7 203 69.0
Sopen06g024410 Solanum pennellii HOM05D005054 ORTHO05D005948 2.6e-68 262.7 193 73.6
BcaC07g40871 Brassica carinata HOM05D005054 ORTHO05D005948 5.7e-68 261.5 201 68.7
CARHR240040 Cardamine hirsuta HOM05D005054 ORTHO05D005948 7.4e-68 261.2 171 74.3
FAN15G2263 Fragaria x ananassa HOM05D002641 ORTHO05D005948 9.7e-68 260.8 197 69.0
AL7G19730 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 1.3e-67 260.4 192 69.8
BcaNung03140 Brassica carinata HOM05D005054 ORTHO05D005948 1.3e-67 260.4 183 68.9
FAN27G2872 Fragaria x ananassa HOM05D005054 ORTHO05D005948 1.3e-67 260.4 197 69.5
BcaC09g52000 Brassica carinata HOM05D005054 ORTHO05D005948 1.7e-67 260.0 194 67.0
BolC1t00678H Brassica oleracea HOM05D005054 ORTHO05D005948 8.2e-67 257.7 197 65.5
CAN.G1475.8 Capsicum annuum HOM05D005054 ORTHO05D005948 1.1e-66 257.3 184 74.5
AUR62012426 Chenopodium quinoa HOM05D005054 ORTHO05D005948 1.1e-66 257.3 197 69.0
Solyc06g065930.4 Solanum lycopersicum HOM05D005054 ORTHO05D005948 1.1e-66 257.3 193 72.0
BolC8t51440H Brassica oleracea HOM05D005054 ORTHO05D005948 5.3e-66 255.0 207 66.7
BraA01t00585Z Brassica rapa HOM05D005054 ORTHO05D005948 9.1e-66 254.2 169 72.2
C08p38700 Brassica napus HOM05D005054 ORTHO05D005948 1.2e-65 253.8 207 66.2
AUR62031549 Chenopodium quinoa HOM05D005054 ORTHO05D005948 2.2e-64 249.6 153 81.7
Rhsim02G0203400 Rhododendron simsii HOM05D005054 ORTHO05D005948 2.9e-64 249.2 204 65.2
Nitab4.5_0000109g0420 Nicotiana tabacum HOM05D005054 ORTHO05D005948 4.2e-63 245.4 168 75.6
Zm00001eb387020 Zea mays HOM05D005054 ORTHO05D005948 5.5e-63 245.0 170 71.8
CDE12G0076 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 1.1e-60 237.3 195 63.6
Atru.chr7.2466 Acer truncatum HOM05D002641 ORTHO05D001537 3.5e-57 225.7 148 75.7
CDE01G0036 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 4.5e-57 225.3 197 61.9
PGSC0003DMG400029900 Solanum tuberosum HOM05D005054 ORTHO05D005948 8.0e-54 214.5 128 83.6
Mapoly0003s0100 Marchantia polymorpha HOM05D005054 ORTHO05D005948 1.4e-53 213.8 194 56.2
MBI14_g36925_MAGBIO Magnolia biondii HOM05D005054 ORTHO05D005948 3.7e-51 205.7 120 84.2
Nitab4.5_0005785g0040 Nicotiana tabacum HOM05D005054 ORTHO05D005948 6.3e-51 204.9 127 80.3
arahy.Tifrunner.gnm1.ann1.49IL45 Arachis hypogaea HOM05D005054 ORTHO05D005948 5.4e-50 201.8 206 57.3
SGA_v2.0_scaffold64G21960 Striga asiatica HOM05D005054 ORTHO05D005948 1.2e-49 200.7 202 56.4
Nitab4.5_0000857g0140 Nicotiana tabacum HOM05D005054 ORTHO05D005948 3.8e-48 195.7 156 67.9
Oeu024982.1 Olea europaea HOM05D005054 ORTHO05D005948 7.2e-47 191.4 184 61.4
AagrBONN_evm.TU.Sc2ySwM_362.161 Anthoceros agrestis HOM05D005054 ORTHO05D005948 9.5e-47 191.0 170 57.1
Zm00001eb149990 Zea mays HOM05D005054 ORTHO05D005948 8.0e-46 188.0 120 75.0
SMO354G0008 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 1.2e-44 184.1 151 58.9
Pp3c25_10780 Physcomitrium patens HOM05D005054 ORTHO05D005948 2.0e-44 183.3 183 51.9
Actinidia14094 Actinidia chinensis HOM05D005054 ORTHO05D005948 5.7e-44 181.8 191 54.5
DCAR_001545 Daucus carota HOM05D005054 ORTHO05D005948 2.2e-43 179.9 103 84.5
arahy.Tifrunner.gnm1.ann1.M1LVA5 Arachis hypogaea HOM05D005054 ORTHO05D005948 6.6e-40 168.3 91 85.7
Peaxi162Scf00136g00153 Petunia axillaris HOM05D005054 ORTHO05D005948 1.9e-39 166.8 107 78.5
HPP92_000478 Vanilla planifolia HOM05D005054 ORTHO05D005948 4.3e-39 165.6 159 54.1
SMO364G0469 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 1.7e-35 153.7 150 50.7
CBR_g24053 Chara braunii HOM05D005054 ORTHO05D005948 2.0e-33 146.7 161 47.8
Zm00001eb279560 Zea mays HOM05D005054 ORTHO05D005948 1.3e-32 144.1 106 69.8
CDE01G0528 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 3.1e-29 132.9 172 48.3
A01p06180 Brassica napus HOM05D000316 ORTHO05D001978 3.1e-21 106.3 70 68.6
Nitab4.5_0006784g0020 Nicotiana tabacum HOM05D005054 ORTHO05D005948 6.8e-21 105.1 213 39.0
C01p06810 Brassica napus HOM05D000316 ORTHO05D001978 1.2e-20 104.4 70 67.1
Zm00001eb412760 Zea mays HOM05D002563 ORTHO05D005948 6.4e-19 98.6 54 79.6
Zm00001eb260640 Zea mays HOM05D002563 ORTHO05D005948 1.1e-18 97.8 59 76.3
FvH4_6g38550 Fragaria vesca HOM05D005054 ORTHO05D005948 9.2e-18 94.7 98 56.1
MCO11G876 Micromonas commoda HOM05D005054 ORTHO05D005948 4.6e-17 92.4 148 38.5
Cre07.g340650 Chlamydomonas reinhardtii HOM05D005054 ORTHO05D005948 1.5e-15 87.4 202 31.2
Aa31LG2G17830 Aethionema arabicum HOM05D005054 ORTHO05D005948 7.3e-15 85.1 78 55.1
EL10Ac1g01779 Beta vulgaris HOM05D005054 ORTHO05D005948 2.9e-11 73.2 40 87.5
TPR.G18056 Trifolium pratense HOM05D005054 ORTHO05D005948 1.4e-10 70.9 47 70.2
Zm00001eb260650 Zea mays HOM05D005054 ORTHO05D005948 7.1e-10 68.6 57 64.9


User provided reference genes

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