Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g21160 Coffea canephora HOM05D004063 ORTHO05D022408 5.1e-26 120.6 72 100.0
Cc00_g23370 Coffea canephora HOM05D004063 ORTHO05D005326 1.9e-12 75.5 37 97.3
Cc02_g33840 Coffea canephora HOM05D004063 ORTHO05D005326 1.9e-12 75.5 37 97.3
Cc07_g21130 Coffea canephora HOM05D004063 ORTHO05D005326 1.9e-12 75.5 37 97.3
Oeu000693.1 Olea europaea HOM05D004063 ORTHO05D005326 1.7e-08 62.4 38 81.6
vmacro17869 Vaccinium macrocarpon HOM05D004063 ORTHO05D005326 4.8e-08 60.8 34 79.4
Lalb_Chr05g0218721 Lupinus albus HOM05D004063 ORTHO05D005326 6.3e-08 60.5 36 75.0
Hma1.2p1_0157F.1_g069400 Hydrangea macrophylla HOM05D004063 ORTHO05D005326 8.2e-08 60.1 37 73.0
arahy.Tifrunner.gnm1.ann1.YJK3BU Arachis hypogaea HOM05D004063 ORTHO05D005326 1.1e-07 59.7 36 75.0
Lalb_Chr16g0384201 Lupinus albus HOM05D004063 ORTHO05D005326 1.1e-07 59.7 36 75.0
SalBow5G1940 Salvia bowleyana HOM05D009895 ORTHO05D022408 1.4e-07 59.3 34 79.4
SalBow5G4685 Salvia bowleyana HOM05D009895 ORTHO05D022408 1.4e-07 59.3 34 79.4
SalBow7G2995 Salvia bowleyana HOM05D004063 ORTHO05D005326 1.4e-07 59.3 34 79.4
Thecc.08G059500 Theobroma cacao HOM05D004063 ORTHO05D005326 1.4e-07 59.3 33 78.8
CSS0027821 Camellia sinensis var. sinensis HOM05D004063 ORTHO05D005326 1.8e-07 58.9 34 76.5
Glyma.13G171700 Glycine max HOM05D004063 ORTHO05D005326 1.8e-07 58.9 35 80.0
Manes.10G039800 Manihot esculenta HOM05D004063 ORTHO05D005326 1.8e-07 58.9 33 81.8
Phvul.003G057700 Phaseolus vulgaris HOM05D004063 ORTHO05D005326 1.8e-07 58.9 36 72.2
arahy.Tifrunner.gnm1.ann1.G5WY8I Arachis hypogaea HOM05D001447 ORTHO05D005061 2.4e-07 58.5 36 75.0
arahy.Tifrunner.gnm1.ann1.T45K83 Arachis hypogaea HOM05D004063 ORTHO05D005326 2.4e-07 58.5 36 75.0
Oeu007480.1 Olea europaea HOM05D004063 ORTHO05D005326 2.4e-07 58.5 37 78.4
Potri.002G010300 Populus trichocarpa HOM05D004063 ORTHO05D005326 2.4e-07 58.5 32 81.2
SalBow5G2049 Salvia bowleyana HOM05D004063 ORTHO05D005326 2.4e-07 58.5 35 74.3
TAR376G1187 Trochodendron aralioides HOM05D004063 ORTHO05D005326 2.4e-07 58.5 36 77.8
Actinidia37921 Actinidia chinensis HOM05D004063 ORTHO05D005326 3.1e-07 58.2 34 73.5
ClCG11G018680 Citrullus lanatus HOM05D004063 ORTHO05D005326 3.1e-07 58.2 34 76.5
Ciclev10003501m.g Citrus clementina HOM05D004063 ORTHO05D005326 3.1e-07 58.2 33 81.8
MELO3C017019.2 Cucumis melo HOM05D004063 ORTHO05D005326 3.1e-07 58.2 34 76.5
Glyma.07G204400 Glycine max HOM05D004063 ORTHO05D005326 3.1e-07 58.2 36 72.2
SalBow5G2926 Salvia bowleyana HOM05D004063 ORTHO05D022408 4.1e-07 57.8 34 76.5
SalBow5G3951 Salvia bowleyana HOM05D004063 ORTHO05D022408 4.1e-07 57.8 34 76.5
SalBow5G4311 Salvia bowleyana HOM05D004063 ORTHO05D005326 4.1e-07 57.8 34 76.5
SalBow5G4788 Salvia bowleyana HOM05D004063 ORTHO05D022408 4.1e-07 57.8 34 76.5
SalBow5G5369 Salvia bowleyana HOM05D004063 ORTHO05D005326 4.1e-07 57.8 34 76.5
MSTRG.978 Avicennia marina HOM05D004063 ORTHO05D005326 5.3e-07 57.4 32 81.2
Gohir.D02G100300 Gossypium hirsutum HOM05D004063 ORTHO05D005326 5.3e-07 57.4 33 78.8
Nn6g31864 Nelumbo nucifera HOM05D004063 ORTHO05D005326 5.3e-07 57.4 32 81.2
Dinv05531 Davidia involucrata HOM05D004063 ORTHO05D005326 6.9e-07 57.0 37 67.6
Psat7g118640 Pisum sativum HOM05D004063 ORTHO05D005326 6.9e-07 57.0 34 70.6
SalBow5G0233 Salvia bowleyana HOM05D004063 ORTHO05D005326 6.9e-07 57.0 34 76.5
SalBow5G0394 Salvia bowleyana HOM05D004063 ORTHO05D005326 6.9e-07 57.0 34 76.5
SalBow5G1556 Salvia bowleyana HOM05D004063 ORTHO05D005326 6.9e-07 57.0 34 76.5
SalBow5G2247 Salvia bowleyana HOM05D004063 ORTHO05D005326 6.9e-07 57.0 34 76.5
Sp1g18280 Schrenkiella parvula HOM05D004063 ORTHO05D005326 6.9e-07 57.0 33 78.8
HanXRQChr15g0492711 Helianthus annuus HOM05D004063 ORTHO05D005326 9.1e-07 56.6 33 69.7
Lsat_1_v5_gn_9_45181 Lactuca sativa HOM05D004063 ORTHO05D005326 9.1e-07 56.6 33 72.7
Lj4g0024263 Lotus japonicus HOM05D004063 ORTHO05D005326 9.1e-07 56.6 36 66.7
Nitab4.5_0000588g0070 Nicotiana tabacum HOM05D004063 ORTHO05D005326 9.1e-07 56.6 32 71.9
QL02p014238 Quercus lobata HOM05D004063 ORTHO05D005326 9.1e-07 56.6 29 86.2
Sabra02G0007700 Salix brachista HOM05D004063 ORTHO05D005326 9.1e-07 56.6 31 80.6
CDE05G0379 Ceratophyllum demersum HOM05D004063 ORTHO05D005326 1.2e-06 56.2 33 78.8
Ca_26048_v3 Cicer arietinum L. HOM05D004063 ORTHO05D005326 1.2e-06 56.2 32 75.0
Duzib116G0298 Durio zibethinus HOM05D004063 ORTHO05D005326 1.2e-06 56.2 30 86.7
Migut.C00386 Erythranthe guttata HOM05D004063 ORTHO05D005326 1.2e-06 56.2 36 69.4
MD06G1125000 Malus domestica HOM05D004063 ORTHO05D005326 1.2e-06 56.2 30 83.3
PSO063G2900 Papaver somniferum HOM05D004063 ORTHO05D005326 1.2e-06 56.2 32 71.9
TWI36G0802 Tripterygium wilfordii HOM05D004063 ORTHO05D005326 1.2e-06 56.2 36 75.0
Atru.chr13.138 Acer truncatum HOM05D004063 ORTHO05D005326 1.5e-06 55.8 30 83.3
Duzib093G1691 Durio zibethinus HOM05D004063 ORTHO05D005326 1.5e-06 55.8 30 83.3
Gorai.005G113700 Gossypium raimondii HOM05D004063 ORTHO05D005326 1.5e-06 55.8 30 83.3
Manes.12G151825 Manihot esculenta HOM05D004063 ORTHO05D005326 1.5e-06 55.8 33 75.8
Peaxi162Scf00893g00009 Petunia axillaris HOM05D004063 ORTHO05D005326 1.5e-06 55.8 31 77.4
GSVIVG01008672001 Vitis vinifera HOM05D004063 ORTHO05D005326 1.5e-06 55.8 36 69.4
Aqoxy5G01076 Aquilegia oxysepala HOM05D004063 ORTHO05D005326 2.0e-06 55.5 31 80.6
CSS0047740 Camellia sinensis var. sinensis HOM05D004063 ORTHO05D005326 2.0e-06 55.5 33 72.7
CsaV3_4G037210 Cucumis sativus L. HOM05D004063 ORTHO05D005326 2.0e-06 55.5 34 70.6
Medtr4g087885 Medicago truncatula HOM05D004063 ORTHO05D005326 2.0e-06 55.5 36 66.7
Psat5g286640 Pisum sativum HOM05D004063 ORTHO05D005326 2.0e-06 55.5 36 66.7
Hund14546 Selenicereus undatus HOM05D004063 ORTHO05D005326 2.0e-06 55.5 32 78.1
TPR.G16276 Trifolium pratense HOM05D004063 ORTHO05D005326 2.0e-06 55.5 36 69.4
EL10Ac4g08397 Beta vulgaris HOM05D004063 ORTHO05D005326 2.6e-06 55.1 36 69.4
FvH4_5g10320 Fragaria vesca HOM05D004063 ORTHO05D005326 2.6e-06 55.1 31 77.4
FAN04G0504 Fragaria x ananassa HOM05D004063 ORTHO05D005326 2.6e-06 55.1 31 77.4
FAN08G1355 Fragaria x ananassa HOM05D004063 ORTHO05D005326 2.6e-06 55.1 31 77.4
FAN18G2216 Fragaria x ananassa HOM05D004063 ORTHO05D005326 2.6e-06 55.1 31 77.4
PSO832G0952 Papaver somniferum HOM05D004063 ORTHO05D005326 2.6e-06 55.1 32 68.8
Potri.005G250900 Populus trichocarpa HOM05D004063 ORTHO05D005326 2.6e-06 55.1 30 80.0
Prupe.5G135600 Prunus persica HOM05D004063 ORTHO05D005326 2.6e-06 55.1 27 92.6
RcHm_v2.0_Chr7g0187901 Rosa chinensis HOM05D004063 ORTHO05D005326 2.6e-06 55.1 31 77.4
CiPaw.07G138500 Carya illinoinensis HOM05D004063 ORTHO05D005326 3.4e-06 54.7 30 83.3
Sc15g0004420 Simmondsia chinensis HOM05D004063 ORTHO05D005326 3.4e-06 54.7 32 71.9
THA.LOC104809761 Tarenaya hassleriana HOM05D004063 ORTHO05D005326 3.4e-06 54.7 30 83.3
Aa31LG7G4830 Aethionema arabicum HOM05D004063 ORTHO05D005326 4.5e-06 54.3 31 80.6
A07p15610 Brassica napus HOM05D004063 ORTHO05D005326 4.5e-06 54.3 36 75.0
BraA07t29300Z Brassica rapa HOM05D004063 ORTHO05D005326 4.5e-06 54.3 36 75.0
CANSAT21G0854 Cannabis sativa HOM05D004063 ORTHO05D005326 4.5e-06 54.3 27 88.9
FAN13G1863 Fragaria x ananassa HOM05D004063 ORTHO05D005326 4.5e-06 54.3 31 74.2
Gohir.D01G091800 Gossypium hirsutum HOM05D004063 ORTHO05D005326 4.5e-06 54.3 27 88.9
Gorai.002G116900 Gossypium raimondii HOM05D004063 ORTHO05D005326 4.5e-06 54.3 27 88.9
HanXRQChr05g0144881 Helianthus annuus HOM05D004063 ORTHO05D005326 4.5e-06 54.3 29 75.9
MBI08_g37091_MAGBIO Magnolia biondii HOM05D004063 ORTHO05D005326 4.5e-06 54.3 33 72.7
SGA_v2.0_scaffold82G26227 Striga asiatica HOM05D004063 ORTHO05D005326 4.5e-06 54.3 30 80.0
ATR0693G211 Amborella trichopoda HOM05D004063 ORTHO05D005326 5.9e-06 53.9 32 68.8
BolC7t42835H Brassica oleracea HOM05D004063 ORTHO05D005326 5.9e-06 53.9 36 66.7
CAN.G311.117 Capsicum annuum HOM05D004063 ORTHO05D005326 5.9e-06 53.9 31 74.2
COL.COLO4_38533 Corchorus olitorius HOM05D004063 ORTHO05D005326 5.9e-06 53.9 31 74.2
Gohir.A02G084400 Gossypium hirsutum HOM05D004063 ORTHO05D005326 5.9e-06 53.9 30 80.0
Solyc04g082390.3 Solanum lycopersicum HOM05D004063 ORTHO05D005326 5.9e-06 53.9 27 85.2
Sopen04g035990 Solanum pennellii HOM05D004063 ORTHO05D005326 5.9e-06 53.9 27 85.2
PGSC0003DMG400009980 Solanum tuberosum HOM05D004063 ORTHO05D005326 5.9e-06 53.9 27 85.2
Cpa.g.sc801.1 Carica papaya HOM05D004063 ORTHO05D005326 7.7e-06 53.5 33 69.7
Sabra05G0194100 Salix brachista HOM05D001348 ORTHO05D002788 7.7e-06 53.5 33 72.7
unitig_22.g5884 Utricularia gibba HOM05D004063 ORTHO05D005326 7.7e-06 53.5 33 81.8


User provided reference genes

Program Settings