Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g21180 Coffea canephora HOM05D004063 ORTHO05D005326 5.6e-40 167.2 84 100.0
Cc02_g33840 Coffea canephora HOM05D004063 ORTHO05D005326 3.0e-33 144.8 73 100.0
Cc00_g23370 Coffea canephora HOM05D004063 ORTHO05D005326 3.9e-33 144.4 73 98.6
Dinv05531 Davidia involucrata HOM05D004063 ORTHO05D005326 6.2e-31 137.1 73 93.2
Hma1.2p1_0157F.1_g069400 Hydrangea macrophylla HOM05D004063 ORTHO05D005326 1.4e-30 136.0 73 91.8
THA.LOC104809761 Tarenaya hassleriana HOM05D004063 ORTHO05D005326 1.8e-30 135.6 73 91.8
DCAR_003678 Daucus carota HOM05D004063 ORTHO05D005326 3.1e-30 134.8 73 90.4
Oeu007480.1 Olea europaea HOM05D004063 ORTHO05D005326 3.1e-30 134.8 73 91.8
AL1G33510 Arabidopsis lyrata HOM05D004063 ORTHO05D005326 4.0e-30 134.4 73 90.4
BcaB07g32056 Brassica carinata HOM05D004063 ORTHO05D005326 4.0e-30 134.4 73 90.4
BcaC05g25963 Brassica carinata HOM05D004063 ORTHO05D005326 4.0e-30 134.4 73 90.4
A07p15610 Brassica napus HOM05D004063 ORTHO05D005326 4.0e-30 134.4 73 90.4
C05p19140 Brassica napus HOM05D004063 ORTHO05D005326 4.0e-30 134.4 73 90.4
C07p22960 Brassica napus HOM05D004063 ORTHO05D005326 4.0e-30 134.4 73 90.4
BolC5t30614H Brassica oleracea HOM05D004063 ORTHO05D005326 4.0e-30 134.4 73 90.4
BolC7t42835H Brassica oleracea HOM05D004063 ORTHO05D005326 4.0e-30 134.4 73 90.4
CiPaw.07G138500 Carya illinoinensis HOM05D004063 ORTHO05D005326 4.0e-30 134.4 73 90.4
Thhalv10008599m.g Eutrema salsugineum HOM05D004063 ORTHO05D005326 4.0e-30 134.4 73 90.4
BcaB03g14313 Brassica carinata HOM05D004063 ORTHO05D005326 5.2e-30 134.0 73 89.0
BraA07t29300Z Brassica rapa HOM05D004063 ORTHO05D005326 5.2e-30 134.0 73 90.4
CSS0047740 Camellia sinensis var. sinensis HOM05D004063 ORTHO05D005326 5.2e-30 134.0 73 90.4
CANSAT21G0854 Cannabis sativa HOM05D004063 ORTHO05D005326 5.2e-30 134.0 73 90.4
Dinv31945 Davidia involucrata HOM05D004063 ORTHO05D005326 5.2e-30 134.0 73 90.4
Migut.C00386 Erythranthe guttata HOM05D004063 ORTHO05D005326 5.2e-30 134.0 73 90.4
HanXRQChr15g0492711 Helianthus annuus HOM05D004063 ORTHO05D005326 5.2e-30 134.0 73 89.0
SalBow5G0394 Salvia bowleyana HOM05D004063 ORTHO05D005326 5.2e-30 134.0 73 90.4
SalBow7G2995 Salvia bowleyana HOM05D004063 ORTHO05D005326 5.2e-30 134.0 73 90.4
MSTRG.978 Avicennia marina HOM05D004063 ORTHO05D005326 6.8e-30 133.7 73 90.4
HanXRQChr05g0144881 Helianthus annuus HOM05D004063 ORTHO05D005326 6.8e-30 133.7 73 89.0
Lsat_1_v5_gn_9_45181 Lactuca sativa HOM05D004063 ORTHO05D005326 6.8e-30 133.7 73 89.0
Oeu000693.1 Olea europaea HOM05D004063 ORTHO05D005326 6.8e-30 133.7 73 90.4
TPR.G16276 Trifolium pratense HOM05D004063 ORTHO05D005326 6.8e-30 133.7 73 89.0
TPR.G34273 Trifolium pratense HOM05D004063 ORTHO05D005326 6.8e-30 133.7 73 89.0
Gohir.A01G105500 Gossypium hirsutum HOM05D004063 ORTHO05D005326 8.9e-30 133.3 73 89.0
Gorai.002G116900 Gossypium raimondii HOM05D004063 ORTHO05D005326 8.9e-30 133.3 73 89.0
PSO063G2900 Papaver somniferum HOM05D004063 ORTHO05D005326 8.9e-30 133.3 73 89.0
PSO832G0952 Papaver somniferum HOM05D004063 ORTHO05D005326 8.9e-30 133.3 73 89.0
SalBow5G0233 Salvia bowleyana HOM05D004063 ORTHO05D005326 8.9e-30 133.3 73 90.4
SalBow5G1556 Salvia bowleyana HOM05D004063 ORTHO05D005326 8.9e-30 133.3 73 90.4
SalBow5G2247 Salvia bowleyana HOM05D004063 ORTHO05D005326 8.9e-30 133.3 73 90.4
Atru.chr13.138 Acer truncatum HOM05D004063 ORTHO05D005326 1.2e-29 132.9 73 89.0
AT1G20575 Arabidopsis thaliana HOM05D004063 ORTHO05D005326 1.2e-29 132.9 73 89.0
CARHR021040 Cardamine hirsuta HOM05D004063 ORTHO05D005326 1.2e-29 132.9 73 89.0
Gohir.D01G091800 Gossypium hirsutum HOM05D004063 ORTHO05D005326 1.2e-29 132.9 73 89.0
COL.COLO4_05219 Corchorus olitorius HOM05D004063 ORTHO05D005326 1.5e-29 132.5 73 90.4
COL.COLO4_38533 Corchorus olitorius HOM05D004063 ORTHO05D005326 1.5e-29 132.5 73 90.4
Duzib093G1691 Durio zibethinus HOM05D004063 ORTHO05D005326 1.5e-29 132.5 73 89.0
Duzib116G0298 Durio zibethinus HOM05D004063 ORTHO05D005326 1.5e-29 132.5 73 90.4
Psat7g118640 Pisum sativum HOM05D004063 ORTHO05D005326 1.5e-29 132.5 73 87.7
Thecc.08G059500 Theobroma cacao HOM05D004063 ORTHO05D005326 1.5e-29 132.5 73 90.4
TWI36G0802 Tripterygium wilfordii HOM05D004063 ORTHO05D005326 1.5e-29 132.5 73 89.0
ATR0693G211 Amborella trichopoda HOM05D004063 ORTHO05D005326 2.0e-29 132.1 73 89.0
AUR62019619 Chenopodium quinoa HOM05D004063 ORTHO05D005326 2.0e-29 132.1 73 89.0
AUR62039603 Chenopodium quinoa HOM05D004063 ORTHO05D005326 2.0e-29 132.1 73 89.0
Ciclev10003501m.g Citrus clementina HOM05D004063 ORTHO05D005326 2.0e-29 132.1 73 89.0
unitig_22.g5884 Utricularia gibba HOM05D004063 ORTHO05D005326 2.0e-29 132.1 73 87.7
Ca_26048_v3 Cicer arietinum L. HOM05D004063 ORTHO05D005326 2.6e-29 131.7 73 87.7
Eucgr.F01769 Eucalyptus grandis HOM05D004063 ORTHO05D005326 3.4e-29 131.3 73 89.0
Sp1g18280 Schrenkiella parvula HOM05D004063 ORTHO05D005326 3.4e-29 131.3 73 89.0
Sopen04g035990 Solanum pennellii HOM05D004063 ORTHO05D005326 3.4e-29 131.3 73 87.7
Carub.0001s2006 Capsella rubella HOM05D004063 ORTHO05D005326 4.4e-29 131.0 73 87.7
Os03g0824400 Oryza sativa ssp. japonica HOM05D004063 ORTHO05D005326 4.4e-29 131.0 73 86.3
EL10Ac4g08397 Beta vulgaris HOM05D004063 ORTHO05D005326 5.8e-29 130.6 73 87.7
Haze_22784 Corylus avellana HOM05D004063 ORTHO05D005326 5.8e-29 130.6 73 87.7
Gohir.D02G100300 Gossypium hirsutum HOM05D004063 ORTHO05D005326 5.8e-29 130.6 73 87.7
Gorai.005G113700 Gossypium raimondii HOM05D004063 ORTHO05D005326 5.8e-29 130.6 73 87.7
QL02p014238 Quercus lobata HOM05D004063 ORTHO05D005326 5.8e-29 130.6 72 90.3
arahy.Tifrunner.gnm1.ann1.T45K83 Arachis hypogaea HOM05D004063 ORTHO05D005326 7.5e-29 130.2 73 87.7
arahy.Tifrunner.gnm1.ann1.YJK3BU Arachis hypogaea HOM05D004063 ORTHO05D005326 7.5e-29 130.2 73 87.7
CAN.G311.117 Capsicum annuum HOM05D004063 ORTHO05D005326 7.5e-29 130.2 73 86.3
Glyma.07G204400 Glycine max HOM05D004063 ORTHO05D005326 7.5e-29 130.2 73 87.7
Glyma.13G171700 Glycine max HOM05D004063 ORTHO05D005326 7.5e-29 130.2 73 87.7
Lalb_Chr05g0218721 Lupinus albus HOM05D004063 ORTHO05D005326 7.5e-29 130.2 73 87.7
MBI08_g37091_MAGBIO Magnolia biondii HOM05D004063 ORTHO05D005326 7.5e-29 130.2 73 89.0
MD06G1125000 Malus domestica HOM05D004063 ORTHO05D005326 7.5e-29 130.2 73 86.3
Phvul.003G057700 Phaseolus vulgaris HOM05D004063 ORTHO05D005326 7.5e-29 130.2 73 87.7
Rhsim01G0045200 Rhododendron simsii HOM05D004063 ORTHO05D005326 7.5e-29 130.2 73 86.3
RhsimUnG0172300 Rhododendron simsii HOM05D004063 ORTHO05D005326 7.5e-29 130.2 73 86.3
Hund14546 Selenicereus undatus HOM05D004063 ORTHO05D005326 7.5e-29 130.2 73 89.0
Aqoxy5G01076 Aquilegia oxysepala HOM05D004063 ORTHO05D005326 9.8e-29 129.8 73 89.0
Peaxi162Scf00893g00009 Petunia axillaris HOM05D004063 ORTHO05D005326 9.8e-29 129.8 73 86.3
RcHm_v2.0_Chr7g0187901 Rosa chinensis HOM05D004063 ORTHO05D005326 9.8e-29 129.8 73 87.7
Solyc04g082390.3 Solanum lycopersicum HOM05D004063 ORTHO05D005326 9.8e-29 129.8 73 86.3
PGSC0003DMG400009980 Solanum tuberosum HOM05D004063 ORTHO05D005326 9.8e-29 129.8 73 86.3
Gohir.A02G084400 Gossypium hirsutum HOM05D004063 ORTHO05D005326 1.3e-28 129.4 73 86.3
Prupe.5G135600 Prunus persica HOM05D004063 ORTHO05D005326 1.3e-28 129.4 72 87.5
SGA_v2.0_scaffold82G26227 Striga asiatica HOM05D004063 ORTHO05D005326 1.3e-28 129.4 73 86.3
Zm00001eb062940 Zea mays HOM05D004063 ORTHO05D005326 1.3e-28 129.4 73 86.3
Medtr2g097220 Medicago truncatula HOM05D004063 ORTHO05D005326 1.7e-28 129.0 73 86.3
FvH4_5g10320 Fragaria vesca HOM05D004063 ORTHO05D005326 2.2e-28 128.6 73 86.3
FAN04G0504 Fragaria x ananassa HOM05D004063 ORTHO05D005326 2.2e-28 128.6 73 86.3
FAN08G1355 Fragaria x ananassa HOM05D004063 ORTHO05D005326 2.2e-28 128.6 73 86.3
FAN13G1863 Fragaria x ananassa HOM05D004063 ORTHO05D005326 2.2e-28 128.6 73 86.3
FAN18G2216 Fragaria x ananassa HOM05D004063 ORTHO05D005326 2.2e-28 128.6 73 86.3
Manes.10G039800 Manihot esculenta HOM05D004063 ORTHO05D005326 2.2e-28 128.6 73 86.3
PGR083G1742 Punica granatum HOM05D004063 ORTHO05D005326 2.2e-28 128.6 73 87.7
Lj4g0024263 Lotus japonicus HOM05D004063 ORTHO05D005326 2.9e-28 128.3 73 83.6
Lalb_Chr16g0384201 Lupinus albus HOM05D004063 ORTHO05D005326 2.9e-28 128.3 73 84.9
Sed0026987 Sechium edule HOM05D004063 ORTHO05D005326 2.9e-28 128.3 73 86.3
arahy.Tifrunner.gnm1.ann1.T0MTDZ Arachis hypogaea HOM05D004063 ORTHO05D005326 3.7e-28 127.9 71 87.3
MELO3C017019.2 Cucumis melo HOM05D004063 ORTHO05D005326 3.7e-28 127.9 73 86.3
CsaV3_4G037210 Cucumis sativus L. HOM05D004063 ORTHO05D005326 3.7e-28 127.9 73 86.3
vmacro17869 Vaccinium macrocarpon HOM05D004063 ORTHO05D005326 3.7e-28 127.9 73 86.3
Cfa000095 Carpinus fangiana HOM05D004063 ORTHO05D005326 4.9e-28 127.5 68 91.2
ClCG11G018680 Citrullus lanatus HOM05D004063 ORTHO05D005326 4.9e-28 127.5 73 84.9
Potri.002G010300 Populus trichocarpa HOM05D004063 ORTHO05D005326 6.4e-28 127.1 73 86.3
Sabra02G0007700 Salix brachista HOM05D004063 ORTHO05D005326 6.4e-28 127.1 73 86.3
Sabra05G0194100 Salix brachista HOM05D001348 ORTHO05D002788 6.4e-28 127.1 73 86.3
HPP92_006203 Vanilla planifolia HOM05D004063 ORTHO05D005326 6.4e-28 127.1 73 87.7
Potri.005G250900 Populus trichocarpa HOM05D004063 ORTHO05D005326 8.3e-28 126.7 73 86.3
arahy.Tifrunner.gnm1.ann1.G5WY8I Arachis hypogaea HOM05D001447 ORTHO05D005061 2.4e-27 125.2 69 88.4
GSVIVG01008672001 Vitis vinifera HOM05D004063 ORTHO05D005326 4.1e-27 124.4 73 83.6
Actinidia37921 Actinidia chinensis HOM05D004063 ORTHO05D005326 5.4e-27 124.0 71 87.3
SEGI_30145 Sequoiadendron giganteum HOM05D004063 ORTHO05D005326 7.0e-27 123.6 73 82.2
A06p16570 Brassica napus HOM05D004063 ORTHO05D005326 9.2e-27 123.2 74 83.8
Lj4A11G65 Lonicera japonica HOM05D004063 ORTHO05D005326 1.6e-26 122.5 96 69.8
BraA06t24763Z Brassica rapa HOM05D004063 ORTHO05D005326 3.5e-26 121.3 73 83.6
Mapoly0048s0015 Marchantia polymorpha HOM05D004063 ORTHO05D005326 4.6e-26 120.9 73 80.8
Ah.04g164080 Amaranthus hybridus HOM05D004150 ORTHO05D005087 1.3e-25 119.4 65 89.2
SMO147G0209 Selaginella moellendorffii HOM05D004063 ORTHO05D005326 1.5e-24 115.9 73 76.7
Pp3c13_6200 Physcomitrium patens HOM05D004063 ORTHO05D005326 3.3e-24 114.8 73 76.7
Medtr4g087885 Medicago truncatula HOM05D004063 ORTHO05D005326 4.3e-24 114.4 105 60.0
CDE05G0316 Ceratophyllum demersum HOM05D004063 ORTHO05D005326 4.0e-22 107.8 60 86.7
MCO11G313 Micromonas commoda HOM05D004063 ORTHO05D005326 4.0e-22 107.8 71 73.2
MBI08_g41353_MAGBIO Magnolia biondii HOM05D004063 ORTHO05D005326 1.5e-21 105.9 73 78.1
CBR_g50625 Chara braunii HOM05D004063 ORTHO05D005326 3.4e-21 104.8 73 69.9
PRCOL_00004250 Prasinoderma coloniale HOM05D004063 ORTHO05D005326 9.9e-21 103.2 73 68.5
ECA232G2837 Erigeron canadensis HOM05D004063 ORTHO05D005326 4.9e-20 100.9 56 83.9
CBR_g19920 Chara braunii HOM05D004063 ORTHO05D005326 3.2e-19 98.2 71 66.2
Nitab4.5_0000588g0070 Nicotiana tabacum HOM05D004063 ORTHO05D005326 2.5e-16 88.6 174 36.8
CSS0027821 Camellia sinensis var. sinensis HOM05D004063 ORTHO05D005326 7.3e-16 87.0 47 89.4
Haze_27556 Corylus avellana HOM05D004063 ORTHO05D005326 1.1e-14 83.2 68 60.3
Cfa026140 Carpinus fangiana HOM05D004063 ORTHO05D005326 1.8e-14 82.4 68 55.9
Cre03.g150950 Chlamydomonas reinhardtii HOM05D004063 ORTHO05D005326 8.9e-14 80.1 70 54.3
CDE05G0379 Ceratophyllum demersum HOM05D004063 ORTHO05D005326 2.0e-13 79.0 73 63.0
Aa31LG7G4830 Aethionema arabicum HOM05D004063 ORTHO05D005326 9.9e-13 76.6 73 60.3
Haze_06929 Corylus avellana HOM05D004063 ORTHO05D005326 5.4e-11 70.9 39 84.6
Haze_06936 Corylus avellana HOM05D004063 ORTHO05D005326 5.4e-11 70.9 39 84.6
SalBow5G1320 Salvia bowleyana HOM05D004063 ORTHO05D005326 7.1e-11 70.5 41 82.9
SalBow5G3904 Salvia bowleyana HOM05D004063 ORTHO05D005326 7.1e-11 70.5 39 87.2
SalBow5G4311 Salvia bowleyana HOM05D004063 ORTHO05D005326 9.2e-11 70.1 38 86.8
Cpa.g.c43717 Carica papaya HOM05D004063 ORTHO05D005326 1.2e-10 69.7 39 82.1
arahy.Tifrunner.gnm1.ann1.WN1LH4 Arachis hypogaea HOM05D004063 ORTHO05D005326 2.1e-10 68.9 41 75.6
arahy.Tifrunner.gnm1.ann1.Z2LGXF Arachis hypogaea HOM05D004063 ORTHO05D013367 4.6e-10 67.8 41 75.6
SalBow5G2049 Salvia bowleyana HOM05D004063 ORTHO05D005326 4.6e-10 67.8 49 71.4
arahy.Tifrunner.gnm1.ann1.ND9UIP Arachis hypogaea HOM05D004063 ORTHO05D013367 7.8e-10 67.0 41 75.6
arahy.Tifrunner.gnm1.ann1.SDYE8W Arachis hypogaea HOM05D004063 ORTHO05D013367 7.8e-10 67.0 41 75.6
TAR376G1187 Trochodendron aralioides HOM05D004063 ORTHO05D005326 1.3e-09 66.2 39 82.1
arahy.Tifrunner.gnm1.ann1.RK3M4K Arachis hypogaea HOM05D004063 ORTHO05D001221 1.7e-09 65.9 41 73.2
Nn6g31864 Nelumbo nucifera HOM05D004063 ORTHO05D005326 1.7e-09 65.9 49 65.3
Rhsim06G0007000 Rhododendron simsii HOM05D004063 ORTHO05D005326 1.7e-09 65.9 73 54.8
arahy.Tifrunner.gnm1.ann1.T1UNZ1 Arachis hypogaea HOM05D004063 ORTHO05D005326 5.1e-09 64.3 37 75.7
vmacro04405 Vaccinium macrocarpon HOM05D004063 ORTHO05D005326 6.6e-09 63.9 43 69.8
Cpa.g.sc801.1 Carica papaya HOM05D004063 ORTHO05D005326 1.9e-08 62.4 35 85.7


User provided reference genes

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