Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g21170 Coffea canephora HOM05D004063 ORTHO05D005326 1.4e-40 169.1 78 100.0
Cc00_g23370 Coffea canephora HOM05D004063 ORTHO05D005326 1.4e-24 115.9 55 96.4
DCAR_003678 Daucus carota HOM05D004063 ORTHO05D005326 6.8e-24 113.6 55 94.5
HanXRQChr05g0144881 Helianthus annuus HOM05D004063 ORTHO05D005326 1.5e-23 112.5 55 92.7
CSS0047740 Camellia sinensis var. sinensis HOM05D004063 ORTHO05D005326 3.4e-23 111.3 55 90.9
Sc15g0004420 Simmondsia chinensis HOM05D004063 ORTHO05D005326 3.4e-23 111.3 55 90.9
Glyma.07G204400 Glycine max HOM05D004063 ORTHO05D005326 5.7e-23 110.5 55 89.1
Lj4A11G65 Lonicera japonica HOM05D004063 ORTHO05D005326 5.7e-23 110.5 55 90.9
PSO832G0952 Papaver somniferum HOM05D004063 ORTHO05D005326 7.5e-23 110.2 55 90.9
Actinidia37921 Actinidia chinensis HOM05D004063 ORTHO05D005326 9.8e-23 109.8 55 89.1
Hund14546 Selenicereus undatus HOM05D004063 ORTHO05D005326 9.8e-23 109.8 55 90.9
Dinv05531 Davidia involucrata HOM05D004063 ORTHO05D005326 1.3e-22 109.4 55 90.9
HanXRQChr15g0492711 Helianthus annuus HOM05D004063 ORTHO05D005326 1.3e-22 109.4 55 90.9
ClCG11G018680 Citrullus lanatus HOM05D004063 ORTHO05D005326 1.7e-22 109.0 60 80.0
PSO063G2900 Papaver somniferum HOM05D004063 ORTHO05D005326 1.7e-22 109.0 55 89.1
Phvul.003G057700 Phaseolus vulgaris HOM05D004063 ORTHO05D005326 1.7e-22 109.0 55 87.3
CAN.G311.117 Capsicum annuum HOM05D004063 ORTHO05D005326 2.2e-22 108.6 55 89.1
COL.COLO4_38533 Corchorus olitorius HOM05D004063 ORTHO05D005326 2.2e-22 108.6 55 89.1
Haze_22784 Corylus avellana HOM05D004063 ORTHO05D005326 2.2e-22 108.6 55 89.1
Dinv31945 Davidia involucrata HOM05D004063 ORTHO05D005326 2.2e-22 108.6 55 89.1
Duzib093G1691 Durio zibethinus HOM05D004063 ORTHO05D005326 2.2e-22 108.6 55 89.1
Glyma.13G171700 Glycine max HOM05D004063 ORTHO05D005326 2.2e-22 108.6 55 87.3
Gohir.A01G105500 Gossypium hirsutum HOM05D004063 ORTHO05D005326 2.2e-22 108.6 55 89.1
Gorai.002G116900 Gossypium raimondii HOM05D004063 ORTHO05D005326 2.2e-22 108.6 55 89.1
Hma1.2p1_0157F.1_g069400 Hydrangea macrophylla HOM05D004063 ORTHO05D005326 2.2e-22 108.6 55 89.1
Lj4g0024263 Lotus japonicus HOM05D004063 ORTHO05D005326 2.2e-22 108.6 55 87.3
Lalb_Chr16g0384201 Lupinus albus HOM05D004063 ORTHO05D005326 2.2e-22 108.6 55 85.5
Manes.10G039800 Manihot esculenta HOM05D004063 ORTHO05D005326 2.2e-22 108.6 55 89.1
Medtr2g097220 Medicago truncatula HOM05D004063 ORTHO05D005326 2.2e-22 108.6 55 85.5
Oeu007480.1 Olea europaea HOM05D004063 ORTHO05D005326 2.2e-22 108.6 55 89.1
Solyc04g082390.3 Solanum lycopersicum HOM05D004063 ORTHO05D005326 2.2e-22 108.6 55 89.1
Sopen04g035990 Solanum pennellii HOM05D004063 ORTHO05D005326 2.2e-22 108.6 55 89.1
PGSC0003DMG400009980 Solanum tuberosum HOM05D004063 ORTHO05D005326 2.2e-22 108.6 55 89.1
TPR.G34273 Trifolium pratense HOM05D004063 ORTHO05D005326 2.2e-22 108.6 55 85.5
CSS0027821 Camellia sinensis var. sinensis HOM05D004063 ORTHO05D005326 2.8e-22 108.2 55 89.1
CiPaw.07G138500 Carya illinoinensis HOM05D004063 ORTHO05D005326 2.8e-22 108.2 55 89.1
Haze_06929 Corylus avellana HOM05D004063 ORTHO05D005326 2.8e-22 108.2 55 89.1
Haze_06936 Corylus avellana HOM05D004063 ORTHO05D005326 2.8e-22 108.2 55 89.1
Peaxi162Scf00893g00009 Petunia axillaris HOM05D004063 ORTHO05D005326 2.8e-22 108.2 55 89.1
Rhsim01G0045200 Rhododendron simsii HOM05D004063 ORTHO05D005326 2.8e-22 108.2 55 89.1
RhsimUnG0172300 Rhododendron simsii HOM05D004063 ORTHO05D005326 2.8e-22 108.2 55 89.1
SalBow7G2995 Salvia bowleyana HOM05D004063 ORTHO05D005326 2.8e-22 108.2 55 87.3
GSVIVG01008672001 Vitis vinifera HOM05D004063 ORTHO05D005326 2.8e-22 108.2 55 89.1
Zm00001eb062940 Zea mays HOM05D004063 ORTHO05D005326 2.8e-22 108.2 70 71.4
EL10Ac4g08397 Beta vulgaris HOM05D004063 ORTHO05D005326 3.7e-22 107.8 54 90.7
Cfa000095 Carpinus fangiana HOM05D004063 ORTHO05D005326 3.7e-22 107.8 55 87.3
Lsat_1_v5_gn_9_45181 Lactuca sativa HOM05D004063 ORTHO05D005326 3.7e-22 107.8 55 87.3
Medtr4g087885 Medicago truncatula HOM05D004063 ORTHO05D005326 3.7e-22 107.8 55 83.6
QL02p014238 Quercus lobata HOM05D004063 ORTHO05D005326 3.7e-22 107.8 55 85.5
CDE05G0316 Ceratophyllum demersum HOM05D004063 ORTHO05D005326 4.9e-22 107.5 55 87.3
CDE05G0379 Ceratophyllum demersum HOM05D004063 ORTHO05D005326 4.9e-22 107.5 55 87.3
FAN04G0504 Fragaria x ananassa HOM05D004063 ORTHO05D005326 4.9e-22 107.5 55 89.1
FAN08G1355 Fragaria x ananassa HOM05D004063 ORTHO05D005326 4.9e-22 107.5 55 89.1
FAN13G1863 Fragaria x ananassa HOM05D004063 ORTHO05D005326 4.9e-22 107.5 55 89.1
Gohir.A02G084400 Gossypium hirsutum HOM05D004063 ORTHO05D005326 4.9e-22 107.5 55 89.1
MD06G1125000 Malus domestica HOM05D004063 ORTHO05D005326 4.9e-22 107.5 55 89.1
Os03g0824400 Oryza sativa ssp. japonica HOM05D004063 ORTHO05D005326 4.9e-22 107.5 55 85.5
Psat7g118640 Pisum sativum HOM05D004063 ORTHO05D005326 4.9e-22 107.5 55 83.6
Prupe.5G135600 Prunus persica HOM05D004063 ORTHO05D005326 4.9e-22 107.5 55 89.1
SGA_v2.0_scaffold82G26227 Striga asiatica HOM05D004063 ORTHO05D005326 4.9e-22 107.5 55 87.3
ECA232G2837 Erigeron canadensis HOM05D004063 ORTHO05D005326 6.3e-22 107.1 54 88.9
Gohir.D01G091800 Gossypium hirsutum HOM05D004063 ORTHO05D005326 6.3e-22 107.1 55 87.3
Lalb_Chr05g0218721 Lupinus albus HOM05D004063 ORTHO05D005326 6.3e-22 107.1 55 85.5
Psat5g286640 Pisum sativum HOM05D004063 ORTHO05D005326 6.3e-22 107.1 55 83.6
TWI36G0802 Tripterygium wilfordii HOM05D004063 ORTHO05D005326 6.3e-22 107.1 55 85.5
Aqoxy5G01076 Aquilegia oxysepala HOM05D004063 ORTHO05D005326 8.3e-22 106.7 55 85.5
AUR62039603 Chenopodium quinoa HOM05D004063 ORTHO05D005326 8.3e-22 106.7 54 88.9
FAN18G2216 Fragaria x ananassa HOM05D004063 ORTHO05D005326 8.3e-22 106.7 55 87.3
Oeu000693.1 Olea europaea HOM05D004063 ORTHO05D005326 8.3e-22 106.7 55 87.3
PGR083G1742 Punica granatum HOM05D004063 ORTHO05D005326 8.3e-22 106.7 55 89.1
Ca_26048_v3 Cicer arietinum L. HOM05D004063 ORTHO05D005326 1.1e-21 106.3 55 83.6
FvH4_5g10320 Fragaria vesca HOM05D004063 ORTHO05D005326 1.1e-21 106.3 55 87.3
Sed0026987 Sechium edule HOM05D004063 ORTHO05D005326 1.1e-21 106.3 55 83.6
TPR.G16276 Trifolium pratense HOM05D004063 ORTHO05D005326 1.1e-21 106.3 55 85.5
unitig_22.g5884 Utricularia gibba HOM05D004063 ORTHO05D005326 1.1e-21 106.3 55 87.3
arahy.Tifrunner.gnm1.ann1.G5WY8I Arachis hypogaea HOM05D001447 ORTHO05D005061 1.4e-21 105.9 55 87.3
arahy.Tifrunner.gnm1.ann1.T0MTDZ Arachis hypogaea HOM05D004063 ORTHO05D005326 1.4e-21 105.9 55 87.3
arahy.Tifrunner.gnm1.ann1.T45K83 Arachis hypogaea HOM05D004063 ORTHO05D005326 1.4e-21 105.9 55 87.3
arahy.Tifrunner.gnm1.ann1.YJK3BU Arachis hypogaea HOM05D004063 ORTHO05D005326 1.4e-21 105.9 55 87.3
MELO3C017019.2 Cucumis melo HOM05D004063 ORTHO05D005326 1.4e-21 105.9 55 83.6
Eucgr.F01769 Eucalyptus grandis HOM05D004063 ORTHO05D005326 1.4e-21 105.9 55 87.3
Gohir.D02G100300 Gossypium hirsutum HOM05D004063 ORTHO05D005326 1.4e-21 105.9 55 89.1
Gorai.005G113700 Gossypium raimondii HOM05D004063 ORTHO05D005326 1.4e-21 105.9 55 89.1
SalBow5G0233 Salvia bowleyana HOM05D004063 ORTHO05D005326 1.4e-21 105.9 55 85.5
SalBow5G1556 Salvia bowleyana HOM05D004063 ORTHO05D005326 1.4e-21 105.9 55 85.5
SalBow5G2247 Salvia bowleyana HOM05D004063 ORTHO05D005326 1.4e-21 105.9 55 85.5
Atru.chr13.138 Acer truncatum HOM05D004063 ORTHO05D005326 1.8e-21 105.5 55 87.3
Nn6g31864 Nelumbo nucifera HOM05D004063 ORTHO05D005326 1.8e-21 105.5 55 87.3
Potri.002G010300 Populus trichocarpa HOM05D004063 ORTHO05D005326 1.8e-21 105.5 55 87.3
Potri.005G250900 Populus trichocarpa HOM05D004063 ORTHO05D005326 1.8e-21 105.5 55 87.3
Sabra05G0194100 Salix brachista HOM05D001348 ORTHO05D002788 1.8e-21 105.5 55 87.3
Thecc.08G059500 Theobroma cacao HOM05D004063 ORTHO05D005326 1.8e-21 105.5 55 85.5
AUR62019619 Chenopodium quinoa HOM05D004063 ORTHO05D005326 2.4e-21 105.1 54 87.0
Nitab4.5_0000588g0070 Nicotiana tabacum HOM05D004063 ORTHO05D005326 2.4e-21 105.1 55 87.3
CsaV3_4G037210 Cucumis sativus L. HOM05D004063 ORTHO05D005326 3.1e-21 104.8 55 81.8
THA.LOC104809761 Tarenaya hassleriana HOM05D004063 ORTHO05D005326 3.1e-21 104.8 55 87.3
Duzib116G0298 Durio zibethinus HOM05D004063 ORTHO05D005326 4.1e-21 104.4 55 87.3
RcHm_v2.0_Chr7g0187901 Rosa chinensis HOM05D004063 ORTHO05D005326 4.1e-21 104.4 55 87.3
ATR0693G211 Amborella trichopoda HOM05D004063 ORTHO05D005326 5.4e-21 104.0 55 83.6
Migut.C00386 Erythranthe guttata HOM05D004063 ORTHO05D005326 5.4e-21 104.0 55 85.5
Sabra02G0007700 Salix brachista HOM05D004063 ORTHO05D005326 5.4e-21 104.0 55 85.5
MSTRG.978 Avicennia marina HOM05D004063 ORTHO05D005326 7.0e-21 103.6 55 81.8
SEGI_30145 Sequoiadendron giganteum HOM05D004063 ORTHO05D005326 7.0e-21 103.6 55 85.5
AL1G33510 Arabidopsis lyrata HOM05D004063 ORTHO05D005326 9.1e-21 103.2 55 85.5
AT1G20575 Arabidopsis thaliana HOM05D004063 ORTHO05D005326 9.1e-21 103.2 55 85.5
BcaB03g14313 Brassica carinata HOM05D004063 ORTHO05D005326 9.1e-21 103.2 55 85.5
BcaB07g32056 Brassica carinata HOM05D004063 ORTHO05D005326 9.1e-21 103.2 55 85.5
BcaC05g25963 Brassica carinata HOM05D004063 ORTHO05D005326 9.1e-21 103.2 55 85.5
A07p15610 Brassica napus HOM05D004063 ORTHO05D005326 9.1e-21 103.2 55 85.5
C05p19140 Brassica napus HOM05D004063 ORTHO05D005326 9.1e-21 103.2 55 85.5
C07p22960 Brassica napus HOM05D004063 ORTHO05D005326 9.1e-21 103.2 55 85.5
BolC5t30614H Brassica oleracea HOM05D004063 ORTHO05D005326 9.1e-21 103.2 55 85.5
BolC7t42835H Brassica oleracea HOM05D004063 ORTHO05D005326 9.1e-21 103.2 55 85.5
BraA07t29300Z Brassica rapa HOM05D004063 ORTHO05D005326 9.1e-21 103.2 55 85.5
CANSAT21G0854 Cannabis sativa HOM05D004063 ORTHO05D005326 9.1e-21 103.2 55 85.5
CARHR021040 Cardamine hirsuta HOM05D004063 ORTHO05D005326 9.1e-21 103.2 55 85.5
Thhalv10008599m.g Eutrema salsugineum HOM05D004063 ORTHO05D005326 9.1e-21 103.2 55 85.5
Sp1g18280 Schrenkiella parvula HOM05D004063 ORTHO05D005326 9.1e-21 103.2 55 85.5
HPP92_006203 Vanilla planifolia HOM05D004063 ORTHO05D005326 9.1e-21 103.2 55 83.6
SalBow5G2049 Salvia bowleyana HOM05D004063 ORTHO05D005326 1.2e-20 102.8 55 83.6
Aa31LG7G4830 Aethionema arabicum HOM05D004063 ORTHO05D005326 1.6e-20 102.4 55 85.5
Carub.0001s2006 Capsella rubella HOM05D004063 ORTHO05D005326 2.0e-20 102.1 55 85.5
Ah.04g164080 Amaranthus hybridus HOM05D004150 ORTHO05D005087 7.7e-20 100.1 60 80.0
CBR_g50625 Chara braunii HOM05D004063 ORTHO05D005326 1.0e-19 99.8 57 71.9
Manes.12G151825 Manihot esculenta HOM05D004063 ORTHO05D005326 6.6e-19 97.1 55 81.8
Pp3c13_6200 Physcomitrium patens HOM05D004063 ORTHO05D005326 6.6e-19 97.1 55 76.4
A06p16570 Brassica napus HOM05D004063 ORTHO05D005326 1.1e-18 96.3 55 80.0
CBR_g19920 Chara braunii HOM05D004063 ORTHO05D005326 1.1e-18 96.3 57 70.2
BraA06t24763Z Brassica rapa HOM05D004063 ORTHO05D005326 1.5e-18 95.9 58 77.6
SMO147G0209 Selaginella moellendorffii HOM05D004063 ORTHO05D005326 1.5e-18 95.9 55 80.0
Mapoly0048s0015 Marchantia polymorpha HOM05D004063 ORTHO05D005326 1.2e-17 92.8 55 69.1
Cfa026140 Carpinus fangiana HOM05D004063 ORTHO05D005326 2.1e-17 92.0 55 74.5
TAR376G1187 Trochodendron aralioides HOM05D004063 ORTHO05D005326 3.6e-17 91.3 55 80.0
Ciclev10003501m.g Citrus clementina HOM05D004063 ORTHO05D005326 1.8e-16 89.0 56 75.0
MCO11G313 Micromonas commoda HOM05D004063 ORTHO05D005326 6.8e-16 87.0 55 69.1
vmacro17869 Vaccinium macrocarpon HOM05D004063 ORTHO05D005326 8.9e-16 86.7 70 62.9
Cfa014082 Carpinus fangiana HOM05D004063 ORTHO05D005326 1.5e-15 85.9 46 82.6
PRCOL_00004250 Prasinoderma coloniale HOM05D004063 ORTHO05D005326 3.4e-15 84.7 55 67.3
Cc02_g33840 Coffea canephora HOM05D004063 ORTHO05D005326 2.9e-14 81.6 55 74.5
Cre03.g150950 Chlamydomonas reinhardtii HOM05D004063 ORTHO05D005326 3.2e-13 78.2 53 64.2
Haze_27556 Corylus avellana HOM05D004063 ORTHO05D005326 1.2e-12 76.3 53 64.2
MBI08_g37091_MAGBIO Magnolia biondii HOM05D004063 ORTHO05D005326 2.0e-12 75.5 55 67.3
COL.COLO4_05219 Corchorus olitorius HOM05D004063 ORTHO05D005326 7.8e-12 73.6 55 69.1
SalBow5G0394 Salvia bowleyana HOM05D004063 ORTHO05D005326 5.0e-11 70.9 35 88.6
SalBow5G4311 Salvia bowleyana HOM05D004063 ORTHO05D005326 5.0e-11 70.9 35 88.6
SalBow5G5369 Salvia bowleyana HOM05D004063 ORTHO05D005326 5.0e-11 70.9 35 88.6
arahy.Tifrunner.gnm1.ann1.ND9UIP Arachis hypogaea HOM05D004063 ORTHO05D013367 1.2e-09 66.2 46 69.6
arahy.Tifrunner.gnm1.ann1.RK3M4K Arachis hypogaea HOM05D004063 ORTHO05D001221 1.2e-09 66.2 46 69.6
arahy.Tifrunner.gnm1.ann1.SDYE8W Arachis hypogaea HOM05D004063 ORTHO05D013367 1.2e-09 66.2 46 69.6
arahy.Tifrunner.gnm1.ann1.N6YLHX Arachis hypogaea HOM05D004063 ORTHO05D005326 1.6e-09 65.9 46 69.6
AagrBONN_evm.TU.Sc2ySwM_117.93 Anthoceros agrestis HOM05D004063 ORTHO05D005326 2.1e-09 65.5 35 82.9
Rhsim13G0010800 Rhododendron simsii HOM05D000068 ORTHO05D000084 4.0e-08 61.2 69 52.2
arahy.Tifrunner.gnm1.ann1.Z2LGXF Arachis hypogaea HOM05D004063 ORTHO05D013367 1.2e-07 59.7 46 67.4
Cpa.g.c43717 Carica papaya HOM05D004063 ORTHO05D005326 9.8e-07 56.6 28 85.7


User provided reference genes

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