Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g00340 Coffea canephora HOM05D005419 ORTHO05D007365 8.4e-168 593.6 292 100.0
SalBow4G1212 Salvia bowleyana HOM05D005419 ORTHO05D007365 1.7e-152 542.7 292 88.4
QL02p020871 Quercus lobata HOM05D005419 ORTHO05D007365 2.2e-152 542.3 291 89.0
Peaxi162Scf00935g00015 Petunia axillaris HOM05D005419 ORTHO05D007365 4.2e-151 538.1 292 87.3
Hma1.2p1_0974F.1_g243070 Hydrangea macrophylla HOM05D005419 ORTHO05D007365 2.7e-150 535.4 292 87.7
Dinv15871 Davidia involucrata HOM05D005419 ORTHO05D007365 1.0e-149 533.5 292 86.6
Cfa013117 Carpinus fangiana HOM05D005419 ORTHO05D007365 1.3e-149 533.1 292 86.6
Manes.16G125000 Manihot esculenta HOM05D005419 ORTHO05D007365 1.3e-149 533.1 292 86.6
GSVIVG01035939001 Vitis vinifera HOM05D005419 ORTHO05D007365 1.7e-149 532.7 292 87.7
Gohir.D05G058700 Gossypium hirsutum HOM05D005419 ORTHO05D007365 8.7e-149 530.4 292 87.3
Gorai.009G059800 Gossypium raimondii HOM05D005419 ORTHO05D007365 8.7e-149 530.4 292 87.3
Gorai.010G116600 Gossypium raimondii HOM05D005419 ORTHO05D007365 1.1e-148 530.0 292 87.3
arahy.Tifrunner.gnm1.ann1.2DG9CD Arachis hypogaea HOM05D005419 ORTHO05D007365 2.5e-148 528.9 287 87.8
arahy.Tifrunner.gnm1.ann1.X3TF0E Arachis hypogaea HOM05D005419 ORTHO05D007365 2.5e-148 528.9 287 87.8
Glyma.14G113800 Glycine max HOM05D005419 ORTHO05D007365 2.5e-148 528.9 288 86.1
Gohir.A06G099500 Gossypium hirsutum HOM05D005419 ORTHO05D007365 2.5e-148 528.9 292 87.0
Nitab4.5_0014723g0010 Nicotiana tabacum HOM05D005419 ORTHO05D007365 2.5e-148 528.9 292 86.6
TWI34G1484 Tripterygium wilfordii HOM05D005419 ORTHO05D007365 2.5e-148 528.9 292 85.6
ECA248G3461 Erigeron canadensis HOM05D005419 ORTHO05D007365 3.3e-148 528.5 290 84.5
Eucgr.K02838 Eucalyptus grandis HOM05D005419 ORTHO05D007365 3.3e-148 528.5 292 85.6
Phvul.001G049700 Phaseolus vulgaris HOM05D005419 ORTHO05D007365 3.3e-148 528.5 288 86.5
CSS0019044 Camellia sinensis var. sinensis HOM05D005419 ORTHO05D007365 4.3e-148 528.1 292 87.0
MSTRG.26021 Avicennia marina HOM05D005419 ORTHO05D007365 5.6e-148 527.7 289 86.5
Ciclev10009082m.g Citrus clementina HOM05D005419 ORTHO05D007365 5.6e-148 527.7 292 86.3
Duzib150G0083 Durio zibethinus HOM05D005419 ORTHO05D007365 5.6e-148 527.7 292 86.6
MD15G1129200 Malus domestica HOM05D005419 ORTHO05D007365 5.6e-148 527.7 292 85.3
PGR119G2552 Punica granatum HOM05D005419 ORTHO05D007365 5.6e-148 527.7 292 85.6
EL10Ac2g04167 Beta vulgaris HOM05D005419 ORTHO05D007365 7.4e-148 527.3 292 86.6
HanXRQChr13g0387991 Helianthus annuus HOM05D005419 ORTHO05D007365 7.4e-148 527.3 290 84.8
Atru.chr7.2482 Acer truncatum HOM05D005419 ORTHO05D007365 1.6e-147 526.2 290 85.9
Gohir.D06G101700 Gossypium hirsutum HOM05D005419 ORTHO05D007365 1.6e-147 526.2 292 86.6
VMungo0647G0032 Vigna mungo HOM05D005419 ORTHO05D007365 2.8e-147 525.4 288 85.8
TAR383G1021 Trochodendron aralioides HOM05D005419 ORTHO05D007365 8.1e-147 523.9 290 85.9
CiPaw.07G226000 Carya illinoinensis HOM05D005419 ORTHO05D007365 1.1e-146 523.5 292 85.6
Sed0010362 Sechium edule HOM05D005419 ORTHO05D007365 1.8e-146 522.7 292 84.9
Sopen08g010000 Solanum pennellii HOM05D005419 ORTHO05D007365 5.3e-146 521.2 292 85.6
CsaV3_2G032220 Cucumis sativus L. HOM05D005419 ORTHO05D007365 6.9e-146 520.8 292 85.3
Migut.A00016 Erythranthe guttata HOM05D005419 ORTHO05D007365 6.9e-146 520.8 292 84.9
RcHm_v2.0_Chr6g0297381 Rosa chinensis HOM05D005419 ORTHO05D007365 9.0e-146 520.4 292 84.2
Medtr1g012830 Medicago truncatula HOM05D005419 ORTHO05D007365 1.2e-145 520.0 288 84.7
Actinidia14096 Actinidia chinensis HOM05D005419 ORTHO05D007365 2.0e-145 519.2 280 87.1
Solyc08g029110.3 Solanum lycopersicum HOM05D005419 ORTHO05D007365 2.6e-145 518.8 292 85.3
Thecc.09G020800 Theobroma cacao HOM05D005419 ORTHO05D007365 2.6e-145 518.8 294 85.7
MD08G1152600 Malus domestica HOM05D005419 ORTHO05D007365 3.4e-145 518.5 292 84.2
Lj8A726G39 Lonicera japonica HOM05D005419 ORTHO05D007365 4.5e-145 518.1 290 84.8
AUR62031558 Chenopodium quinoa HOM05D005419 ORTHO05D007365 5.8e-145 517.7 290 85.9
DCAR_003104 Daucus carota HOM05D005419 ORTHO05D007365 7.6e-145 517.3 292 84.2
FvH4_2g28610 Fragaria vesca HOM05D005419 ORTHO05D007365 7.6e-145 517.3 292 84.9
FAN24G2053 Fragaria x ananassa HOM05D005419 ORTHO05D007365 7.6e-145 517.3 292 84.9
Lalb_Chr23g0268401 Lupinus albus HOM05D005419 ORTHO05D007365 1.3e-144 516.5 290 84.8
AUR62012434 Chenopodium quinoa HOM05D005419 ORTHO05D007365 1.7e-144 516.2 289 85.8
FAN20G2331 Fragaria x ananassa HOM05D005419 ORTHO05D007365 1.7e-144 516.2 292 84.6
Lj5g0012746 Lotus japonicus HOM05D005419 ORTHO05D007365 1.7e-144 516.2 288 84.0
MELO3C011274.2 Cucumis melo HOM05D005419 ORTHO05D007365 2.9e-144 515.4 292 84.6
Aqoxy7G03594 Aquilegia oxysepala HOM05D005419 ORTHO05D007365 3.8e-144 515.0 292 84.6
TPR.G14021 Trifolium pratense HOM05D005419 ORTHO05D007365 3.8e-144 515.0 288 84.0
CANSAT25G3306 Cannabis sativa HOM05D005419 ORTHO05D007365 4.9e-144 514.6 289 84.1
Haze_21481 Corylus avellana HOM05D005419 ORTHO05D007365 1.1e-143 513.5 321 77.6
Potri.018G023700 Populus trichocarpa HOM05D005419 ORTHO05D007365 2.4e-143 512.3 292 83.6
SGA_v2.0_scaffold20G09092 Striga asiatica HOM05D005419 ORTHO05D007365 2.4e-143 512.3 292 84.6
Nitab4.5_0007718g0040 Nicotiana tabacum HOM05D005419 ORTHO05D007365 3.2e-143 511.9 292 84.6
Nn2g12192 Nelumbo nucifera HOM05D005419 ORTHO05D007365 4.2e-143 511.5 292 83.6
A04p19650 Brassica napus HOM05D005419 ORTHO05D007365 5.5e-143 511.1 292 81.2
BraA04t17556Z Brassica rapa HOM05D005419 ORTHO05D007365 5.5e-143 511.1 292 81.2
Sp4g04430 Schrenkiella parvula HOM05D005419 ORTHO05D007365 5.5e-143 511.1 292 81.5
Ca_13036_v3 Cicer arietinum L. HOM05D005419 ORTHO05D007365 9.3e-143 510.4 288 81.9
BcaB06g28051 Brassica carinata HOM05D005419 ORTHO05D007365 1.6e-142 509.6 292 80.8
THA.LOC104805589 Tarenaya hassleriana HOM05D005419 ORTHO05D007365 2.1e-142 509.2 292 82.5
Sc09g0010330 Simmondsia chinensis HOM05D005419 ORTHO05D007365 4.6e-142 508.1 287 85.0
BolC4t27063H Brassica oleracea HOM05D005419 ORTHO05D007365 7.9e-142 507.3 292 80.5
C04p55260 Brassica napus HOM05D005419 ORTHO05D007365 1.8e-141 506.1 292 80.1
Cpa.g.sc187.13 Carica papaya HOM05D005419 ORTHO05D007365 1.8e-141 506.1 290 83.8
Psat6g028000 Pisum sativum HOM05D005419 ORTHO05D007365 1.8e-141 506.1 288 82.6
Thhalv10000272m.g Eutrema salsugineum HOM05D005419 ORTHO05D007365 2.3e-141 505.8 292 80.8
unitig_32.g10881 Utricularia gibba HOM05D005419 ORTHO05D007365 2.3e-141 505.8 290 81.7
BcaC02g08359 Brassica carinata HOM05D005419 ORTHO05D007365 5.1e-141 504.6 292 79.8
FAN27G2423 Fragaria x ananassa HOM05D005419 ORTHO05D007365 1.1e-140 503.4 292 83.9
THA.LOC104815027 Tarenaya hassleriana HOM05D005419 ORTHO05D007365 1.5e-140 503.1 287 84.0
Aa31sc229G10 Aethionema arabicum HOM05D005419 ORTHO05D007365 7.4e-140 500.7 292 79.1
PSO210G4598 Papaver somniferum HOM05D005419 ORTHO05D007365 1.6e-139 499.6 293 81.2
Carub.0004s0490 Capsella rubella HOM05D005419 ORTHO05D007365 2.1e-139 499.2 290 80.3
Potri.006G258200 Populus trichocarpa HOM05D005419 ORTHO05D007365 2.8e-139 498.8 292 82.2
AL4G16610 Arabidopsis lyrata HOM05D005419 ORTHO05D007365 4.0e-138 495.0 292 78.8
BcaB08g35172 Brassica carinata HOM05D005419 ORTHO05D007365 4.0e-138 495.0 292 78.8
AT2G25280 Arabidopsis thaliana HOM05D005419 ORTHO05D007365 5.3e-138 494.6 292 79.1
CDE03G0272 Ceratophyllum demersum HOM05D005419 ORTHO05D007365 5.3e-138 494.6 291 79.4
vmacro05161 Vaccinium macrocarpon HOM05D005419 ORTHO05D007365 6.9e-138 494.2 271 87.5
Os08g0299000 Oryza sativa ssp. japonica HOM05D005419 ORTHO05D007365 9.0e-138 493.8 290 79.7
Lsat_1_v5_gn_5_157921 Lactuca sativa HOM05D005419 ORTHO05D007365 3.8e-136 488.4 288 81.2
A09p55730 Brassica napus HOM05D005419 ORTHO05D007365 4.9e-136 488.0 292 77.1
BraA09t40974Z Brassica rapa HOM05D005419 ORTHO05D007365 4.9e-136 488.0 292 77.1
BcaC07g40875 Brassica carinata HOM05D005419 ORTHO05D007365 1.4e-135 486.5 287 78.0
MBI15_g25765_MAGBIO Magnolia biondii HOM05D005419 ORTHO05D007365 1.4e-135 486.5 290 79.3
C08p38730 Brassica napus HOM05D005419 ORTHO05D007365 2.5e-135 485.7 292 76.7
BolC8t51443H Brassica oleracea HOM05D005419 ORTHO05D007365 2.5e-135 485.7 292 76.7
Prupe.1G484800 Prunus persica HOM05D005419 ORTHO05D007365 3.2e-135 485.3 273 85.3
HPP92_000481 Vanilla planifolia HOM05D005419 ORTHO05D007365 3.2e-135 485.3 291 77.7
Zm00001eb362830 Zea mays HOM05D005419 ORTHO05D007365 1.6e-134 483.0 289 81.0
CANSAT54G2335 Cannabis sativa HOM05D005419 ORTHO05D007365 6.0e-134 481.1 289 77.2
Duzib168G1909 Durio zibethinus HOM05D005419 ORTHO05D007365 7.9e-134 480.7 292 81.5
FAN15G2739 Fragaria x ananassa HOM05D005419 ORTHO05D007365 1.0e-133 480.3 273 84.2
Rhsim12G0212900 Rhododendron simsii HOM05D005419 ORTHO05D007365 6.7e-133 477.6 292 80.1
COL.COLO4_18897 Corchorus olitorius HOM05D005419 ORTHO05D007365 2.5e-132 475.7 252 88.5
ATR0767G069 Amborella trichopoda HOM05D005419 ORTHO05D007365 1.3e-131 473.4 271 84.5
Sabra18G0026400 Salix brachista HOM05D005419 ORTHO05D007365 3.7e-131 471.9 272 83.1
ClCG08G013470 Citrullus lanatus HOM05D005419 ORTHO05D007365 3.4e-129 465.3 313 74.8
Sed0006243 Sechium edule HOM05D005419 ORTHO05D007365 4.5e-129 464.9 289 75.8
CARHR116260 Cardamine hirsuta HOM05D005419 ORTHO05D007365 1.7e-128 463.0 294 73.8
Dinv18189 Davidia involucrata HOM05D005419 ORTHO05D007365 5.0e-128 461.5 292 78.4
Hund04483 Selenicereus undatus HOM05D005419 ORTHO05D007365 6.7e-125 451.1 310 71.3
Mapoly0065s0048 Marchantia polymorpha HOM05D005419 ORTHO05D007365 3.7e-123 445.3 287 72.8
SMO358G0334 Selaginella moellendorffii HOM05D005419 ORTHO05D007365 3.4e-121 438.7 288 71.9
MBI15_g36826_MAGBIO Magnolia biondii HOM05D005419 ORTHO05D007365 1.6e-118 429.9 271 77.1
Pp3c14_17280 Physcomitrium patens HOM05D005419 ORTHO05D007365 6.7e-117 424.5 281 69.0
Pp3c2_14390 Physcomitrium patens HOM05D005419 ORTHO05D007365 9.1e-114 414.1 266 72.2
SEGI_34683 Sequoiadendron giganteum HOM05D005419 ORTHO05D007365 9.1e-114 414.1 273 71.1
CBR_g59364 Chara braunii HOM05D005419 ORTHO05D007365 2.3e-109 399.4 281 66.5
SEGI_02513 Sequoiadendron giganteum HOM05D005419 ORTHO05D007365 1.5e-103 380.2 223 80.7
Rhsim07G0160700 Rhododendron simsii HOM05D005419 ORTHO05D007365 2.2e-96 356.3 323 60.1
Oeu012280.1 Olea europaea HOM05D005419 ORTHO05D007365 6.3e-91 338.2 190 85.3
THA.LOC104815144 Tarenaya hassleriana HOM05D005419 ORTHO05D007365 4.5e-89 332.0 183 88.0
CAN.G75.9 Capsicum annuum HOM05D005419 ORTHO05D007365 9.5e-87 324.3 186 84.9
PRCOL_00000176 Prasinoderma coloniale HOM05D005419 ORTHO05D007365 1.8e-82 310.1 296 54.7
MCO07G667 Micromonas commoda HOM05D005419 ORTHO05D007365 2.0e-81 306.6 297 54.9
Cre02.g096200 Chlamydomonas reinhardtii HOM05D005419 ORTHO05D007365 2.7e-81 306.2 289 50.9
AagrBONN_evm.TU.Sc2ySwM_368.1912 Anthoceros agrestis HOM05D005419 ORTHO05D007365 1.6e-78 297.0 188 75.5
Sabra06G0201900 Salix brachista HOM05D005419 ORTHO05D007365 4.7e-78 295.4 173 82.1
Haze_26290 Corylus avellana HOM05D005419 ORTHO05D007365 1.9e-71 273.5 293 46.4
Cfa026845 Carpinus fangiana HOM05D005419 ORTHO05D007365 4.9e-59 232.3 310 45.8
Lalb_Chr11g0063641 Lupinus albus HOM05D005419 ORTHO05D007365 7.1e-58 228.4 164 70.7
FAN09G2129 Fragaria x ananassa HOM05D005419 ORTHO05D019206 3.6e-54 216.1 224 53.6
FAN28G2535 Fragaria x ananassa HOM05D005419 ORTHO05D019206 1.5e-52 210.7 221 53.4
Oeu012278.1 Olea europaea HOM05D005419 ORTHO05D007365 1.6e-46 190.7 106 84.0
FAN01G2683 Fragaria x ananassa HOM05D005419 ORTHO05D019206 3.4e-44 183.0 101 87.1
FAN02G2313 Fragaria x ananassa HOM05D005419 ORTHO05D019206 5.8e-44 182.2 102 85.3
FAN21G3387 Fragaria x ananassa HOM05D005419 ORTHO05D019206 3.5e-41 172.9 97 85.6
Os05g0310750 Oryza sativa ssp. japonica HOM05D005419 ORTHO05D019206 2.0e-28 130.6 76 82.9
FAN05G2233 Fragaria x ananassa HOM05D004769 ORTHO05D005605 3.0e-24 116.7 216 36.6
FAN16G2296 Fragaria x ananassa HOM05D005419 ORTHO05D019206 2.5e-23 113.6 97 63.9
MBI12_g19406_MAGBIO Magnolia biondii HOM05D005419 ORTHO05D242193 2.3e-08 63.9 48 62.5
Prupe.1G567700 Prunus persica HOM05D005419 ORTHO05D019206 5.1e-08 62.8 40 80.0


User provided reference genes

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