Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g20890 Coffea canephora HOM05D006558 ORTHO05D008424 0.0e+00 1411.4 708 100.0
SGA_v2.0_scaffold232G43518 Striga asiatica HOM05D006558 ORTHO05D008424 2.7e-228 795.8 712 56.9
TAR633G1807 Trochodendron aralioides HOM05D006558 ORTHO05D008424 4.6e-228 795.0 714 56.2
QL04p014186 Quercus lobata HOM05D006558 ORTHO05D008424 3.9e-227 792.0 708 55.9
Actinidia06260 Actinidia chinensis HOM05D006558 ORTHO05D008424 1.8e-224 783.1 710 57.5
Prupe.2G031500 Prunus persica HOM05D006558 ORTHO05D008424 4.4e-223 778.5 712 55.9
CiPaw.13G011700 Carya illinoinensis HOM05D006558 ORTHO05D008424 6.4e-222 774.6 706 56.8
Peaxi162Scf00516g00328 Petunia axillaris HOM05D006558 ORTHO05D008424 6.4e-222 774.6 702 56.8
Oeu006113.1 Olea europaea HOM05D006558 ORTHO05D008424 1.2e-220 770.4 706 55.5
Nitab4.5_0002530g0080 Nicotiana tabacum HOM05D006558 ORTHO05D008424 1.6e-217 760.0 706 56.4
GSVIVG01000827001 Vitis vinifera HOM05D006558 ORTHO05D008424 2.8e-217 759.2 712 55.2
Sopen03g028230 Solanum pennellii HOM05D006558 ORTHO05D008424 3.1e-216 755.7 706 56.2
Rhsim07G0065000 Rhododendron simsii HOM05D006558 ORTHO05D008424 1.5e-215 753.4 765 53.5
FvH4_7g02620 Fragaria vesca HOM05D006558 ORTHO05D008424 3.4e-215 752.3 709 54.0
CAN.G732.14 Capsicum annuum HOM05D006558 ORTHO05D008424 9.9e-215 750.7 707 55.2
Solyc03g097460.3 Solanum lycopersicum HOM05D006558 ORTHO05D008424 1.3e-214 750.4 702 56.3
FAN01G2130 Fragaria x ananassa HOM05D006558 ORTHO05D008424 1.7e-214 750.0 724 53.2
Gohir.D06G185500 Gossypium hirsutum HOM05D006558 ORTHO05D008424 8.4e-214 747.7 707 53.6
Gorai.010G217100 Gossypium raimondii HOM05D006558 ORTHO05D008424 8.4e-214 747.7 708 53.8
TWI15G0624 Tripterygium wilfordii HOM05D006558 ORTHO05D008424 1.4e-213 746.9 712 52.8
Ciclev10033512m.g Citrus clementina HOM05D006558 ORTHO05D008424 7.1e-213 744.6 705 54.9
Manes.12G022900 Manihot esculenta HOM05D006558 ORTHO05D008424 2.7e-212 742.7 709 51.9
FAN03G0498 Fragaria x ananassa HOM05D006558 ORTHO05D008424 6.0e-212 741.5 724 52.3
Duzib106G1800 Durio zibethinus HOM05D006558 ORTHO05D008424 2.3e-211 739.6 688 54.1
RcHm_v2.0_Chr1g0321321 Rosa chinensis HOM05D006558 ORTHO05D008424 2.3e-211 739.6 710 53.2
Nitab4.5_0000021g1060 Nicotiana tabacum HOM05D006558 ORTHO05D008424 6.4e-206 721.5 745 52.6
Sc11g0006630 Simmondsia chinensis HOM05D006558 ORTHO05D008424 1.1e-205 720.7 707 53.6
Potri.004G236000 Populus trichocarpa HOM05D006558 ORTHO05D008424 2.1e-204 716.5 703 53.1
EL10Ac2g02834 Beta vulgaris HOM05D006558 ORTHO05D009340 3.9e-203 712.2 703 52.3
AUR62037214 Chenopodium quinoa HOM05D006558 ORTHO05D008424 5.6e-202 708.4 706 52.7
HanXRQChr02g0050141 Helianthus annuus HOM05D006558 ORTHO05D008424 1.6e-201 706.8 708 51.0
Phvul.002G285400 Phaseolus vulgaris HOM05D006558 ORTHO05D008424 2.1e-201 706.4 712 52.7
CANSAT78G0292 Cannabis sativa HOM05D006558 ORTHO05D008424 2.8e-201 706.1 706 52.3
Lj9C648T3 Lonicera japonica HOM05D006558 ORTHO05D008424 1.4e-200 703.7 674 53.9
Psat5g217480 Pisum sativum HOM05D006558 ORTHO05D008424 6.9e-200 701.4 710 52.3
AUR62026839 Chenopodium quinoa HOM05D006558 ORTHO05D008424 2.6e-199 699.5 706 51.6
CANSAT78G2064 Cannabis sativa HOM05D006558 ORTHO05D008424 4.5e-199 698.7 706 51.6
Lj3g0026268 Lotus japonicus HOM05D006558 ORTHO05D008424 7.6e-199 698.0 722 52.1
Nn7g37154 Nelumbo nucifera HOM05D006558 ORTHO05D008424 1.0e-198 697.6 719 51.6
ECA248G1764 Erigeron canadensis HOM05D006558 ORTHO05D008424 3.8e-198 695.7 706 50.6
Glyma.11G153500 Glycine max HOM05D006558 ORTHO05D008424 1.6e-196 690.3 712 51.4
Ca_25408_v3 Cicer arietinum L. HOM05D006558 ORTHO05D008424 2.7e-196 689.5 706 51.7
Lalb_Chr25g0282291 Lupinus albus HOM05D006558 ORTHO05D008424 2.7e-196 689.5 711 51.8
TPR.G9868 Trifolium pratense HOM05D006558 ORTHO05D008424 3.5e-196 689.1 702 51.0
VMungo0251G1905 Vigna mungo HOM05D006558 ORTHO05D008424 7.9e-196 688.0 712 51.4
MELO3C016629.2 Cucumis melo HOM05D006558 ORTHO05D008424 7.4e-194 681.4 715 50.5
MBI13_g29518_MAGBIO Magnolia biondii HOM05D006558 ORTHO05D008424 7.4e-194 681.4 711 49.8
CsaV3_5G011280 Cucumis sativus L. HOM05D006558 ORTHO05D008424 3.7e-193 679.1 713 50.5
THA.LOC104826716 Tarenaya hassleriana HOM05D006558 ORTHO05D008424 8.2e-193 677.9 712 49.3
Aqoxy2G03825 Aquilegia oxysepala HOM05D006558 ORTHO05D008424 2.0e-191 673.3 712 49.2
Aqoxy5G01848 Aquilegia oxysepala HOM05D006558 ORTHO05D008424 4.2e-189 665.6 709 48.8
AL3G18860 Arabidopsis lyrata HOM05D006558 ORTHO05D008424 5.5e-189 665.2 709 47.5
Sp3g06440 Schrenkiella parvula HOM05D006558 ORTHO05D008424 6.1e-188 661.8 710 47.2
PGR031G1286 Punica granatum HOM05D006558 ORTHO05D008424 4.8e-185 652.1 715 47.8
AT3G07530 Arabidopsis thaliana HOM05D006558 ORTHO05D008424 1.1e-184 651.0 709 46.8
Aa31LG10G8390 Aethionema arabicum HOM05D006558 ORTHO05D008424 2.4e-184 649.8 713 47.4
Haze_03062 Corylus avellana HOM05D006558 ORTHO05D008424 2.6e-183 646.4 617 55.3
Sed0005595 Sechium edule HOM05D006558 ORTHO05D008424 1.0e-182 644.4 715 48.4
Thhalv10020176m.g Eutrema salsugineum HOM05D006558 ORTHO05D008424 1.3e-182 644.0 709 46.1
Dinv00935 Davidia involucrata HOM05D006558 ORTHO05D008424 5.0e-182 642.1 591 56.7
SHI03978 Sapria himalayana HOM05D006558 ORTHO05D005892 2.7e-180 636.3 709 46.5
DCAR_010372 Daucus carota HOM05D006558 ORTHO05D008424 1.3e-177 627.5 519 59.9
Ca_25460_v3 Cicer arietinum L. HOM05D006558 ORTHO05D008424 2.6e-175 619.8 671 50.5
Carub.0003s0708 Capsella rubella HOM05D006558 ORTHO05D008424 5.9e-175 618.6 709 45.1
Lsat_1_v5_gn_1_114420 Lactuca sativa HOM05D006558 ORTHO05D008424 2.2e-174 616.7 704 46.7
BolC5t34633H Brassica oleracea HOM05D006558 ORTHO05D008424 3.8e-174 615.9 721 44.9
BraA05t22799Z Brassica rapa HOM05D006558 ORTHO05D008424 3.8e-174 615.9 722 44.9
C05p59790 Brassica napus HOM05D006558 ORTHO05D008424 3.0e-171 606.3 691 45.7
A05p40680 Brassica napus HOM05D006558 ORTHO05D008424 1.7e-169 600.5 692 45.7
BcaC05g29545 Brassica carinata HOM05D006558 ORTHO05D008424 1.8e-168 597.0 709 44.4
Ah.10g030940 Amaranthus hybridus HOM05D006558 ORTHO05D008424 2.4e-168 596.7 619 50.9
HPP92_012099 Vanilla planifolia HOM05D006558 ORTHO05D008424 1.4e-163 580.9 707 45.0
PSO675G8563 Papaver somniferum HOM05D006558 ORTHO05D008424 3.3e-162 576.2 710 45.9
Psat5g217880 Pisum sativum HOM05D006558 ORTHO05D008424 9.7e-162 574.7 519 55.5
arahy.Tifrunner.gnm1.ann1.898F3G Arachis hypogaea HOM05D006558 ORTHO05D008424 3.7e-161 572.8 684 44.7
Migut.K00935 Erythranthe guttata HOM05D006558 ORTHO05D008424 2.4e-160 570.1 616 51.0
Dinv09252 Davidia involucrata HOM05D006558 ORTHO05D008424 5.9e-159 565.5 531 55.9
Atru.chr11.2434 Acer truncatum HOM05D006558 ORTHO05D008424 5.2e-155 552.4 469 57.6
CARHR082190 Cardamine hirsuta HOM05D006558 ORTHO05D008424 1.9e-149 533.9 519 50.7
Thecc.10G170400 Theobroma cacao HOM05D006558 ORTHO05D008424 5.7e-146 522.3 454 56.6
Cpa.g.sc96.50 Carica papaya HOM05D006558 ORTHO05D008424 1.6e-143 514.2 478 54.0
unitig_32.g11142 Utricularia gibba HOM05D006558 ORTHO05D008424 7.3e-141 505.4 631 44.8
PGSC0003DMG400031735 Solanum tuberosum HOM05D006558 ORTHO05D008424 4.0e-139 499.6 493 54.2
vmacro13739 Vaccinium macrocarpon HOM05D006558 ORTHO05D008424 2.3e-134 483.8 477 54.7
MD00G1214500 Malus domestica HOM05D006558 ORTHO05D008424 8.6e-134 481.9 410 57.8
Sabra01G0180400 Salix brachista HOM05D006558 ORTHO05D008424 1.5e-130 471.1 452 53.8
Hund15718 Selenicereus undatus HOM05D006558 ORTHO05D008424 8.9e-123 445.3 646 41.6
arahy.Tifrunner.gnm1.ann1.S73JQ5 Arachis hypogaea HOM05D006558 ORTHO05D008424 2.6e-122 443.7 560 42.0
Medtr3g019010 Medicago truncatula HOM05D006558 ORTHO05D008424 1.1e-112 411.8 536 45.0
Gohir.A06G175900 Gossypium hirsutum HOM05D006558 ORTHO05D008424 3.3e-109 400.2 432 48.8
ATR1093G023 Amborella trichopoda HOM05D006558 ORTHO05D008424 4.2e-104 383.3 551 39.4
Zm00001eb143980 Zea mays HOM05D006558 ORTHO05D008424 9.3e-104 382.1 493 43.2
CDE05G1491 Ceratophyllum demersum HOM05D006558 ORTHO05D008424 1.4e-99 368.2 677 35.3
AL908U10010 Arabidopsis lyrata HOM05D006558 ORTHO05D008424 6.7e-94 349.4 377 47.2
Mapoly0001s0524 Marchantia polymorpha HOM05D006558 ORTHO05D008424 2.2e-89 334.3 844 31.4
SMO229G0006 Selaginella moellendorffii HOM05D006558 ORTHO05D008424 2.9e-81 307.4 705 29.9
SMO144G0043 Selaginella moellendorffii HOM05D006558 ORTHO05D008424 3.8e-81 307.0 705 29.9
AagrBONN_evm.TU.Sc2ySwM_228.965 Anthoceros agrestis HOM05D006558 ORTHO05D008424 6.5e-81 306.2 775 29.3
Gohir.A06G175902 Gossypium hirsutum HOM05D006558 ORTHO05D008424 9.3e-80 302.4 241 59.8
Pp3c9_4730 Physcomitrium patens HOM05D006558 ORTHO05D008424 1.9e-77 294.7 842 27.8
Eucgr.H05132 Eucalyptus grandis HOM05D006558 ORTHO05D008424 8.2e-76 289.3 691 31.0
COL.COLO4_35437 Corchorus olitorius HOM05D006558 ORTHO05D008424 1.4e-72 278.5 597 31.7
Atru.chr11.2476 Acer truncatum HOM05D006558 ORTHO05D008424 2.7e-71 274.2 186 66.1
MD07G1035100 Malus domestica HOM05D006558 ORTHO05D008424 1.9e-69 268.1 208 62.5
SEGI_06522 Sequoiadendron giganteum HOM05D006558 ORTHO05D008424 2.2e-68 264.6 380 40.0
Cc02_g29630 Coffea canephora HOM05D006558 ORTHO05D008424 1.4e-54 218.8 129 82.9
Eucgr.H05138 Eucalyptus grandis HOM05D006558 ORTHO05D008424 2.6e-50 204.5 319 38.6
Cpa.g.sc96.48 Carica papaya HOM05D006558 ORTHO05D008424 3.8e-41 174.1 215 45.6
Eucgr.H05129 Eucalyptus grandis HOM05D006558 ORTHO05D008424 4.7e-39 167.2 146 52.7
SEGI_00327 Sequoiadendron giganteum HOM05D006558 ORTHO05D008424 4.0e-38 164.1 164 47.0
Atru.chr11.2433 Acer truncatum HOM05D006558 ORTHO05D008424 1.9e-32 145.2 145 53.1
DCAR_010374 Daucus carota HOM05D006558 ORTHO05D008424 5.2e-30 137.1 183 42.6
Os03g0243200 Oryza sativa ssp. japonica HOM05D006558 ORTHO05D008424 2.6e-29 134.8 191 38.2
Medtr3g019025 Medicago truncatula HOM05D006558 ORTHO05D008424 2.2e-28 131.7 90 65.6
SGA_v2.0_scaffold2G00943 Striga asiatica HOM05D006558 ORTHO05D008424 2.8e-28 131.3 190 43.7
CBR_g72661 Chara braunii HOM05D000019 ORTHO05D000353 2.4e-27 128.3 305 31.1
MD00G1214400 Malus domestica HOM05D006558 ORTHO05D008424 2.9e-25 121.3 109 55.0
SEGI_36037 Sequoiadendron giganteum HOM05D006558 ORTHO05D008424 9.2e-19 99.8 242 28.9
CAN.G261.15 Capsicum annuum HOM05D003152 ORTHO05D034019 6.6e-17 93.6 73 61.6
MD07G1035200 Malus domestica HOM05D006558 ORTHO05D008424 1.2e-15 89.4 127 40.9
Ca_02010_v3 Cicer arietinum L. HOM05D006558 ORTHO05D008424 2.6e-13 81.6 58 60.3
Medtr3g019030 Medicago truncatula HOM05D006558 ORTHO05D034019 4.9e-12 77.4 43 72.1
Solyc05g150129.1 Solanum lycopersicum HOM05D006558 ORTHO05D008424 1.3e-09 69.3 63 49.2
Sopen05g017900 Solanum pennellii HOM05D028470 ORTHO05D037706 3.9e-09 67.8 88 39.8
Rhsim12G0031700 Rhododendron simsii HOM05D000017 ORTHO05D000013 6.6e-09 67.0 67 56.7
Eucgr.K00275 Eucalyptus grandis HOM05D002159 ORTHO05D005625 1.2e-07 62.8 408 23.0
CAN.G1175.3 Capsicum annuum HOM05D002159 ORTHO05D005625 8.1e-07 60.1 437 20.8
Nn7g37167 Nelumbo nucifera HOM05D006558 ORTHO05D008424 8.1e-07 60.1 52 57.7
Nitab4.5_0000084g0030 Nicotiana tabacum HOM05D002159 ORTHO05D005625 1.1e-06 59.7 437 21.7
Nitab4.5_0004439g0160 Nicotiana tabacum HOM05D002159 ORTHO05D005625 1.8e-06 58.9 446 21.1
MBI08_g18916_MAGBIO Magnolia biondii HOM05D000017 ORTHO05D000013 5.2e-06 57.4 67 46.3


User provided reference genes

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