Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g00220 Coffea canephora HOM05D003969 ORTHO05D003125 2.2e-146 522.3 271 100.0
Oeu057292.1 Olea europaea HOM05D003969 ORTHO05D003125 2.3e-26 123.6 187 47.6
Peaxi162Scf00116g00085 Petunia axillaris HOM05D003969 ORTHO05D003125 1.1e-25 121.3 188 45.2
Migut.A00008 Erythranthe guttata HOM05D003969 ORTHO05D003125 2.5e-25 120.2 136 52.2
PGSC0003DMG400029901 Solanum tuberosum HOM05D003969 ORTHO05D003125 2.9e-21 106.7 134 53.0
CSS0007982 Camellia sinensis var. sinensis HOM05D003969 ORTHO05D003125 6.4e-21 105.5 133 51.9
Oeu010893.1 Olea europaea HOM05D003969 ORTHO05D003125 6.4e-21 105.5 108 58.3
Rhsim02G0205800 Rhododendron simsii HOM05D003969 ORTHO05D003125 9.2e-20 101.7 174 45.4
Sopen08g011970 Solanum pennellii HOM05D003969 ORTHO05D003125 4.6e-19 99.4 135 48.9
Hma1.2p1_0228F.1_g096590 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 1.0e-18 98.2 145 46.9
Solyc08g041810.1 Solanum lycopersicum HOM05D003969 ORTHO05D003125 1.3e-18 97.8 135 48.1
SGA_v2.0_scaffold64G21997 Striga asiatica HOM05D003969 ORTHO05D003125 3.0e-18 96.7 137 45.3
Dinv41425 Davidia involucrata HOM05D003969 ORTHO05D003125 3.9e-18 96.3 137 43.8
Dinv15887 Davidia involucrata HOM05D003969 ORTHO05D003125 2.5e-17 93.6 142 43.0
Peaxi162Scf00315g00011 Petunia axillaris HOM05D003969 ORTHO05D003125 7.3e-17 92.0 131 42.0
Nn2g12243 Nelumbo nucifera HOM05D003969 ORTHO05D003125 2.1e-16 90.5 138 43.5
Nitab4.5_0002992g0060 Nicotiana tabacum HOM05D003969 ORTHO05D003125 6.2e-16 89.0 194 37.1
Nitab4.5_0010572g0020 Nicotiana tabacum HOM05D003969 ORTHO05D003125 1.1e-15 88.2 183 38.8
TAR626G0029 Trochodendron aralioides HOM05D003969 ORTHO05D003125 1.8e-15 87.4 138 40.6
Nitab4.5_0000069g0040 Nicotiana tabacum HOM05D003969 ORTHO05D003125 3.1e-15 86.7 135 43.7
TAR636G2249 Trochodendron aralioides HOM05D003969 ORTHO05D003125 4.0e-15 86.3 130 42.3
MSTRG.26029 Avicennia marina HOM05D003969 ORTHO05D003125 5.3e-15 85.9 132 45.5
Dinv11721 Davidia involucrata HOM05D003969 ORTHO05D003125 2.0e-14 84.0 79 58.2
Hma1.2p1_0182F.1_g080470 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 2.6e-14 83.6 134 38.8
Hma1.2p1_2744F.1_g327795 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 2.6e-14 83.6 134 38.8
TAR625G0404 Trochodendron aralioides HOM05D003969 ORTHO05D003125 7.6e-14 82.0 132 43.9
MBI14_g03633_MAGBIO Magnolia biondii HOM05D003969 ORTHO05D003125 2.2e-13 80.5 133 40.6
Nn8g39714 Nelumbo nucifera HOM05D003969 ORTHO05D003125 2.9e-13 80.1 133 40.6
PGSC0003DMG400005307 Solanum tuberosum HOM05D003969 ORTHO05D003125 2.9e-13 80.1 130 38.5
Hma1.2p1_1784F.1_g302146 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 4.9e-13 79.3 140 40.0
Hma1.2p1_1784F.1_g302150 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 4.9e-13 79.3 140 40.0
Solyc01g011390.2 Solanum lycopersicum HOM05D003969 ORTHO05D003125 4.9e-13 79.3 131 40.5
Actinidia21911 Actinidia chinensis HOM05D003969 ORTHO05D003125 8.4e-13 78.6 143 37.8
Lsat_1_v5_gn_8_63081 Lactuca sativa HOM05D003969 ORTHO05D003125 8.4e-13 78.6 132 37.9
TAR383G0074 Trochodendron aralioides HOM05D003969 ORTHO05D003125 3.2e-12 76.6 138 39.1
Sopen01g007400 Solanum pennellii HOM05D003969 ORTHO05D003125 4.2e-12 76.3 133 39.8
Peaxi162Scf00391g00017 Petunia axillaris HOM05D003969 ORTHO05D003125 3.5e-11 73.2 124 40.3
Ca_21615_v3 Cicer arietinum L. HOM05D003969 ORTHO05D003125 1.3e-10 71.2 120 41.7
ClCG02G017250 Citrullus lanatus HOM05D003969 ORTHO05D003125 2.3e-10 70.5 138 38.4
HPP92_005341 Vanilla planifolia HOM05D003969 ORTHO05D003125 3.0e-10 70.1 130 36.2
CANSAT11G0887 Cannabis sativa HOM05D003969 ORTHO05D003125 3.9e-10 69.7 135 36.3
Sed0021780 Sechium edule HOM05D003969 ORTHO05D003125 5.1e-10 69.3 130 37.7
TPR.G38870 Trifolium pratense HOM05D013068 ORTHO05D003125 5.1e-10 69.3 147 34.7
Cpa.g.sc46.86 Carica papaya HOM05D003969 ORTHO05D003125 1.1e-09 68.2 149 36.9
Cc06_g07430 Coffea canephora HOM05D003969 ORTHO05D003125 2.5e-09 67.0 128 39.8
HanXRQChr05g0141561 Helianthus annuus HOM05D003969 ORTHO05D003125 2.5e-09 67.0 119 38.7
HPP92_006060 Vanilla planifolia HOM05D003969 ORTHO05D003125 2.5e-09 67.0 80 50.0
Lalb_Chr24g0402081 Lupinus albus HOM05D013068 ORTHO05D003125 3.3e-09 66.6 140 35.0
Sc23g0006560 Simmondsia chinensis HOM05D003969 ORTHO05D003125 3.3e-09 66.6 150 36.7
Lsat_1_v5_gn_5_39780 Lactuca sativa HOM05D003969 ORTHO05D003125 4.3e-09 66.2 148 37.2
Psat4g033280 Pisum sativum HOM05D003969 ORTHO05D003125 4.3e-09 66.2 116 39.7
Rhsim03G0254600 Rhododendron simsii HOM05D000320 ORTHO05D000532 4.3e-09 66.2 137 38.0
Actinidia04245 Actinidia chinensis HOM05D003969 ORTHO05D003125 5.6e-09 65.9 139 36.0
TWI34G1911 Tripterygium wilfordii HOM05D003969 ORTHO05D003125 5.6e-09 65.9 143 36.4
Lalb_Chr22g0361461 Lupinus albus HOM05D013068 ORTHO05D003125 7.3e-09 65.5 135 38.5
PSO675G3576 Papaver somniferum HOM05D003969 ORTHO05D003125 7.3e-09 65.5 144 34.0
QL02p020337 Quercus lobata HOM05D008824 ORTHO05D003125 7.3e-09 65.5 138 37.0
Sc23g0006570 Simmondsia chinensis HOM05D003969 ORTHO05D003125 7.3e-09 65.5 134 39.6
MELO3C016989.2 Cucumis melo HOM05D003969 ORTHO05D003125 9.6e-09 65.1 77 48.1
PSO732G0403 Papaver somniferum HOM05D003969 ORTHO05D003125 1.6e-08 64.3 144 34.0
ClCG05G016610 Citrullus lanatus HOM05D003969 ORTHO05D003125 2.1e-08 63.9 129 37.2
Medtr4g116500 Medicago truncatula HOM05D003969 ORTHO05D003125 2.1e-08 63.9 135 37.8
Ah.10g035700 Amaranthus hybridus HOM05D003969 ORTHO05D003125 2.8e-08 63.5 132 35.6
EL10Ac2g04157 Beta vulgaris HOM05D003969 ORTHO05D003125 2.8e-08 63.5 128 34.4
Cfa013102 Carpinus fangiana HOM05D003969 ORTHO05D003125 3.6e-08 63.2 79 46.8
Lj5g0018030 Lotus japonicus HOM05D013068 ORTHO05D003125 3.6e-08 63.2 147 36.1
Phvul.001G047400 Phaseolus vulgaris HOM05D013068 ORTHO05D003125 3.6e-08 63.2 144 36.8
ClCG08G013530 Citrullus lanatus HOM05D008824 ORTHO05D003125 4.8e-08 62.8 126 34.9
MELO3C004442.2 Cucumis melo HOM05D003969 ORTHO05D003125 4.8e-08 62.8 99 47.5
Glyma.17G215400 Glycine max HOM05D013068 ORTHO05D003125 4.8e-08 62.8 137 37.2
Sc08g0005750 Simmondsia chinensis HOM05D003969 ORTHO05D003125 4.8e-08 62.8 140 38.6
arahy.Tifrunner.gnm1.ann1.NDRC00 Arachis hypogaea HOM05D013068 ORTHO05D003125 6.2e-08 62.4 154 33.8
Glyma.14G112500 Glycine max HOM05D003969 ORTHO05D003125 6.2e-08 62.4 141 39.7
Potri.006G259200 Populus trichocarpa HOM05D008824 ORTHO05D003125 6.2e-08 62.4 140 37.9
THA.LOC104815009 Tarenaya hassleriana HOM05D008824 ORTHO05D003125 6.2e-08 62.4 126 38.1
arahy.Tifrunner.gnm1.ann1.75VKL2 Arachis hypogaea HOM05D013068 ORTHO05D003125 1.1e-07 61.6 154 33.8
ECA236G4020 Erigeron canadensis HOM05D003969 ORTHO05D003125 1.1e-07 61.6 129 34.1
VMungo0647G1373 Vigna mungo HOM05D013068 ORTHO05D003125 1.1e-07 61.6 145 38.6
Haze_21463 Corylus avellana HOM05D008824 ORTHO05D003125 1.4e-07 61.2 79 45.6
PGSC0003DMG400030696 Solanum tuberosum HOM05D003969 ORTHO05D003125 1.4e-07 61.2 129 38.0
arahy.Tifrunner.gnm1.ann1.8XJ8NX Arachis hypogaea HOM05D013068 ORTHO05D003125 1.8e-07 60.8 51 60.8
Eucgr.C01701 Eucalyptus grandis HOM05D003969 ORTHO05D003125 1.8e-07 60.8 122 38.5
Prupe.7G255000 Prunus persica HOM05D003969 ORTHO05D003125 1.8e-07 60.8 59 59.3
Solyc07g007150.1 Solanum lycopersicum HOM05D003969 ORTHO05D003125 1.8e-07 60.8 128 38.3
Sopen07g003200 Solanum pennellii HOM05D003969 ORTHO05D003125 1.8e-07 60.8 127 37.8
CAN.G551.21 Capsicum annuum HOM05D003969 ORTHO05D003125 2.4e-07 60.5 119 37.8
Aqoxy7G00610 Aquilegia oxysepala HOM05D003969 ORTHO05D003125 3.1e-07 60.1 135 31.9
CsaV3_4G036890 Cucumis sativus L. HOM05D003969 ORTHO05D003125 3.1e-07 60.1 111 38.7
Sopen12g005450 Solanum pennellii HOM05D003969 ORTHO05D003125 4.0e-07 59.7 119 37.0
Manes.03G012100 Manihot esculenta HOM05D003969 ORTHO05D003125 5.3e-07 59.3 136 34.6
PGR031G2169 Punica granatum HOM05D003969 ORTHO05D003125 5.3e-07 59.3 77 42.9
PGR142G4289 Punica granatum HOM05D003969 ORTHO05D003125 5.3e-07 59.3 140 36.4
SalBow1G8303 Salvia bowleyana HOM05D003969 ORTHO05D003125 5.3e-07 59.3 121 38.0
Sed0009487 Sechium edule HOM05D003969 ORTHO05D003125 5.3e-07 59.3 49 61.2
THA.LOC104814116 Tarenaya hassleriana HOM05D008824 ORTHO05D003125 5.3e-07 59.3 116 38.8
Actinidia23308 Actinidia chinensis HOM05D003969 ORTHO05D003125 6.9e-07 58.9 108 39.8
CDE02G3523 Ceratophyllum demersum HOM05D000894 ORTHO05D001833 6.9e-07 58.9 119 35.3
AUR62031569 Chenopodium quinoa HOM05D003969 ORTHO05D003125 6.9e-07 58.9 81 43.2
arahy.Tifrunner.gnm1.ann1.H8K6JA Arachis hypogaea HOM05D013068 ORTHO05D003125 9.0e-07 58.5 127 37.8
Eucgr.C01640 Eucalyptus grandis HOM05D003969 ORTHO05D003125 9.0e-07 58.5 84 44.0
CSS0019227 Camellia sinensis var. sinensis HOM05D003969 ORTHO05D003125 1.2e-06 58.2 137 36.5
CSS0049905 Camellia sinensis var. sinensis HOM05D003969 ORTHO05D003125 1.2e-06 58.2 137 36.5
Haze_19321 Corylus avellana HOM05D003969 ORTHO05D003125 1.5e-06 57.8 83 45.8
Phvul.003G174600 Phaseolus vulgaris HOM05D003969 ORTHO05D003125 1.5e-06 57.8 132 36.4
Solyc12g010430.1 Solanum lycopersicum HOM05D003969 ORTHO05D003125 1.5e-06 57.8 119 36.1
Atru.chr7.2498 Acer truncatum HOM05D003969 ORTHO05D003125 2.0e-06 57.4 78 48.7
AL7G43940 Arabidopsis lyrata HOM05D003969 ORTHO05D003125 2.0e-06 57.4 52 53.8
Gohir.A13G203200 Gossypium hirsutum HOM05D003969 ORTHO05D003125 2.0e-06 57.4 146 34.9
Sc23g0006550 Simmondsia chinensis HOM05D003969 ORTHO05D003125 2.0e-06 57.4 128 37.5
Medtr1g012950 Medicago truncatula HOM05D013068 ORTHO05D003125 2.6e-06 57.0 147 34.0
CiPaw.07G226900 Carya illinoinensis HOM05D003969 ORTHO05D003125 3.4e-06 56.6 134 37.3
Eucgr.L03259 Eucalyptus grandis HOM05D003969 ORTHO05D003125 3.4e-06 56.6 78 43.6
Manes.16G125900 Manihot esculenta HOM05D008824 ORTHO05D003125 3.4e-06 56.6 118 36.4
RcHm_v2.0_Chr2g0086701 Rosa chinensis HOM05D003969 ORTHO05D003125 3.4e-06 56.6 111 41.4
TPR.G15776 Trifolium pratense HOM05D003969 ORTHO05D003125 3.4e-06 56.6 120 34.2
VMungo1215G0564 Vigna mungo HOM05D003969 ORTHO05D003125 3.4e-06 56.6 49 59.2
CiPaw.15G182600 Carya illinoinensis HOM05D003969 ORTHO05D003125 4.5e-06 56.2 54 51.9
Thhalv10005689m.g Eutrema salsugineum HOM05D003969 ORTHO05D003125 4.5e-06 56.2 138 31.9
Thhalv10016092m.g Eutrema salsugineum HOM05D008824 ORTHO05D003125 4.5e-06 56.2 106 42.5
FAN19G0689 Fragaria x ananassa HOM05D003969 ORTHO05D003125 4.5e-06 56.2 113 41.6
AUR62041449 Chenopodium quinoa HOM05D003969 ORTHO05D003125 5.8e-06 55.8 59 47.5
FAN26G0199 Fragaria x ananassa HOM05D003969 ORTHO05D003125 5.8e-06 55.8 112 42.9
Gorai.013G237600 Gossypium raimondii HOM05D003969 ORTHO05D003125 5.8e-06 55.8 146 34.9
EL10Ac8g18819 Beta vulgaris HOM05D003969 ORTHO05D003125 7.6e-06 55.5 149 34.9
Migut.K00379 Erythranthe guttata HOM05D003969 ORTHO05D003125 7.6e-06 55.5 48 54.2
Sabra18G0025300 Salix brachista HOM05D008824 ORTHO05D003125 7.6e-06 55.5 79 44.3
Sp7g07270 Schrenkiella parvula HOM05D003969 ORTHO05D003125 7.6e-06 55.5 132 31.8
CARHR217160 Cardamine hirsuta HOM05D003969 ORTHO05D003125 9.9e-06 55.1 141 31.9
MELO3C030306.2 Cucumis melo HOM05D008824 ORTHO05D003125 9.9e-06 55.1 86 39.5
Eucgr.C01695 Eucalyptus grandis HOM05D003969 ORTHO05D003125 9.9e-06 55.1 128 36.7
Lalb_Chr12g0198511 Lupinus albus HOM05D003969 ORTHO05D003125 9.9e-06 55.1 134 34.3
Nitab4.5_0017863g0010 Nicotiana tabacum HOM05D003969 ORTHO05D003125 9.9e-06 55.1 140 37.9


User provided reference genes

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