Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g21330 Coffea canephora HOM05D007286 ORTHO05D008955 9.2e-165 583.6 310 100.0
Peaxi162Scf00647g00320 Petunia axillaris HOM05D007286 ORTHO05D008955 8.6e-54 214.9 279 53.8
Sopen01g040600 Solanum pennellii HOM05D007286 ORTHO05D008955 2.6e-50 203.4 278 50.7
Solyc01g096890.4 Solanum lycopersicum HOM05D007286 ORTHO05D008955 1.3e-49 201.1 278 50.4
Nitab4.5_0005056g0090 Nicotiana tabacum HOM05D007286 ORTHO05D008955 2.9e-49 199.9 279 50.9
Nitab4.5_0001611g0060 Nicotiana tabacum HOM05D007286 ORTHO05D008955 3.7e-49 199.5 278 51.1
PGSC0003DMG401027501 Solanum tuberosum HOM05D007286 ORTHO05D008955 1.2e-47 194.5 279 49.5
CAN.G134.51 Capsicum annuum HOM05D007286 ORTHO05D008955 1.3e-46 191.0 278 51.4
CSS0007228 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 2.5e-37 160.2 290 46.6
CSS0046865 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D008955 2.5e-37 160.2 290 46.6
Ciclev10000662m.g Citrus clementina HOM05D007286 ORTHO05D008955 1.1e-35 154.8 301 43.2
Rhsim07G0072400 Rhododendron simsii HOM05D007286 ORTHO05D008955 2.9e-33 146.7 296 42.9
Hma1.2p1_0233F.1_g097980 Hydrangea macrophylla HOM05D007286 ORTHO05D008955 4.1e-32 142.9 298 42.6
vmacro13789 Vaccinium macrocarpon HOM05D007286 ORTHO05D008955 9.5e-29 131.7 293 41.0
vmacro23447 Vaccinium macrocarpon HOM05D007286 ORTHO05D008955 9.5e-29 131.7 293 41.0
TAR555G0002 Trochodendron aralioides HOM05D007286 ORTHO05D008955 3.1e-27 126.7 310 38.4
MSTRG.20479 Avicennia marina HOM05D007286 ORTHO05D008955 6.8e-27 125.6 251 43.0
GSVIVG01027344001 Vitis vinifera HOM05D007286 ORTHO05D008955 6.8e-27 125.6 286 38.5
MBI19_g06405_MAGBIO Magnolia biondii HOM05D007286 ORTHO05D008955 4.4e-26 122.9 298 40.9
QL04p050581 Quercus lobata HOM05D007286 ORTHO05D008955 9.9e-26 121.7 298 40.9
Nn7g37274 Nelumbo nucifera HOM05D007286 ORTHO05D008955 1.3e-25 121.3 300 38.3
SGA_v2.0_scaffold143G35713 Striga asiatica HOM05D007286 ORTHO05D008955 4.9e-25 119.4 289 37.4
AUR62041274 Chenopodium quinoa HOM05D007286 ORTHO05D008955 5.4e-24 115.9 312 36.2
Oeu013048.2 Olea europaea HOM05D007286 ORTHO05D008955 1.2e-23 114.8 257 39.3
Migut.B01162 Erythranthe guttata HOM05D007286 ORTHO05D008955 4.6e-23 112.8 246 39.8
DCAR_025313 Daucus carota HOM05D007286 ORTHO05D008955 1.0e-22 111.7 324 36.7
Potri.010G247100 Populus trichocarpa HOM05D007286 ORTHO05D008955 1.0e-22 111.7 306 36.9
SalBow8G2801 Salvia bowleyana HOM05D007286 ORTHO05D008955 1.0e-22 111.7 255 38.8
Prupe.2G060300 Prunus persica HOM05D007286 ORTHO05D008955 1.7e-22 110.9 310 37.7
Lsat_1_v5_gn_5_41960 Lactuca sativa HOM05D007286 ORTHO05D008955 5.1e-22 109.4 307 40.1
TWI38G1128 Tripterygium wilfordii HOM05D007286 ORTHO05D008955 6.6e-22 109.0 298 35.9
Haze_03401 Corylus avellana HOM05D007286 ORTHO05D008955 1.1e-21 108.2 287 37.6
Cfa010442 Carpinus fangiana HOM05D007286 ORTHO05D008955 1.9e-21 107.5 286 37.4
CsaV3_5G034980 Cucumis sativus L. HOM05D007286 ORTHO05D008955 2.5e-21 107.1 313 35.5
Hund06829 Selenicereus undatus HOM05D007286 ORTHO05D008955 3.3e-21 106.7 301 34.2
CANSAT56G4194 Cannabis sativa HOM05D007286 ORTHO05D008955 1.2e-20 104.8 254 39.0
CANSAT56G1680 Cannabis sativa HOM05D007286 ORTHO05D008955 2.8e-20 103.6 254 38.6
Dinv30991 Davidia involucrata HOM05D007286 ORTHO05D008955 2.8e-20 103.6 284 36.6
Dinv31112 Davidia involucrata HOM05D007286 ORTHO05D008955 2.8e-20 103.6 284 36.6
AUR62034104 Chenopodium quinoa HOM05D007286 ORTHO05D008955 4.7e-20 102.8 311 33.4
MD02G1265200 Malus domestica HOM05D007286 ORTHO05D008955 8.1e-20 102.1 314 35.7
Sabra10G0192500 Salix brachista HOM05D007286 ORTHO05D008955 8.1e-20 102.1 309 35.6
Cfa000528 Carpinus fangiana HOM05D007286 ORTHO05D008955 1.1e-19 101.7 281 37.4
FAN06G0358 Fragaria x ananassa HOM05D007286 ORTHO05D008955 3.1e-19 100.1 308 37.0
RcHm_v2.0_Chr1g0331161 Rosa chinensis HOM05D007286 ORTHO05D008955 4.0e-19 99.8 317 36.6
MELO3C012308.2 Cucumis melo HOM05D007286 ORTHO05D008955 6.9e-19 99.0 309 35.0
PSO339G4644 Papaver somniferum HOM05D007286 ORTHO05D008955 6.9e-19 99.0 304 37.5
Actinidia12136 Actinidia chinensis HOM05D007286 ORTHO05D008955 9.0e-19 98.6 291 38.1
PGR142G0126 Punica granatum HOM05D007286 ORTHO05D008955 9.0e-19 98.6 302 35.4
ECA246G2791 Erigeron canadensis HOM05D000076 ORTHO05D002730 1.2e-18 98.2 290 37.6
HanXRQChr07g0192711 Helianthus annuus HOM05D007286 ORTHO05D008955 1.5e-18 97.8 284 37.0
CiPaw.13G047300 Carya illinoinensis HOM05D007286 ORTHO05D008955 2.0e-18 97.4 293 36.5
ClCG05G022150 Citrullus lanatus HOM05D007286 ORTHO05D008955 3.4e-18 96.7 308 34.7
FvH4_7g04960 Fragaria vesca HOM05D007286 ORTHO05D008955 3.4e-18 96.7 308 36.7
FAN03G1022 Fragaria x ananassa HOM05D007286 ORTHO05D008955 9.9e-18 95.1 311 36.0
Sed0010854 Sechium edule HOM05D007286 ORTHO05D008955 1.3e-17 94.7 313 34.8
Eucgr.G02637 Eucalyptus grandis HOM05D007286 ORTHO05D008955 1.1e-16 91.7 266 37.6
FvH4_7g05350 Fragaria vesca HOM05D007286 ORTHO05D008955 1.1e-16 91.7 244 37.7
FAN10G3167 Fragaria x ananassa HOM05D007286 ORTHO05D008955 1.1e-16 91.7 304 35.9
Manes.10G063001 Manihot esculenta HOM05D000188 ORTHO05D000362 1.1e-16 91.7 294 34.7
COL.COLO4_28923 Corchorus olitorius HOM05D007286 ORTHO05D008955 1.4e-16 91.3 309 34.3
Potri.008G012000 Populus trichocarpa HOM05D007286 ORTHO05D008955 1.9e-16 90.9 312 34.9
Sabra08G0007300 Salix brachista HOM05D007286 ORTHO05D008955 1.9e-16 90.9 312 35.3
Aqoxy1G00088 Aquilegia oxysepala HOM05D007286 ORTHO05D008955 3.2e-16 90.1 314 33.1
Dinv20486 Davidia involucrata HOM05D007286 ORTHO05D008955 3.2e-16 90.1 70 71.4
Lalb_Chr19g0132561 Lupinus albus HOM05D007286 ORTHO05D008955 5.4e-16 89.4 291 35.4
Sc09g0004920 Simmondsia chinensis HOM05D007286 ORTHO05D008955 1.2e-15 88.2 297 33.3
FAN10G0279 Fragaria x ananassa HOM05D000139 ORTHO05D008955 3.9e-14 83.2 308 33.4
FAN01G1792 Fragaria x ananassa HOM05D007286 ORTHO05D008955 1.5e-13 81.3 303 34.0
Glyma.15G221400 Glycine max HOM05D007286 ORTHO05D008955 2.5e-13 80.5 285 34.4
FAN03G2081 Fragaria x ananassa HOM05D007286 ORTHO05D008955 4.3e-13 79.7 295 34.2
arahy.Tifrunner.gnm1.ann1.5NH7JH Arachis hypogaea HOM05D007286 ORTHO05D008955 4.8e-12 76.3 300 33.0
arahy.Tifrunner.gnm1.ann1.VD1ICN Arachis hypogaea HOM05D007286 ORTHO05D008955 1.8e-11 74.3 299 33.1
EL10Ac4g08793 Beta vulgaris HOM05D007286 ORTHO05D008955 1.8e-11 74.3 264 33.7
Gorai.009G301600 Gossypium raimondii HOM05D007286 ORTHO05D008955 2.4e-11 73.9 310 30.6
VMungo1127G0495 Vigna mungo HOM05D007286 ORTHO05D008955 3.1e-11 73.6 283 34.3
ATR0307G001 Amborella trichopoda HOM05D007286 ORTHO05D008955 4.0e-11 73.2 310 29.7
Glyma.08G227900 Glycine max HOM05D007286 ORTHO05D008955 6.9e-11 72.4 285 33.0
Gohir.A05G285500 Gossypium hirsutum HOM05D007286 ORTHO05D008955 6.9e-11 72.4 308 30.5
Gohir.D05G286600 Gossypium hirsutum HOM05D007286 ORTHO05D008955 9.0e-11 72.0 310 30.3
Atru.chr12.1143 Acer truncatum HOM05D007286 ORTHO05D008955 1.5e-10 71.2 292 32.9
Duzib128G1558 Durio zibethinus HOM05D000138 ORTHO05D008955 2.6e-10 70.5 256 32.8
Lj3g0009162 Lotus japonicus HOM05D007286 ORTHO05D008955 2.6e-10 70.5 251 33.5
Phvul.011G187500 Phaseolus vulgaris HOM05D007286 ORTHO05D008955 3.4e-10 70.1 285 33.7
Thecc.10G130100 Theobroma cacao HOM05D007286 ORTHO05D008955 9.9e-10 68.6 301 30.2
Psat4g141960 Pisum sativum HOM05D007286 ORTHO05D008955 1.3e-09 68.2 292 33.6
SEGI_40207 Sequoiadendron giganteum HOM05D005518 ORTHO05D001269 4.9e-09 66.2 312 31.7
Aqoxy386s001 Aquilegia oxysepala HOM05D007286 ORTHO05D008955 1.4e-08 64.7 282 29.8
Medtr8g044120 Medicago truncatula HOM05D007286 ORTHO05D008955 9.3e-08 62.0 257 33.1
Ca_12172_v3 Cicer arietinum L. HOM05D007286 ORTHO05D008955 1.2e-07 61.6 273 31.5


User provided reference genes

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