Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g20930 Coffea canephora HOM05D006254 ORTHO05D007409 5.4e-308 1060.1 505 100.0
Dinv02479 Davidia involucrata HOM05D006254 ORTHO05D007409 9.6e-204 713.8 504 68.8
Potri.004G137900 Populus trichocarpa HOM05D006254 ORTHO05D007409 5.1e-189 664.8 505 64.8
MSTRG.23507 Avicennia marina HOM05D006254 ORTHO05D007409 1.3e-184 650.2 504 63.1
Oeu011007.1 Olea europaea HOM05D006254 ORTHO05D007409 1.1e-183 647.1 504 62.9
HanXRQChr01g0017761 Helianthus annuus HOM05D006254 ORTHO05D007409 3.2e-183 645.6 504 63.5
Prupe.6G059200 Prunus persica HOM05D006254 ORTHO05D007409 5.1e-181 638.3 486 63.8
ECA248G3109 Erigeron canadensis HOM05D006254 ORTHO05D007409 1.1e-180 637.1 502 63.5
CiPaw.04G178100 Carya illinoinensis HOM05D006254 ORTHO05D007409 1.5e-180 636.7 485 62.9
QL10p038598 Quercus lobata HOM05D006254 ORTHO05D007409 2.5e-180 636.0 493 62.9
Sopen03g020950 Solanum pennellii HOM05D006254 ORTHO05D007409 1.6e-179 633.3 504 61.1
CANSAT54G2690 Cannabis sativa HOM05D006254 ORTHO05D007409 2.4e-178 629.4 498 60.0
MD03G1072300 Malus domestica HOM05D006254 ORTHO05D007409 3.1e-178 629.0 487 62.0
Solyc03g078230.3 Solanum lycopersicum HOM05D006254 ORTHO05D007409 4.1e-178 628.6 504 60.9
GSVIVG01000233001 Vitis vinifera HOM05D003183 ORTHO05D007409 6.9e-178 627.9 504 61.9
TAR628G1014 Trochodendron aralioides HOM05D006254 ORTHO05D007409 2.0e-177 626.3 504 60.7
Lsat_1_v5_gn_1_78401 Lactuca sativa HOM05D006254 ORTHO05D007409 2.6e-177 625.9 471 64.8
Cfa002251 Carpinus fangiana HOM05D006254 ORTHO05D007409 3.8e-176 622.1 494 61.3
Peaxi162Scf00030g00012 Petunia axillaris HOM05D006254 ORTHO05D007409 7.9e-174 614.4 481 62.8
Gohir.A05G375400 Gossypium hirsutum HOM05D006254 ORTHO05D007409 7.4e-172 607.8 494 58.7
TWI31G0260 Tripterygium wilfordii HOM05D006254 ORTHO05D007409 7.4e-172 607.8 485 60.4
EL10Ac4g08984 Beta vulgaris HOM05D006254 ORTHO05D007409 1.6e-171 606.7 536 56.3
Lalb_Chr12g0202731 Lupinus albus HOM05D006254 ORTHO05D007409 8.2e-171 604.4 504 58.9
Ca_17588_v3 Cicer arietinum L. HOM05D006254 ORTHO05D007409 4.1e-170 602.1 503 60.4
PSO017G1045 Papaver somniferum HOM05D006254 ORTHO05D007409 4.1e-170 602.1 505 58.6
Gorai.012G045500 Gossypium raimondii HOM05D006254 ORTHO05D007409 9.0e-170 600.9 494 58.9
Migut.H00776 Erythranthe guttata HOM05D006254 ORTHO05D007409 1.5e-169 600.1 503 58.8
Sc20g0000720 Simmondsia chinensis HOM05D006254 ORTHO05D007409 2.9e-168 595.9 513 58.7
Lj4g0026953 Lotus japonicus HOM05D006254 ORTHO05D007409 5.0e-168 595.1 504 58.7
VMungo0251G0787 Vigna mungo HOM05D006254 ORTHO05D007409 1.1e-167 594.0 504 57.9
CsaV3_4G030320 Cucumis sativus L. HOM05D006254 ORTHO05D007409 4.2e-167 592.0 500 59.0
Eucgr.I00013 Eucalyptus grandis HOM05D006254 ORTHO05D007409 5.5e-167 591.7 486 58.6
arahy.Tifrunner.gnm1.ann1.9169VS Arachis hypogaea HOM05D006254 ORTHO05D007409 2.7e-166 589.3 486 59.1
FvH4_3g38370 Fragaria vesca HOM05D006254 ORTHO05D007409 6.1e-166 588.2 519 57.6
THA.LOC104803663 Tarenaya hassleriana HOM05D006254 ORTHO05D007409 7.9e-166 587.8 490 59.0
arahy.Tifrunner.gnm1.ann1.ZNEY68 Arachis hypogaea HOM05D006254 ORTHO05D007409 1.4e-165 587.0 487 58.7
FAN21G3787 Fragaria x ananassa HOM05D006254 ORTHO05D007409 2.3e-165 586.3 502 58.6
PGR119G0951 Punica granatum HOM05D006254 ORTHO05D007409 3.0e-165 585.9 503 56.9
TPR.G12754 Trifolium pratense HOM05D006254 ORTHO05D007409 6.7e-165 584.7 504 58.7
MELO3C033099.2 Cucumis melo HOM05D006254 ORTHO05D007409 1.1e-164 583.9 500 58.4
FAN25G1911 Fragaria x ananassa HOM05D006254 ORTHO05D007409 1.2e-161 573.9 502 57.4
Medtr8g095410 Medicago truncatula HOM05D006254 ORTHO05D007409 2.6e-161 572.8 503 57.5
FAN11G0663 Fragaria x ananassa HOM05D006254 ORTHO05D007409 3.4e-161 572.4 510 57.3
Carub.0001s3633 Capsella rubella HOM05D006254 ORTHO05D007409 4.5e-161 572.0 494 55.1
Sp4g18960 Schrenkiella parvula HOM05D006254 ORTHO05D007409 2.9e-160 569.3 497 55.3
BcaB02g09340 Brassica carinata HOM05D006254 ORTHO05D007409 2.5e-159 566.2 494 54.7
BcaB02g09339 Brassica carinata HOM05D006254 ORTHO05D007409 7.2e-159 564.7 494 54.5
CARHR037200 Cardamine hirsuta HOM05D006254 ORTHO05D007409 1.6e-158 563.5 497 54.9
Aqoxy5G02669 Aquilegia oxysepala HOM05D006254 ORTHO05D007409 6.7e-157 558.1 504 55.4
AT1G47570 Arabidopsis thaliana HOM05D006254 ORTHO05D007409 2.0e-156 556.6 494 54.7
Thhalv10016597m.g Eutrema salsugineum HOM05D006254 ORTHO05D007409 7.4e-156 554.7 480 56.0
Gohir.D04G040400 Gossypium hirsutum HOM05D006254 ORTHO05D007409 1.3e-155 553.9 494 54.9
CSS0012450 Camellia sinensis var. sinensis HOM05D006254 ORTHO05D007409 1.7e-155 553.5 378 68.5
BolC4t22794H Brassica oleracea HOM05D006254 ORTHO05D007409 6.3e-155 551.6 528 51.9
BcaC02g11789 Brassica carinata HOM05D006254 ORTHO05D007409 5.3e-154 548.5 495 53.5
C04p11350 Brassica napus HOM05D006254 ORTHO05D007409 5.3e-154 548.5 495 53.5
BraA05t19873Z Brassica rapa HOM05D006254 ORTHO05D007409 3.5e-153 545.8 518 51.7
RcHm_v2.0_Chr5g0068971 Rosa chinensis HOM05D006254 ORTHO05D007409 3.8e-152 542.3 501 54.7
SGA_v2.0_scaffold54G19570 Striga asiatica HOM05D006254 ORTHO05D007409 3.8e-152 542.3 558 52.2
A05p09180 Brassica napus HOM05D006254 ORTHO05D007409 5.0e-152 542.0 517 51.8
BolC4t22773H Brassica oleracea HOM05D006254 ORTHO05D007409 5.0e-152 542.0 501 52.9
Manes.12G085200 Manihot esculenta HOM05D006254 ORTHO05D007409 4.2e-151 538.9 383 65.3
Nitab4.5_0012738g0010 Nicotiana tabacum HOM05D006254 ORTHO05D007409 1.4e-149 533.9 583 49.9
DCAR_009615 Daucus carota HOM05D006254 ORTHO05D007409 2.3e-149 533.1 445 58.9
AUR62036036 Chenopodium quinoa HOM05D006254 ORTHO05D007409 2.7e-145 519.6 573 47.6
Ciclev10024761m.g Citrus clementina HOM05D003183 ORTHO05D003697 8.5e-144 514.6 416 61.8
FAN16G1494 Fragaria x ananassa HOM05D006254 ORTHO05D007409 9.4e-143 511.1 472 55.5
Phvul.002G279100 Phaseolus vulgaris HOM05D006254 ORTHO05D007409 1.0e-141 507.7 462 55.0
Os11g0175500 Oryza sativa ssp. japonica HOM05D006254 ORTHO05D007409 6.3e-139 498.4 514 49.0
Psat7g040840 Pisum sativum HOM05D006254 ORTHO05D007409 1.4e-138 497.3 433 56.4
Rhsim09G0131600 Rhododendron simsii HOM05D006254 ORTHO05D007409 9.1e-138 494.6 382 62.6
Thecc.01G235200 Theobroma cacao HOM05D006254 ORTHO05D007409 5.0e-136 488.8 445 53.9
Ah.04g163200 Amaranthus hybridus HOM05D006254 ORTHO05D007409 2.7e-134 483.0 496 50.4
Sabra04G0089300 Salix brachista HOM05D006254 ORTHO05D007409 3.4e-132 476.1 569 47.5
AL1G53850 Arabidopsis lyrata HOM05D006254 ORTHO05D007409 9.8e-132 474.6 386 57.3
Migut.H00777 Erythranthe guttata HOM05D006254 ORTHO05D007409 9.8e-132 474.6 426 54.7
HanXRQChr01g0017751 Helianthus annuus HOM05D006254 ORTHO05D007409 2.8e-131 473.0 480 50.0
Glyma.05G198100 Glycine max HOM05D006254 ORTHO05D007409 7.0e-130 468.4 436 54.4
Zm00001eb200940 Zea mays HOM05D006254 ORTHO05D007409 3.5e-129 466.1 513 47.2
Sed0010974 Sechium edule HOM05D006254 ORTHO05D007409 8.3e-123 444.9 419 54.9
Atru.chr4.972 Acer truncatum HOM05D006254 ORTHO05D007409 8.6e-120 434.9 386 57.8
RcHm_v2.0_Chr2g0157071 Rosa chinensis HOM05D006254 ORTHO05D007409 5.6e-119 432.2 401 55.6
CDE06G2483 Ceratophyllum demersum HOM05D006254 ORTHO05D007409 8.3e-115 418.3 425 49.4
Nitab4.5_0000004g0230 Nicotiana tabacum HOM05D006254 ORTHO05D007409 3.5e-113 412.9 505 48.1
MD11G1077300 Malus domestica HOM05D006254 ORTHO05D007409 2.8e-110 403.3 404 51.5
MD11G1078600 Malus domestica HOM05D006254 ORTHO05D007409 7.3e-103 378.6 440 45.2
vmacro10394 Vaccinium macrocarpon HOM05D006254 ORTHO05D007409 8.9e-101 371.7 326 59.2
HPP92_016136 Vanilla planifolia HOM05D006254 ORTHO05D007409 2.1e-94 350.5 499 41.7
AUR62004819 Chenopodium quinoa HOM05D006254 ORTHO05D007409 4.0e-93 346.3 454 42.5
Hma1.2p1_0057F.1_g032170 Hydrangea macrophylla HOM05D006254 ORTHO05D007409 6.4e-91 339.0 197 75.1
Actinidia34771 Actinidia chinensis HOM05D000969 ORTHO05D000899 3.2e-90 336.7 256 64.1
unitig_65.g29879 Utricularia gibba HOM05D006254 ORTHO05D007409 1.6e-86 324.3 493 40.6
Aa31LG5G9250 Aethionema arabicum HOM05D006254 ORTHO05D007409 5.8e-84 315.8 297 52.2
Hund06901 Selenicereus undatus HOM05D006254 ORTHO05D007409 8.4e-83 312.0 327 50.2
unitig_62.g23450 Utricularia gibba HOM05D006254 ORTHO05D007409 2.8e-78 297.0 534 37.6
MD00G1120300 Malus domestica HOM05D006254 ORTHO05D007409 1.5e-76 291.2 294 52.0
Cpa.g.sc138.23 Carica papaya HOM05D006254 ORTHO05D007409 6.4e-75 285.8 168 75.0
Haze_25433 Corylus avellana HOM05D006254 ORTHO05D007409 6.0e-73 279.3 276 53.6
Haze_25436 Corylus avellana HOM05D006254 ORTHO05D007409 6.0e-73 279.3 208 65.4
Migut.H00787 Erythranthe guttata HOM05D006254 ORTHO05D007409 6.9e-69 265.8 233 60.1
Lj4g0022315 Lotus japonicus HOM05D006254 ORTHO05D007409 1.5e-68 264.6 231 60.2
MD11G1077500 Malus domestica HOM05D006254 ORTHO05D007409 2.0e-68 264.2 381 41.7
MD00G1120800 Malus domestica HOM05D006254 ORTHO05D007409 3.3e-63 246.9 158 71.5
MD11G1078400 Malus domestica HOM05D006254 ORTHO05D007409 2.8e-62 243.8 158 70.9
Mapoly0003s0196 Marchantia polymorpha HOM05D006254 ORTHO05D007409 1.8e-56 224.6 525 29.9
AagrBONN_evm.TU.Sc2ySwM_117.2849 Anthoceros agrestis HOM05D006254 ORTHO05D007409 8.7e-56 222.2 375 34.7
Haze_25432 Corylus avellana HOM05D006254 ORTHO05D007409 4.8e-46 189.9 280 39.6
Haze_25431 Corylus avellana HOM05D006254 ORTHO05D007409 3.1e-45 187.2 253 41.5
ATR0584G026 Amborella trichopoda HOM05D006254 ORTHO05D007409 3.7e-38 163.7 160 47.5
AagrBONN_evm.TU.Sc2ySwM_228.4097 Anthoceros agrestis HOM05D006254 ORTHO05D007409 7.7e-36 156.0 336 30.7
Duzib264G1273 Durio zibethinus HOM05D006254 ORTHO05D007409 3.6e-33 147.1 80 77.5
SEGI_09568 Sequoiadendron giganteum HOM05D006254 ORTHO05D007409 1.8e-32 144.8 266 33.8
RcHm_v2.0_Chr2g0157061 Rosa chinensis HOM05D006254 ORTHO05D007409 3.0e-32 144.1 94 68.1
Nn1g08418 Nelumbo nucifera HOM05D006254 ORTHO05D007409 4.1e-29 133.7 87 65.5
CBR_g38543 Chara braunii HOM05D006254 ORTHO05D007409 5.9e-28 129.8 556 24.5
Actinidia38917 Actinidia chinensis HOM05D006254 ORTHO05D007409 1.1e-26 125.6 148 51.4
GSVIVG01038034001 Vitis vinifera HOM05D001605 ORTHO05D007409 2.1e-25 121.3 68 75.0
BolC4t22792H Brassica oleracea HOM05D006254 ORTHO05D007409 2.7e-25 120.9 137 46.0
MD11G1077000 Malus domestica HOM05D006254 ORTHO05D007409 2.3e-24 117.9 107 53.3
MD11G1077800 Malus domestica HOM05D006254 ORTHO05D007409 5.2e-24 116.7 68 75.0
HanXRQChr02g0035161 Helianthus annuus HOM05D006254 ORTHO05D007409 4.1e-21 107.1 110 55.5
Glyma.08G005450 Glycine max HOM05D006254 ORTHO05D007409 7.2e-18 96.3 67 62.7
ClCG04G002460 Citrullus lanatus HOM05D006254 ORTHO05D007409 9.5e-18 95.9 100 51.0
PSO170G1462 Papaver somniferum HOM05D006254 ORTHO05D007409 4.0e-16 90.5 115 43.5
AagrBONN_evm.TU.Sc2ySwM_340.558 Anthoceros agrestis HOM05D002405 ORTHO05D002483 1.2e-15 89.0 109 37.6
AagrBONN_evm.TU.Sc2ySwM_228.4094 Anthoceros agrestis HOM05D006254 ORTHO05D007409 1.5e-15 88.6 210 28.6
HanXRQChr13g0399511 Helianthus annuus HOM05D006254 ORTHO05D007409 7.5e-15 86.3 98 53.1
Actinidia38918 Actinidia chinensis HOM05D006254 ORTHO05D007409 1.2e-12 79.0 43 79.1
arahy.Tifrunner.gnm1.ann1.SX6F5A Arachis hypogaea HOM05D006254 ORTHO05D007409 3.8e-11 73.9 87 46.0
BolC4t22791H Brassica oleracea HOM05D006254 ORTHO05D007409 2.5e-10 71.2 54 55.6


User provided reference genes

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