Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g00010 Coffea canephora HOM05D005624 ORTHO05D006896 3.5e-58 228.0 112 100.0
Cc06_g22650 Coffea canephora HOM05D005624 ORTHO05D006896 1.1e-43 179.9 112 80.4
Cc11_g14800 Coffea canephora HOM05D005624 ORTHO05D006896 2.6e-29 132.1 75 84.0
Cc10_g16310 Coffea canephora HOM05D005624 ORTHO05D006896 4.2e-27 124.8 76 80.3
BcaB01g05468 Brassica carinata HOM05D005624 ORTHO05D006896 6.1e-26 120.9 75 73.3
A03p05080 Brassica napus HOM05D000602 ORTHO05D006896 6.1e-26 120.9 75 73.3
BraA03t09846Z Brassica rapa HOM05D005624 ORTHO05D006896 6.1e-26 120.9 75 73.3
Oeu032685.1 Olea europaea HOM05D005624 ORTHO05D006896 6.1e-26 120.9 75 74.7
CiPaw.05G096300 Carya illinoinensis HOM05D005624 ORTHO05D006896 8.0e-26 120.6 75 73.3
C03p05810 Brassica napus HOM05D000602 ORTHO05D006896 1.0e-25 120.2 75 72.0
BolC3t13101H Brassica oleracea HOM05D005624 ORTHO05D006896 1.0e-25 120.2 75 72.0
CANSAT25G1757 Cannabis sativa HOM05D005624 ORTHO05D006896 1.0e-25 120.2 75 73.3
COL.COLO4_32213 Corchorus olitorius HOM05D005624 ORTHO05D006896 1.0e-25 120.2 75 73.3
CiPaw.06G112400 Carya illinoinensis HOM05D005624 ORTHO05D006896 2.3e-25 119.0 74 74.3
Thhalv10014678m.g Eutrema salsugineum HOM05D005624 ORTHO05D006896 2.3e-25 119.0 75 70.7
AL6G22400 Arabidopsis lyrata HOM05D005624 ORTHO05D006896 3.0e-25 118.6 75 70.7
AT5G11680 Arabidopsis thaliana HOM05D005624 ORTHO05D006896 3.0e-25 118.6 75 70.7
Gohir.A08G221500 Gossypium hirsutum HOM05D005624 ORTHO05D006896 3.9e-25 118.2 75 73.3
Gohir.D08G238100 Gossypium hirsutum HOM05D005624 ORTHO05D006896 3.9e-25 118.2 75 73.3
Gorai.004G253600 Gossypium raimondii HOM05D005624 ORTHO05D006896 3.9e-25 118.2 75 73.3
Manes.08G097600 Manihot esculenta HOM05D005624 ORTHO05D006896 6.7e-25 117.5 75 72.0
PGR119G0553 Punica granatum HOM05D005624 ORTHO05D006896 6.7e-25 117.5 75 73.3
Actinidia33983 Actinidia chinensis HOM05D005624 ORTHO05D006896 8.8e-25 117.1 75 73.3
Cfa020947 Carpinus fangiana HOM05D005624 ORTHO05D006896 8.8e-25 117.1 75 72.0
Haze_19383 Corylus avellana HOM05D005624 ORTHO05D006896 8.8e-25 117.1 75 72.0
PSO478G3843 Papaver somniferum HOM05D005624 ORTHO05D006896 1.1e-24 116.7 75 69.3
Sp6g31930 Schrenkiella parvula HOM05D005624 ORTHO05D006896 1.5e-24 116.3 75 68.0
CSS0016097 Camellia sinensis var. sinensis HOM05D005624 ORTHO05D006896 2.0e-24 115.9 75 72.0
Eucgr.J01702 Eucalyptus grandis HOM05D005624 ORTHO05D006896 2.0e-24 115.9 75 72.0
Prupe.1G209600 Prunus persica HOM05D005624 ORTHO05D006896 2.0e-24 115.9 75 70.7
Aqoxy3G01649 Aquilegia oxysepala HOM05D005624 ORTHO05D006896 3.3e-24 115.2 75 72.0
QL03p047013 Quercus lobata HOM05D005624 ORTHO05D006896 3.3e-24 115.2 75 70.7
SalBow2G1530 Salvia bowleyana HOM05D005624 ORTHO05D006896 3.3e-24 115.2 75 72.0
THA.LOC104811263 Tarenaya hassleriana HOM05D005624 ORTHO05D006896 3.3e-24 115.2 75 69.3
GSVIVG01001144001 Vitis vinifera HOM05D005624 ORTHO05D006896 3.3e-24 115.2 75 72.0
CARHR201540 Cardamine hirsuta HOM05D005624 ORTHO05D006896 4.4e-24 114.8 75 66.7
Migut.L00595 Erythranthe guttata HOM05D005624 ORTHO05D006896 7.4e-24 114.0 75 68.0
Migut.L00899 Erythranthe guttata HOM05D005624 ORTHO05D006896 7.4e-24 114.0 75 68.0
BcaC03g13386 Brassica carinata HOM05D005624 ORTHO05D006896 9.7e-24 113.6 75 68.0
Duzib128G1380 Durio zibethinus HOM05D005624 ORTHO05D006896 9.7e-24 113.6 75 69.3
PSO017G6046 Papaver somniferum HOM05D005624 ORTHO05D006896 1.3e-23 113.2 75 68.0
FvH4_4g21930 Fragaria vesca HOM05D005624 ORTHO05D006896 1.7e-23 112.8 75 69.3
Rhsim12G0090500 Rhododendron simsii HOM05D005624 ORTHO05D006896 1.7e-23 112.8 75 72.0
Aa31LG3G15530 Aethionema arabicum HOM05D000602 ORTHO05D001147 2.2e-23 112.5 75 68.0
Carub.0006s1018 Capsella rubella HOM05D005624 ORTHO05D006896 2.2e-23 112.5 75 68.0
Duzib177G0503 Durio zibethinus HOM05D005624 ORTHO05D006896 2.2e-23 112.5 75 69.3
MD13G1135700 Malus domestica HOM05D005624 ORTHO05D006896 2.2e-23 112.5 75 68.0
TPR.G6115 Trifolium pratense HOM05D005624 ORTHO05D006896 2.2e-23 112.5 77 70.1
DCAR_028131 Daucus carota HOM05D005624 ORTHO05D006896 2.8e-23 112.1 75 65.3
TWI75G1298 Tripterygium wilfordii HOM05D005624 ORTHO05D006896 2.8e-23 112.1 81 67.9
TAR622G0071 Trochodendron aralioides HOM05D005624 ORTHO05D006896 2.8e-23 112.1 75 69.3
HPP92_013550 Vanilla planifolia HOM05D005624 ORTHO05D006896 3.7e-23 111.7 75 68.0
MSTRG.8074 Avicennia marina HOM05D005624 ORTHO05D006896 4.8e-23 111.3 77 71.4
TWI18G0768 Tripterygium wilfordii HOM05D005624 ORTHO05D006896 4.8e-23 111.3 77 70.1
FAN17G0486 Fragaria x ananassa HOM05D005624 ORTHO05D006896 6.3e-23 110.9 75 68.0
ClCG10G013180 Citrullus lanatus HOM05D005624 ORTHO05D006896 8.2e-23 110.5 75 68.0
Hma1.2p1_0562F.1_g179050 Hydrangea macrophylla HOM05D005624 ORTHO05D006896 1.4e-22 109.8 75 69.3
MD16G1131300 Malus domestica HOM05D005624 ORTHO05D006896 1.4e-22 109.8 76 69.7
VMungo0251G1277 Vigna mungo HOM05D005624 ORTHO05D006896 1.4e-22 109.8 77 68.8
Lj3A918T40 Lonicera japonica HOM05D005624 ORTHO05D006896 1.8e-22 109.4 75 68.0
BolC2t06481H Brassica oleracea HOM05D005624 ORTHO05D006896 2.4e-22 109.0 75 64.0
MELO3C026760.2 Cucumis melo HOM05D005624 ORTHO05D006896 2.4e-22 109.0 75 68.0
CsaV3_3G043430 Cucumis sativus L. HOM05D005624 ORTHO05D006896 2.4e-22 109.0 75 68.0
Atru.chr12.1491 Acer truncatum HOM05D005624 ORTHO05D006896 3.1e-22 108.6 75 70.7
Peaxi162Scf00334g00119 Petunia axillaris HOM05D005624 ORTHO05D006896 3.1e-22 108.6 75 69.3
Psat4g111480 Pisum sativum HOM05D005624 ORTHO05D006896 3.1e-22 108.6 76 67.1
unitig_8.g3112 Utricularia gibba HOM05D005624 ORTHO05D006896 3.1e-22 108.6 75 64.0
Glyma.08G266400 Glycine max HOM05D005624 ORTHO05D006896 5.3e-22 107.8 77 67.5
RcHm_v2.0_Chr4g0428141 Rosa chinensis HOM05D005624 ORTHO05D006896 5.3e-22 107.8 75 68.0
Sed0005404 Sechium edule HOM05D005624 ORTHO05D006896 5.3e-22 107.8 75 69.3
Glyma.16G101200 Glycine max HOM05D005624 ORTHO05D006896 7.0e-22 107.5 77 67.5
Sopen02g002020 Solanum pennellii HOM05D005624 ORTHO05D006896 7.0e-22 107.5 75 69.3
Medtr8g070860 Medicago truncatula HOM05D005624 ORTHO05D006896 9.1e-22 107.1 77 68.8
CAN.G39.18 Capsicum annuum HOM05D005624 ORTHO05D006896 1.6e-21 106.3 75 68.0
Phvul.003G274200 Phaseolus vulgaris HOM05D005624 ORTHO05D006896 1.6e-21 106.3 76 64.5
HanXRQChr10g0312121 Helianthus annuus HOM05D005624 ORTHO05D006896 2.0e-21 105.9 75 68.0
Lj4g0021292 Lotus japonicus HOM05D005624 ORTHO05D006896 2.0e-21 105.9 77 64.9
PGSC0003DMG400029983 Solanum tuberosum HOM05D005624 ORTHO05D006896 2.0e-21 105.9 75 68.0
ATR0582G264 Amborella trichopoda HOM05D005624 ORTHO05D006896 3.5e-21 105.1 75 64.0
unitig_22.g6367 Utricularia gibba HOM05D005624 ORTHO05D006896 3.5e-21 105.1 75 62.7
ECA236G4393 Erigeron canadensis HOM05D000127 ORTHO05D000243 4.5e-21 104.8 75 62.7
Zm00001eb102600 Zea mays HOM05D005624 ORTHO05D006896 4.5e-21 104.8 75 68.0
Nitab4.5_0011777g0020 Nicotiana tabacum HOM05D005624 ORTHO05D006896 5.9e-21 104.4 75 68.0
Zm00001eb318180 Zea mays HOM05D005624 ORTHO05D006896 5.9e-21 104.4 75 66.7
Solyc02g005603.1 Solanum lycopersicum HOM05D005624 ORTHO05D006896 7.7e-21 104.0 75 68.0
Thecc.05G235200 Theobroma cacao HOM05D005624 ORTHO05D006896 1.3e-20 103.2 75 65.3
Lsat_1_v5_gn_1_78160 Lactuca sativa HOM05D005624 ORTHO05D006896 1.7e-20 102.8 75 65.3
AUR62008562 Chenopodium quinoa HOM05D005624 ORTHO05D006896 2.2e-20 102.4 75 66.7
AUR62033199 Chenopodium quinoa HOM05D005624 ORTHO05D006896 2.2e-20 102.4 75 66.7
Nitab4.5_0001089g0030 Nicotiana tabacum HOM05D005624 ORTHO05D006896 2.2e-20 102.4 75 68.0
Ah.03g134040 Amaranthus hybridus HOM05D005624 ORTHO05D006896 3.8e-20 101.7 75 65.3
Ciclev10005917m.g Citrus clementina HOM05D005624 ORTHO05D006896 3.8e-20 101.7 75 65.3
Peaxi162Scf00681g00118 Petunia axillaris HOM05D005624 ORTHO05D006896 3.8e-20 101.7 75 68.0
Solyc04g009190.3 Solanum lycopersicum HOM05D005624 ORTHO05D006896 3.8e-20 101.7 75 66.7
Lalb_Chr05g0228971 Lupinus albus HOM05D005624 ORTHO05D006896 5.0e-20 101.3 77 61.0
Sed0018373 Sechium edule HOM05D005624 ORTHO05D006896 5.0e-20 101.3 75 64.0
Sabra01G0051200 Salix brachista HOM05D005624 ORTHO05D006896 6.5e-20 100.9 75 66.7
Potri.001G072600 Populus trichocarpa HOM05D005624 ORTHO05D006896 1.9e-19 99.4 75 66.7
Hund05398 Selenicereus undatus HOM05D005624 ORTHO05D006896 1.9e-19 99.4 75 66.7
Sc17g0003450 Simmondsia chinensis HOM05D005624 ORTHO05D006896 2.5e-19 99.0 76 68.4
Sopen04g004320 Solanum pennellii HOM05D005624 ORTHO05D006896 2.5e-19 99.0 75 65.3
Potri.003G158200 Populus trichocarpa HOM05D005624 ORTHO05D006896 3.2e-19 98.6 75 66.7
PGSC0003DMG402032565 Solanum tuberosum HOM05D005624 ORTHO05D006896 3.2e-19 98.6 75 65.3
EL10Ac7g17520 Beta vulgaris HOM05D005624 ORTHO05D006896 2.1e-18 95.9 75 64.0
arahy.Tifrunner.gnm1.ann1.CA7SJ1 Arachis hypogaea HOM05D005624 ORTHO05D006896 2.7e-18 95.5 77 61.0
arahy.Tifrunner.gnm1.ann1.YB0CZG Arachis hypogaea HOM05D005624 ORTHO05D006896 2.7e-18 95.5 77 61.0
CAN.G282.51 Capsicum annuum HOM05D005624 ORTHO05D006896 3.6e-18 95.1 75 62.7
SMO164G0111 Selaginella moellendorffii HOM05D005624 ORTHO05D006896 4.7e-18 94.7 75 58.7
Nitab4.5_0004301g0080 Nicotiana tabacum HOM05D005624 ORTHO05D006896 1.0e-17 93.6 75 61.3
Peaxi162Scf00021g02113 Petunia axillaris HOM05D005624 ORTHO05D006896 2.3e-17 92.4 75 58.7
Lsat_1_v5_gn_5_173840 Lactuca sativa HOM05D005624 ORTHO05D006896 3.0e-17 92.0 76 56.6
HanXRQChr01g0012261 Helianthus annuus HOM05D005624 ORTHO05D006896 4.0e-17 91.7 75 54.7
Nitab4.5_0000069g0230 Nicotiana tabacum HOM05D005624 ORTHO05D006896 1.2e-16 90.1 75 58.7
Solyc01g008220.3 Solanum lycopersicum HOM05D005624 ORTHO05D006896 2.6e-16 89.0 75 56.0
Pp3c7_9270 Physcomitrium patens HOM05D005624 ORTHO05D006896 2.0e-13 79.3 75 49.3
Mapoly0097s0090 Marchantia polymorpha HOM05D005624 ORTHO05D006896 3.8e-12 75.1 75 49.3
AagrBONN_evm.TU.Sc2ySwM_117.3158 Anthoceros agrestis HOM05D005624 ORTHO05D006896 1.6e-10 69.7 77 48.1
vmacro16032 Vaccinium macrocarpon HOM05D005624 ORTHO05D006896 1.5e-08 63.2 54 59.3
Dinv02968 Davidia involucrata HOM05D005624 ORTHO05D006896 2.6e-08 62.4 37 75.7
Zm00001eb071390 Zea mays HOM05D005624 ORTHO05D006896 4.4e-08 61.6 38 73.7
Cre03.g189100 Chlamydomonas reinhardtii HOM05D005624 ORTHO05D006896 4.8e-07 58.2 64 50.0
MBI11_g04265_MAGBIO Magnolia biondii HOM05D005624 ORTHO05D006896 1.8e-06 56.2 37 67.6
SEGI_14660 Sequoiadendron giganteum HOM05D005624 ORTHO05D006896 7.0e-06 54.3 38 68.4


User provided reference genes

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