Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g21130 Coffea canephora HOM05D004063 ORTHO05D005326 4.3e-56 221.1 112 100.0
Cc02_g33840 Coffea canephora HOM05D004063 ORTHO05D005326 2.8e-39 165.2 108 77.8
Cc00_g23370 Coffea canephora HOM05D004063 ORTHO05D005326 6.3e-39 164.1 82 100.0
SalBow7G2995 Salvia bowleyana HOM05D004063 ORTHO05D005326 2.0e-32 142.5 79 88.6
Oeu000693.1 Olea europaea HOM05D004063 ORTHO05D005326 7.4e-32 140.6 83 85.5
SalBow5G4311 Salvia bowleyana HOM05D004063 ORTHO05D005326 7.4e-32 140.6 79 86.1
SalBow5G5369 Salvia bowleyana HOM05D004063 ORTHO05D005326 7.4e-32 140.6 79 86.1
SalBow5G0233 Salvia bowleyana HOM05D004063 ORTHO05D005326 9.7e-32 140.2 79 87.3
SalBow5G1556 Salvia bowleyana HOM05D004063 ORTHO05D005326 9.7e-32 140.2 79 87.3
SalBow5G2247 Salvia bowleyana HOM05D004063 ORTHO05D005326 9.7e-32 140.2 79 87.3
vmacro17869 Vaccinium macrocarpon HOM05D004063 ORTHO05D005326 1.3e-31 139.8 79 83.5
SalBow5G2049 Salvia bowleyana HOM05D004063 ORTHO05D005326 1.7e-31 139.4 79 87.3
Dinv05531 Davidia involucrata HOM05D004063 ORTHO05D005326 2.8e-31 138.7 82 80.5
Hund14546 Selenicereus undatus HOM05D004063 ORTHO05D005326 2.8e-31 138.7 82 82.9
HanXRQChr15g0492711 Helianthus annuus HOM05D004063 ORTHO05D005326 3.7e-31 138.3 78 82.1
PSO063G2900 Papaver somniferum HOM05D004063 ORTHO05D005326 3.7e-31 138.3 78 83.3
Ciclev10003501m.g Citrus clementina HOM05D004063 ORTHO05D005326 4.8e-31 137.9 81 82.7
MELO3C017019.2 Cucumis melo HOM05D004063 ORTHO05D005326 4.8e-31 137.9 79 83.5
Lsat_1_v5_gn_9_45181 Lactuca sativa HOM05D004063 ORTHO05D005326 4.8e-31 137.9 78 82.1
Actinidia37921 Actinidia chinensis HOM05D004063 ORTHO05D005326 6.3e-31 137.5 79 81.0
PSO832G0952 Papaver somniferum HOM05D004063 ORTHO05D005326 8.2e-31 137.1 78 82.1
Sc15g0004420 Simmondsia chinensis HOM05D004063 ORTHO05D005326 8.2e-31 137.1 78 82.1
TAR376G1187 Trochodendron aralioides HOM05D004063 ORTHO05D005326 8.2e-31 137.1 82 81.7
CDE05G0379 Ceratophyllum demersum HOM05D004063 ORTHO05D005326 1.1e-30 136.7 83 80.7
PGR083G1742 Punica granatum HOM05D004063 ORTHO05D005326 1.1e-30 136.7 82 79.3
MSTRG.978 Avicennia marina HOM05D004063 ORTHO05D005326 1.4e-30 136.3 78 83.3
Migut.C00386 Erythranthe guttata HOM05D004063 ORTHO05D005326 1.4e-30 136.3 82 81.7
Hma1.2p1_0157F.1_g069400 Hydrangea macrophylla HOM05D004063 ORTHO05D005326 1.4e-30 136.3 82 81.7
Lalb_Chr05g0218721 Lupinus albus HOM05D004063 ORTHO05D005326 1.4e-30 136.3 82 80.5
Psat7g118640 Pisum sativum HOM05D004063 ORTHO05D005326 1.4e-30 136.3 79 79.7
GSVIVG01008672001 Vitis vinifera HOM05D004063 ORTHO05D005326 1.4e-30 136.3 82 80.5
HanXRQChr05g0144881 Helianthus annuus HOM05D004063 ORTHO05D005326 1.8e-30 136.0 74 85.1
Oeu007480.1 Olea europaea HOM05D004063 ORTHO05D005326 1.8e-30 136.0 83 83.1
Thecc.08G059500 Theobroma cacao HOM05D004063 ORTHO05D005326 1.8e-30 136.0 79 82.3
Lalb_Chr16g0384201 Lupinus albus HOM05D004063 ORTHO05D005326 2.4e-30 135.6 82 80.5
QL02p014238 Quercus lobata HOM05D004063 ORTHO05D005326 2.4e-30 135.6 75 86.7
CiPaw.07G138500 Carya illinoinensis HOM05D004063 ORTHO05D005326 3.1e-30 135.2 76 88.2
Peaxi162Scf00893g00009 Petunia axillaris HOM05D004063 ORTHO05D005326 3.1e-30 135.2 77 84.4
CSS0027821 Camellia sinensis var. sinensis HOM05D004063 ORTHO05D005326 4.1e-30 134.8 79 81.0
Manes.10G039800 Manihot esculenta HOM05D004063 ORTHO05D005326 4.1e-30 134.8 79 83.5
CSS0047740 Camellia sinensis var. sinensis HOM05D004063 ORTHO05D005326 5.3e-30 134.4 79 79.7
Gohir.D02G100300 Gossypium hirsutum HOM05D004063 ORTHO05D005326 5.3e-30 134.4 79 82.3
MBI08_g37091_MAGBIO Magnolia biondii HOM05D004063 ORTHO05D005326 5.3e-30 134.4 79 82.3
CsaV3_4G037210 Cucumis sativus L. HOM05D004063 ORTHO05D005326 6.9e-30 134.0 79 79.7
Medtr4g087885 Medicago truncatula HOM05D004063 ORTHO05D005326 6.9e-30 134.0 82 75.6
Nn6g31864 Nelumbo nucifera HOM05D004063 ORTHO05D005326 6.9e-30 134.0 78 83.3
Os03g0824400 Oryza sativa ssp. japonica HOM05D004063 ORTHO05D005326 6.9e-30 134.0 82 76.8
Phvul.003G057700 Phaseolus vulgaris HOM05D004063 ORTHO05D005326 6.9e-30 134.0 82 76.8
Aqoxy5G01076 Aquilegia oxysepala HOM05D004063 ORTHO05D005326 9.1e-30 133.7 77 83.1
Glyma.13G171700 Glycine max HOM05D004063 ORTHO05D005326 9.1e-30 133.7 81 80.2
Lj4g0024263 Lotus japonicus HOM05D004063 ORTHO05D005326 9.1e-30 133.7 82 76.8
CAN.G311.117 Capsicum annuum HOM05D004063 ORTHO05D005326 1.2e-29 133.3 77 83.1
Glyma.07G204400 Glycine max HOM05D004063 ORTHO05D005326 1.2e-29 133.3 82 76.8
Solyc04g082390.3 Solanum lycopersicum HOM05D004063 ORTHO05D005326 1.2e-29 133.3 73 87.7
Sopen04g035990 Solanum pennellii HOM05D004063 ORTHO05D005326 1.2e-29 133.3 73 87.7
PGSC0003DMG400009980 Solanum tuberosum HOM05D004063 ORTHO05D005326 1.2e-29 133.3 73 87.7
Ca_26048_v3 Cicer arietinum L. HOM05D004063 ORTHO05D005326 1.5e-29 132.9 78 76.9
Gorai.005G113700 Gossypium raimondii HOM05D004063 ORTHO05D005326 1.5e-29 132.9 76 84.2
Psat5g286640 Pisum sativum HOM05D004063 ORTHO05D005326 1.5e-29 132.9 82 74.4
Sp1g18280 Schrenkiella parvula HOM05D004063 ORTHO05D005326 1.5e-29 132.9 79 83.5
Cfa000095 Carpinus fangiana HOM05D004063 ORTHO05D005326 2.0e-29 132.5 73 87.7
Haze_06929 Corylus avellana HOM05D004063 ORTHO05D005326 2.0e-29 132.5 73 87.7
Haze_06936 Corylus avellana HOM05D004063 ORTHO05D005326 2.0e-29 132.5 73 87.7
Duzib116G0298 Durio zibethinus HOM05D004063 ORTHO05D005326 2.0e-29 132.5 76 84.2
arahy.Tifrunner.gnm1.ann1.G5WY8I Arachis hypogaea HOM05D001447 ORTHO05D005061 2.6e-29 132.1 82 79.3
arahy.Tifrunner.gnm1.ann1.T45K83 Arachis hypogaea HOM05D004063 ORTHO05D005326 2.6e-29 132.1 82 79.3
Zm00001eb062940 Zea mays HOM05D004063 ORTHO05D005326 2.6e-29 132.1 71 87.3
Haze_22784 Corylus avellana HOM05D004063 ORTHO05D005326 3.4e-29 131.7 73 87.7
SGA_v2.0_scaffold82G26227 Striga asiatica HOM05D004063 ORTHO05D005326 3.4e-29 131.7 76 84.2
TPR.G16276 Trifolium pratense HOM05D004063 ORTHO05D005326 3.4e-29 131.7 82 76.8
TPR.G34273 Trifolium pratense HOM05D004063 ORTHO05D005326 3.4e-29 131.7 77 79.2
arahy.Tifrunner.gnm1.ann1.YJK3BU Arachis hypogaea HOM05D004063 ORTHO05D005326 4.5e-29 131.3 82 78.0
Nitab4.5_0000588g0070 Nicotiana tabacum HOM05D004063 ORTHO05D005326 4.5e-29 131.3 77 80.5
Potri.002G010300 Populus trichocarpa HOM05D004063 ORTHO05D005326 4.5e-29 131.3 78 80.8
Gohir.A02G084400 Gossypium hirsutum HOM05D004063 ORTHO05D005326 5.9e-29 131.0 76 82.9
TWI36G0802 Tripterygium wilfordii HOM05D004063 ORTHO05D005326 5.9e-29 131.0 82 78.0
unitig_22.g5884 Utricularia gibba HOM05D004063 ORTHO05D005326 5.9e-29 131.0 79 84.8
DCAR_003678 Daucus carota HOM05D004063 ORTHO05D005326 7.7e-29 130.6 80 81.2
Eucgr.F01769 Eucalyptus grandis HOM05D004063 ORTHO05D005326 7.7e-29 130.6 73 83.6
A07p15610 Brassica napus HOM05D004063 ORTHO05D005326 1.0e-28 130.2 82 81.7
BolC7t42835H Brassica oleracea HOM05D004063 ORTHO05D005326 1.0e-28 130.2 82 78.0
BraA07t29300Z Brassica rapa HOM05D004063 ORTHO05D005326 1.0e-28 130.2 82 81.7
FAN04G0504 Fragaria x ananassa HOM05D004063 ORTHO05D005326 1.0e-28 130.2 77 79.2
FAN08G1355 Fragaria x ananassa HOM05D004063 ORTHO05D005326 1.0e-28 130.2 77 79.2
Gohir.D01G091800 Gossypium hirsutum HOM05D004063 ORTHO05D005326 1.0e-28 130.2 73 84.9
Gorai.002G116900 Gossypium raimondii HOM05D004063 ORTHO05D005326 1.0e-28 130.2 73 84.9
MD06G1125000 Malus domestica HOM05D004063 ORTHO05D005326 1.0e-28 130.2 76 84.2
Potri.005G250900 Populus trichocarpa HOM05D004063 ORTHO05D005326 1.0e-28 130.2 76 82.9
ATR0693G211 Amborella trichopoda HOM05D004063 ORTHO05D005326 1.3e-28 129.8 78 75.6
CDE05G0316 Ceratophyllum demersum HOM05D004063 ORTHO05D005326 1.3e-28 129.8 83 74.7
COL.COLO4_38533 Corchorus olitorius HOM05D004063 ORTHO05D005326 1.7e-28 129.4 77 77.9
FAN13G1863 Fragaria x ananassa HOM05D004063 ORTHO05D005326 1.7e-28 129.4 77 77.9
Gohir.A01G105500 Gossypium hirsutum HOM05D004063 ORTHO05D005326 1.7e-28 129.4 72 86.1
Sabra02G0007700 Salix brachista HOM05D004063 ORTHO05D005326 1.7e-28 129.4 77 80.5
Aa31LG7G4830 Aethionema arabicum HOM05D004063 ORTHO05D005326 2.2e-28 129.0 77 83.1
BcaB07g32056 Brassica carinata HOM05D004063 ORTHO05D005326 2.2e-28 129.0 77 83.1
HPP92_006203 Vanilla planifolia HOM05D004063 ORTHO05D005326 2.2e-28 129.0 73 86.3
AL1G33510 Arabidopsis lyrata HOM05D004063 ORTHO05D005326 2.9e-28 128.6 76 84.2
AT1G20575 Arabidopsis thaliana HOM05D004063 ORTHO05D005326 2.9e-28 128.6 76 84.2
BcaB03g14313 Brassica carinata HOM05D004063 ORTHO05D005326 2.9e-28 128.6 76 84.2
BcaC05g25963 Brassica carinata HOM05D004063 ORTHO05D005326 2.9e-28 128.6 76 82.9
C05p19140 Brassica napus HOM05D004063 ORTHO05D005326 2.9e-28 128.6 76 82.9
C07p22960 Brassica napus HOM05D004063 ORTHO05D005326 2.9e-28 128.6 76 82.9
FAN18G2216 Fragaria x ananassa HOM05D004063 ORTHO05D005326 2.9e-28 128.6 77 79.2
CARHR021040 Cardamine hirsuta HOM05D004063 ORTHO05D005326 3.8e-28 128.3 76 84.2
Thhalv10008599m.g Eutrema salsugineum HOM05D004063 ORTHO05D005326 3.8e-28 128.3 83 79.5
Manes.12G151825 Manihot esculenta HOM05D004063 ORTHO05D005326 3.8e-28 128.3 79 81.0
Prupe.5G135600 Prunus persica HOM05D004063 ORTHO05D005326 3.8e-28 128.3 73 84.9
Sabra05G0194100 Salix brachista HOM05D001348 ORTHO05D002788 3.8e-28 128.3 79 78.5
CANSAT21G0854 Cannabis sativa HOM05D004063 ORTHO05D005326 5.0e-28 127.9 73 84.9
THA.LOC104809761 Tarenaya hassleriana HOM05D004063 ORTHO05D005326 5.0e-28 127.9 76 82.9
FvH4_5g10320 Fragaria vesca HOM05D004063 ORTHO05D005326 6.5e-28 127.5 77 77.9
Atru.chr13.138 Acer truncatum HOM05D004063 ORTHO05D005326 1.1e-27 126.7 76 80.3
Carub.0001s2006 Capsella rubella HOM05D004063 ORTHO05D005326 1.1e-27 126.7 83 77.1
RcHm_v2.0_Chr7g0187901 Rosa chinensis HOM05D004063 ORTHO05D005326 1.4e-27 126.3 77 77.9
AUR62019619 Chenopodium quinoa HOM05D004063 ORTHO05D005326 1.9e-27 125.9 80 75.0
AUR62039603 Chenopodium quinoa HOM05D004063 ORTHO05D005326 1.9e-27 125.9 80 73.8
Duzib093G1691 Durio zibethinus HOM05D004063 ORTHO05D005326 1.9e-27 125.9 78 80.8
EL10Ac4g08397 Beta vulgaris HOM05D004063 ORTHO05D005326 3.2e-27 125.2 86 67.4
ClCG11G018680 Citrullus lanatus HOM05D004063 ORTHO05D005326 3.6e-26 121.7 107 61.7
ATR0219G025 Amborella trichopoda HOM05D004063 ORTHO05D005326 6.7e-25 117.5 97 60.8
RhsimUnG0172300 Rhododendron simsii HOM05D004063 ORTHO05D005326 1.3e-23 113.2 111 55.9
Pp3c13_6200 Physcomitrium patens HOM05D004063 ORTHO05D005326 1.7e-23 112.8 77 70.1
SalBow5G0394 Salvia bowleyana HOM05D004063 ORTHO05D005326 2.8e-23 112.1 68 82.4
Cfa014082 Carpinus fangiana HOM05D004063 ORTHO05D005326 4.8e-23 111.3 64 82.8
Cpa.g.sc801.1 Carica papaya HOM05D004063 ORTHO05D005326 1.1e-22 110.2 68 76.5
SMO147G0209 Selaginella moellendorffii HOM05D004063 ORTHO05D005326 3.1e-22 108.6 72 68.1
AagrBONN_evm.TU.Sc2ySwM_117.93 Anthoceros agrestis HOM05D004063 ORTHO05D005326 2.6e-21 105.5 72 68.1
Mapoly0048s0015 Marchantia polymorpha HOM05D004063 ORTHO05D005326 5.9e-21 104.4 73 69.9
CBR_g50625 Chara braunii HOM05D004063 ORTHO05D005326 2.5e-19 99.0 84 56.0
CBR_g19920 Chara braunii HOM05D004063 ORTHO05D005326 5.5e-19 97.8 79 58.2
Cfa026140 Carpinus fangiana HOM05D004063 ORTHO05D005326 2.6e-16 89.0 79 55.7
MCO11G313 Micromonas commoda HOM05D004063 ORTHO05D005326 1.7e-15 86.3 77 57.1
Medtr2g097220 Medicago truncatula HOM05D004063 ORTHO05D005326 8.2e-15 84.0 45 84.4
Rhsim01G0045200 Rhododendron simsii HOM05D004063 ORTHO05D005326 8.2e-15 84.0 53 75.5
PRCOL_00004250 Prasinoderma coloniale HOM05D004063 ORTHO05D005326 1.1e-14 83.6 78 52.6
Ah.04g164080 Amaranthus hybridus HOM05D004150 ORTHO05D005087 5.3e-14 81.3 51 74.5
ECA232G2837 Erigeron canadensis HOM05D004063 ORTHO05D005326 1.6e-13 79.7 45 84.4
COL.COLO4_05219 Corchorus olitorius HOM05D004063 ORTHO05D005326 7.7e-13 77.4 60 63.3
Cc07_g21160 Coffea canephora HOM05D004063 ORTHO05D022408 3.8e-12 75.1 37 97.3
BolC5t30614H Brassica oleracea HOM05D004063 ORTHO05D005326 6.5e-12 74.3 40 90.0
Cre03.g150950 Chlamydomonas reinhardtii HOM05D004063 ORTHO05D005326 1.9e-11 72.8 79 45.6
SEGI_30145 Sequoiadendron giganteum HOM05D004063 ORTHO05D005326 1.9e-11 72.8 44 77.3
Lj4A11G65 Lonicera japonica HOM05D004063 ORTHO05D005326 2.3e-09 65.9 78 51.3
Haze_27556 Corylus avellana HOM05D004063 ORTHO05D005326 1.5e-08 63.2 59 54.2
Oeu037745.1 Olea europaea HOM05D004063 ORTHO05D005326 2.6e-08 62.4 36 77.8
SalBow5G1940 Salvia bowleyana HOM05D009895 ORTHO05D022408 7.5e-08 60.8 35 80.0
SalBow5G4685 Salvia bowleyana HOM05D009895 ORTHO05D022408 7.5e-08 60.8 35 80.0
SalBow5G2926 Salvia bowleyana HOM05D004063 ORTHO05D022408 2.8e-07 58.9 34 79.4
SalBow5G3951 Salvia bowleyana HOM05D004063 ORTHO05D022408 2.8e-07 58.9 34 79.4
SalBow5G4788 Salvia bowleyana HOM05D004063 ORTHO05D022408 2.8e-07 58.9 34 79.4
BraA06t24763Z Brassica rapa HOM05D004063 ORTHO05D005326 4.8e-07 58.2 43 72.1
TAR381G0210 Trochodendron aralioides HOM05D004063 ORTHO05D005326 7.0e-06 54.3 37 67.6


User provided reference genes

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