Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g21300 Coffea canephora HOM05D006244 ORTHO05D007401 3.8e-168 594.7 299 100.0
PGSC0003DMG400022864 Solanum tuberosum HOM05D006244 ORTHO05D007401 5.8e-100 368.2 308 60.4
SalBow3G2237 Salvia bowleyana HOM05D006244 ORTHO05D007401 4.9e-99 365.2 303 59.7
CSS0032343 Camellia sinensis var. sinensis HOM05D006244 ORTHO05D007401 1.1e-98 364.0 306 59.8
Solyc11g045210.2 Solanum lycopersicum HOM05D006244 ORTHO05D007401 1.1e-98 364.0 307 59.9
Sopen11g020640 Solanum pennellii HOM05D006244 ORTHO05D007401 1.9e-98 363.2 307 59.6
MSTRG.9759 Avicennia marina HOM05D006244 ORTHO05D007401 5.5e-98 361.7 302 60.3
CAN.G31.8 Capsicum annuum HOM05D006244 ORTHO05D007401 3.5e-97 359.0 308 59.4
Peaxi162Scf00126g00623 Petunia axillaris HOM05D006244 ORTHO05D007401 7.9e-97 357.8 308 60.7
Nitab4.5_0004117g0020 Nicotiana tabacum HOM05D006244 ORTHO05D007401 1.0e-96 357.5 306 60.5
Nitab4.5_0008822g0040 Nicotiana tabacum HOM05D006244 ORTHO05D007401 3.0e-96 355.9 306 60.5
Dinv22748 Davidia involucrata HOM05D006244 ORTHO05D007401 3.9e-96 355.5 294 61.6
QL05p011148 Quercus lobata HOM05D006244 ORTHO05D007401 3.9e-96 355.5 305 58.7
Gorai.011G141500 Gossypium raimondii HOM05D006244 ORTHO05D007401 1.1e-95 354.0 305 57.7
QL10p050150 Quercus lobata HOM05D006244 ORTHO05D007401 1.1e-95 354.0 305 58.0
Manes.04G043800 Manihot esculenta HOM05D006244 ORTHO05D007401 1.5e-95 353.6 307 58.3
Hma1.2p1_0324F.1_g125510 Hydrangea macrophylla HOM05D006244 ORTHO05D007401 2.5e-95 352.8 299 59.5
Migut.G01000 Erythranthe guttata HOM05D006244 ORTHO05D007401 1.3e-94 350.5 302 58.9
TAR636G2962 Trochodendron aralioides HOM05D006244 ORTHO05D007401 6.3e-94 348.2 306 56.9
Gohir.D10G128300 Gossypium hirsutum HOM05D006244 ORTHO05D007401 1.1e-93 347.4 305 56.7
Actinidia11297 Actinidia chinensis HOM05D006244 ORTHO05D007401 1.4e-93 347.1 299 58.5
Duzib151G0743 Durio zibethinus HOM05D006244 ORTHO05D007401 1.8e-93 346.7 305 57.4
Duzib175G0007 Durio zibethinus HOM05D006244 ORTHO05D007401 2.4e-93 346.3 305 57.4
Gohir.A10G138500 Gossypium hirsutum HOM05D006244 ORTHO05D007401 5.3e-93 345.1 305 56.7
Potri.017G028900 Populus trichocarpa HOM05D006244 ORTHO05D007401 9.0e-93 344.4 301 55.5
CiPaw.02G053900 Carya illinoinensis HOM05D006244 ORTHO05D007401 1.5e-92 343.6 306 57.5
Cfa020094 Carpinus fangiana HOM05D006244 ORTHO05D007401 4.5e-92 342.0 306 57.8
Sc19g0002910 Simmondsia chinensis HOM05D006244 ORTHO05D007401 1.3e-91 340.5 306 55.9
Ciclev10021382m.g Citrus clementina HOM05D006244 ORTHO05D007401 2.9e-91 339.3 300 57.3
Rhsim09G0025200 Rhododendron simsii HOM05D006244 ORTHO05D007401 1.9e-90 336.7 363 50.4
Hund03170 Selenicereus undatus HOM05D006244 ORTHO05D007401 3.2e-90 335.9 297 55.9
Sabra17G0017500 Salix brachista HOM05D006244 ORTHO05D007401 4.2e-90 335.5 301 54.5
COL.COLO4_12977 Corchorus olitorius HOM05D006244 ORTHO05D007401 5.5e-90 335.1 329 52.0
Aqoxy2G04144 Aquilegia oxysepala HOM05D006244 ORTHO05D007401 2.7e-89 332.8 297 57.9
Cpa.g.sc9.298 Carica papaya HOM05D006244 ORTHO05D007401 6.1e-89 331.6 299 57.5
Thecc.04G177000 Theobroma cacao HOM05D006244 ORTHO05D007401 6.1e-89 331.6 305 56.1
Lj3g0008901 Lotus japonicus HOM05D006244 ORTHO05D007401 1.0e-88 330.9 304 53.6
HanXRQChr11g0343701 Helianthus annuus HOM05D006244 ORTHO05D007401 1.8e-88 330.1 299 55.5
CANSAT78G1025 Cannabis sativa HOM05D006244 ORTHO05D007401 2.3e-88 329.7 305 54.4
AUR62023861 Chenopodium quinoa HOM05D006244 ORTHO05D007401 3.0e-88 329.3 303 55.4
PSO675G8539 Papaver somniferum HOM05D006244 ORTHO05D007401 3.9e-88 328.9 314 55.1
EL10Ac3g05981 Beta vulgaris HOM05D006244 ORTHO05D007401 5.1e-88 328.6 303 54.8
unitig_0.g2404 Utricularia gibba HOM05D006244 ORTHO05D007401 5.1e-88 328.6 299 54.5
ECA248G0275 Erigeron canadensis HOM05D006244 ORTHO05D007401 1.1e-87 327.4 299 54.8
Lsat_1_v5_gn_1_77900 Lactuca sativa HOM05D006244 ORTHO05D007401 1.9e-87 326.6 299 56.9
CsaV3_3G040880 Cucumis sativus L. HOM05D006244 ORTHO05D007401 2.5e-87 326.2 304 55.6
MELO3C009823.2 Cucumis melo HOM05D006244 ORTHO05D007401 3.3e-87 325.9 304 54.9
ClCG10G015550 Citrullus lanatus HOM05D006244 ORTHO05D007401 7.4e-87 324.7 303 54.8
TWI38G0370 Tripterygium wilfordii HOM05D006244 ORTHO05D007401 7.4e-87 324.7 298 54.7
Atru.chr4.1240 Acer truncatum HOM05D006244 ORTHO05D007401 9.7e-87 324.3 294 54.8
PSO732G0675 Papaver somniferum HOM05D006244 ORTHO05D007401 9.7e-87 324.3 304 54.6
Lalb_Chr22g0352091 Lupinus albus HOM05D006244 ORTHO05D007401 8.2e-86 321.2 305 54.1
THA.LOC104803749 Tarenaya hassleriana HOM05D006244 ORTHO05D007401 4.1e-85 318.9 306 54.2
GSVIVG01010791001 Vitis vinifera HOM05D006244 ORTHO05D007401 9.1e-85 317.8 296 55.7
RcHm_v2.0_Chr4g0406631 Rosa chinensis HOM05D006244 ORTHO05D007401 1.5e-84 317.0 304 52.6
AT3G59490 Arabidopsis thaliana HOM05D006244 ORTHO05D007401 7.7e-84 314.7 302 55.6
FAN07G2433 Fragaria x ananassa HOM05D006244 ORTHO05D007401 1.3e-83 313.9 304 51.0
Sp5g03670 Schrenkiella parvula HOM05D006244 ORTHO05D007401 1.3e-83 313.9 300 55.0
Prupe.1G196900 Prunus persica HOM05D006244 ORTHO05D007401 1.7e-83 313.5 305 53.8
Carub.0005s2622 Capsella rubella HOM05D006244 ORTHO05D007401 2.2e-83 313.2 299 55.5
MD04G1042500 Malus domestica HOM05D006244 ORTHO05D007401 1.1e-82 310.8 303 53.1
AUR62002326 Chenopodium quinoa HOM05D006244 ORTHO05D007401 1.9e-82 310.1 303 53.1
arahy.Tifrunner.gnm1.ann1.LPC3IP Arachis hypogaea HOM05D006244 ORTHO05D007401 2.5e-82 309.7 311 51.1
Thhalv10006132m.g Eutrema salsugineum HOM05D006244 ORTHO05D007401 2.5e-82 309.7 299 55.2
Eucgr.H00368 Eucalyptus grandis HOM05D006244 ORTHO05D007401 1.2e-81 307.4 299 52.5
Ah.07g202200 Amaranthus hybridus HOM05D006244 ORTHO05D007401 2.1e-81 306.6 302 50.7
Psat5g289400 Pisum sativum HOM05D006244 ORTHO05D007401 3.6e-81 305.8 299 52.2
TPR.G18836 Trifolium pratense HOM05D006244 ORTHO05D007401 3.6e-81 305.8 299 51.5
CARHR169870 Cardamine hirsuta HOM05D006244 ORTHO05D007401 6.1e-81 305.1 299 53.8
FvH4_4g10850 Fragaria vesca HOM05D006244 ORTHO05D007401 1.0e-80 304.3 296 50.7
FAN12G2117 Fragaria x ananassa HOM05D006244 ORTHO05D007401 1.0e-80 304.3 296 50.7
BraA04t15944Z Brassica rapa HOM05D006244 ORTHO05D007401 2.3e-80 303.1 299 53.5
AL5G41400 Arabidopsis lyrata HOM05D006244 ORTHO05D007401 5.1e-80 302.0 299 54.8
A04p02170 Brassica napus HOM05D006244 ORTHO05D007401 5.1e-80 302.0 299 53.8
BcaB02g08221 Brassica carinata HOM05D006244 ORTHO05D007401 6.7e-80 301.6 299 54.2
Glyma.15G029700 Glycine max HOM05D006244 ORTHO05D007401 1.5e-79 300.4 304 51.6
Aa31LG10G13810 Aethionema arabicum HOM05D006244 ORTHO05D007401 2.2e-78 296.6 299 52.5
Medtr2g098960 Medicago truncatula HOM05D006244 ORTHO05D007401 2.8e-78 296.2 299 50.2
C08p34500 Brassica napus HOM05D006244 ORTHO05D007401 3.7e-78 295.8 299 51.8
BolC8t51051H Brassica oleracea HOM05D006244 ORTHO05D007401 3.7e-78 295.8 299 51.8
BcaC07g40479 Brassica carinata HOM05D006244 ORTHO05D007401 8.2e-78 294.7 301 52.8
arahy.Tifrunner.gnm1.ann1.IE55HN Arachis hypogaea HOM05D006244 ORTHO05D007401 1.8e-77 293.5 299 49.8
MBI08_g33169_MAGBIO Magnolia biondii HOM05D006244 ORTHO05D007401 2.4e-77 293.1 278 54.3
BcaNung05942 Brassica carinata HOM05D006244 ORTHO05D007401 2.0e-76 290.0 288 53.8
A09p51770 Brassica napus HOM05D006244 ORTHO05D007401 3.5e-76 289.3 299 51.2
HPP92_001264 Vanilla planifolia HOM05D006244 ORTHO05D007401 7.7e-76 288.1 315 46.7
PGR142G0422 Punica granatum HOM05D006244 ORTHO05D007401 1.0e-75 287.7 306 49.0
HPP92_001248 Vanilla planifolia HOM05D006244 ORTHO05D007401 1.7e-75 287.0 315 46.3
BcaC07g40478 Brassica carinata HOM05D006244 ORTHO05D007401 5.0e-75 285.4 301 51.5
ATR0743G009 Amborella trichopoda HOM05D006244 ORTHO05D007401 1.1e-74 284.3 291 49.5
BraA09t40612Z Brassica rapa HOM05D006244 ORTHO05D007401 6.7e-72 275.0 296 49.7
Nn3g18564 Nelumbo nucifera HOM05D006244 ORTHO05D007401 2.0e-71 273.5 305 47.5
BolC4t24903H Brassica oleracea HOM05D006244 ORTHO05D007401 1.6e-68 263.8 299 48.8
VMungo1080G0762 Vigna mungo HOM05D006244 ORTHO05D007401 1.2e-65 254.2 261 49.0
DCAR_028445 Daucus carota HOM05D006244 ORTHO05D007401 4.1e-61 239.2 242 49.6
Lju337A6T20 Lonicera japonica HOM05D006244 ORTHO05D007401 7.7e-60 235.0 265 49.4
Sed0026513 Sechium edule HOM05D006244 ORTHO05D007401 1.6e-57 227.3 235 52.3
Phvul.005G153400 Phaseolus vulgaris HOM05D006244 ORTHO05D007401 2.1e-57 226.9 307 41.4
C04p33420 Brassica napus HOM05D006244 ORTHO05D007401 1.8e-56 223.8 299 46.8
Actinidia27645 Actinidia chinensis HOM05D006244 ORTHO05D007401 1.7e-54 217.2 207 53.1
vmacro00644 Vaccinium macrocarpon HOM05D006244 ORTHO05D007401 1.4e-48 197.6 201 53.7
FAN17G1708 Fragaria x ananassa HOM05D006244 ORTHO05D007401 1.8e-45 187.2 199 47.7
Zm00001eb318410 Zea mays HOM05D006244 ORTHO05D007401 1.6e-41 174.1 253 36.8
Cfa015178 Carpinus fangiana HOM05D006244 ORTHO05D007401 5.8e-39 165.6 171 50.9
vmacro00645 Vaccinium macrocarpon HOM05D006244 ORTHO05D007401 3.7e-38 162.9 157 54.8
MBI08_g09972_MAGBIO Magnolia biondii HOM05D006244 ORTHO05D007401 5.6e-34 149.1 194 44.8
Pp3c9_3600 Physcomitrium patens HOM05D006244 ORTHO05D007401 8.9e-32 141.7 314 29.9
Peaxi162Scf01193g00009 Petunia axillaris HOM05D006244 ORTHO05D007401 1.3e-27 127.9 142 50.7
Psat5g289440 Pisum sativum HOM05D006244 ORTHO05D007401 3.0e-27 126.7 121 51.2
Peaxi162Scf00066g02019 Petunia axillaris HOM05D006244 ORTHO05D007401 3.9e-27 126.3 187 41.7
Peaxi162Scf00533g00611 Petunia axillaris HOM05D006244 ORTHO05D007401 5.1e-27 125.9 142 50.7
C04p32460 Brassica napus HOM05D006244 ORTHO05D007401 8.9e-24 115.2 213 33.8
Peaxi162Scf00272g00041 Petunia axillaris HOM05D006244 ORTHO05D007401 2.0e-23 114.0 120 51.7
Os09g0515300 Oryza sativa ssp. japonica HOM05D006244 ORTHO05D007401 2.6e-23 113.6 117 47.0
Peaxi162Scf00627g00001 Petunia axillaris HOM05D006244 ORTHO05D007401 2.9e-22 110.2 120 50.0
Peaxi162Scf00404g00815 Petunia axillaris HOM05D006244 ORTHO05D007401 1.2e-20 104.8 145 43.4
Lju337A6G22 Lonicera japonica HOM05D006244 ORTHO05D007401 6.0e-20 102.4 68 70.6
Lj6C77T3 Lonicera japonica HOM05D006244 ORTHO05D007401 7.8e-20 102.1 67 73.1
Lj6A77G23 Lonicera japonica HOM05D006244 ORTHO05D007401 1.0e-19 101.7 96 55.2
SMO364G0376 Selaginella moellendorffii HOM05D006244 ORTHO05D007401 3.0e-19 100.1 294 26.5
Sabra17G0062000 Salix brachista HOM05D006244 ORTHO05D007401 1.1e-16 91.7 120 42.5
BcaC02g10138 Brassica carinata HOM05D006244 ORTHO05D007401 2.0e-15 87.4 243 32.9
Glyma.13G344600 Glycine max HOM05D006244 ORTHO05D007401 4.4e-15 86.3 63 61.9
Zm00001eb239190 Zea mays HOM05D001072 ORTHO05D007401 4.6e-12 76.3 78 47.4
AagrBONN_evm.TU.Sc2ySwM_228.3866 Anthoceros agrestis HOM05D006244 ORTHO05D007401 2.3e-11 73.9 153 31.4
Peaxi162Scf00255g00049 Petunia axillaris HOM05D006244 ORTHO05D007401 1.9e-10 70.9 85 48.2


User provided reference genes

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