Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g20650 Coffea canephora HOM05D001176 ORTHO05D007019 1.3e-249 865.9 435 100.0
Cc08_g05630 Coffea canephora HOM05D001176 ORTHO05D007019 2.5e-128 463.0 443 61.2
Nitab4.5_0000030g0410 Nicotiana tabacum HOM05D001176 ORTHO05D007019 1.2e-106 391.0 434 54.4
PGSC0003DMG400001956 Solanum tuberosum HOM05D001176 ORTHO05D007019 2.1e-106 390.2 438 54.1
MSTRG.25741 Avicennia marina HOM05D001176 ORTHO05D007019 3.0e-105 386.3 434 53.5
Oeu014108.2 Olea europaea HOM05D001176 ORTHO05D007019 8.8e-105 384.8 442 52.5
Solyc08g075440.4 Solanum lycopersicum HOM05D001176 ORTHO05D007019 1.1e-104 384.4 436 53.7
CSS0027781 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D007019 2.6e-104 383.3 432 53.7
Sopen08g024070 Solanum pennellii HOM05D001176 ORTHO05D007019 2.6e-104 383.3 436 53.7
SalBow4G1488 Salvia bowleyana HOM05D001176 ORTHO05D007019 4.4e-104 382.5 426 53.5
Peaxi162Scf00193g00811 Petunia axillaris HOM05D001176 ORTHO05D007019 5.7e-104 382.1 421 54.6
Nitab4.5_0001333g0050 Nicotiana tabacum HOM05D001176 ORTHO05D007019 3.7e-103 379.4 432 53.0
Rhsim11G0036600 Rhododendron simsii HOM05D001176 ORTHO05D007019 3.7e-103 379.4 432 53.9
TAR375G1104 Trochodendron aralioides HOM05D001176 ORTHO05D007019 3.7e-103 379.4 431 52.2
Duzib205G1840 Durio zibethinus HOM05D001176 ORTHO05D007019 1.1e-102 377.9 431 54.1
Migut.A00530 Erythranthe guttata HOM05D001176 ORTHO05D007019 1.1e-102 377.9 421 54.6
Oeu039635.2 Olea europaea HOM05D001176 ORTHO05D007019 2.4e-102 376.7 476 50.8
CAN.G930.8 Capsicum annuum HOM05D001176 ORTHO05D007019 3.1e-102 376.3 439 53.1
GSVIVG01013198001 Vitis vinifera HOM05D001176 ORTHO05D007019 9.1e-102 374.8 421 55.3
Eucgr.D02557 Eucalyptus grandis HOM05D001176 ORTHO05D007019 1.2e-101 374.4 436 51.4
Atru.chr8.2633 Acer truncatum HOM05D001176 ORTHO05D007019 2.6e-101 373.2 430 54.4
MBI04_g37458_MAGBIO Magnolia biondii HOM05D001176 ORTHO05D007019 7.7e-101 371.7 433 50.3
CiPaw.11G075700 Carya illinoinensis HOM05D001176 ORTHO05D007019 1.3e-100 370.9 436 54.8
Thecc.03G318700 Theobroma cacao HOM05D001176 ORTHO05D007019 1.7e-100 370.5 431 53.8
Lj9C202G6 Lonicera japonica HOM05D001176 ORTHO05D007019 2.2e-100 370.2 423 52.7
ECA240G2428 Erigeron canadensis HOM05D001176 ORTHO05D007019 2.9e-100 369.8 428 52.3
HanXRQChr03g0068151 Helianthus annuus HOM05D001176 ORTHO05D007019 3.8e-100 369.4 429 52.0
QL12p003889 Quercus lobata HOM05D001176 ORTHO05D007019 3.8e-100 369.4 426 52.6
Ciclev10011152m.g Citrus clementina HOM05D001176 ORTHO05D007019 8.5e-100 368.2 426 53.1
Prupe.1G077200 Prunus persica HOM05D001176 ORTHO05D007019 1.1e-99 367.9 436 54.4
Gorai.004G178200 Gossypium raimondii HOM05D001176 ORTHO05D007019 1.5e-99 367.5 420 54.3
SGA_v2.0_scaffold96G29093 Striga asiatica HOM05D001176 ORTHO05D007019 1.9e-99 367.1 430 51.9
THA.LOC104798522 Tarenaya hassleriana HOM05D001176 ORTHO05D007019 2.5e-99 366.7 430 51.4
MD13G1243800 Malus domestica HOM05D001176 ORTHO05D007019 3.2e-99 366.3 432 51.6
Gohir.D08G170800 Gossypium hirsutum HOM05D001176 ORTHO05D007019 4.2e-99 365.9 420 54.3
PSO732G0580 Papaver somniferum HOM05D001176 ORTHO05D007019 9.4e-99 364.8 433 52.4
Lalb_Chr16g0380331 Lupinus albus HOM05D001176 ORTHO05D007019 1.2e-98 364.4 427 52.9
Potri.004G236600 Populus trichocarpa HOM05D001176 ORTHO05D007019 1.6e-98 364.0 436 53.2
DCAR_001483 Daucus carota HOM05D001176 ORTHO05D007019 2.1e-98 363.6 430 52.1
Gohir.A08G149700 Gossypium hirsutum HOM05D001176 ORTHO05D007019 2.7e-98 363.2 433 52.7
Lalb_Chr09g0324961 Lupinus albus HOM05D001176 ORTHO05D007019 3.6e-98 362.8 423 53.9
Manes.15G189800 Manihot esculenta HOM05D001176 ORTHO05D007019 8.0e-98 361.7 439 51.3
PGR031G2625 Punica granatum HOM05D001176 ORTHO05D007019 8.0e-98 361.7 438 50.9
TWI79G0428 Tripterygium wilfordii HOM05D001176 ORTHO05D007019 1.0e-97 361.3 421 54.2
COL.COLO4_11286 Corchorus olitorius HOM05D001176 ORTHO05D007019 1.4e-97 360.9 431 52.7
RcHm_v2.0_Chr6g0304421 Rosa chinensis HOM05D001176 ORTHO05D007019 1.4e-97 360.9 436 52.1
Carub.0001s3008 Capsella rubella HOM05D001176 ORTHO05D007019 2.3e-97 360.1 417 53.0
CDE04G2738 Ceratophyllum demersum HOM05D001176 ORTHO05D007019 3.0e-97 359.8 420 51.4
PSO675G7478 Papaver somniferum HOM05D001176 ORTHO05D007019 5.2e-97 359.0 433 52.0
Psat2g146720 Pisum sativum HOM05D001176 ORTHO05D007019 5.2e-97 359.0 433 51.7
Thhalv10006980m.g Eutrema salsugineum HOM05D001176 ORTHO05D007019 6.7e-97 358.6 420 51.2
MELO3C010519.2 Cucumis melo HOM05D001176 ORTHO05D007019 1.5e-96 357.5 438 50.5
CsaV3_4G027950 Cucumis sativus L. HOM05D001176 ORTHO05D007019 2.6e-96 356.7 438 50.2
Glyma.11G090100 Glycine max HOM05D001176 ORTHO05D007019 2.6e-96 356.7 433 51.7
Haze_02517 Corylus avellana HOM05D001176 ORTHO05D007019 3.3e-96 356.3 473 48.6
Gohir.D08G170700 Gossypium hirsutum HOM05D001176 ORTHO05D007019 3.3e-96 356.3 418 53.1
Sp1g27470 Schrenkiella parvula HOM05D001176 ORTHO05D007019 4.4e-96 355.9 422 51.7
BcaC05g27192 Brassica carinata HOM05D001176 ORTHO05D007019 5.7e-96 355.5 421 51.1
A09p34570 Brassica napus HOM05D001176 ORTHO05D007019 5.7e-96 355.5 421 51.1
BolC5t31821H Brassica oleracea HOM05D001176 ORTHO05D007019 5.7e-96 355.5 421 51.1
BraA09t38996Z Brassica rapa HOM05D001176 ORTHO05D007019 5.7e-96 355.5 421 51.1
C05p30980 Brassica napus HOM05D001176 ORTHO05D007019 7.4e-96 355.1 421 50.6
CARHR031080 Cardamine hirsuta HOM05D001176 ORTHO05D007019 7.4e-96 355.1 421 51.3
FAN20G0920 Fragaria x ananassa HOM05D001176 ORTHO05D007019 9.7e-96 354.8 434 51.8
ATR0665G266 Amborella trichopoda HOM05D001176 ORTHO05D007019 1.7e-95 354.0 425 50.6
BcaB07g32825 Brassica carinata HOM05D001176 ORTHO05D007019 1.7e-95 354.0 421 50.8
TPR.G8989 Trifolium pratense HOM05D001176 ORTHO05D007019 2.2e-95 353.6 427 52.2
AT1G31780 Arabidopsis thaliana HOM05D001176 ORTHO05D007019 2.8e-95 353.2 421 51.3
AL1G45850 Arabidopsis lyrata HOM05D001176 ORTHO05D007019 3.7e-95 352.8 421 51.3
Sed0008250 Sechium edule HOM05D001176 ORTHO05D007019 3.7e-95 352.8 428 50.2
Sc21g0000770 Simmondsia chinensis HOM05D001176 ORTHO05D007019 3.7e-95 352.8 427 51.1
Ca_25034_v3 Cicer arietinum L. HOM05D001176 ORTHO05D007019 4.8e-95 352.4 427 51.5
Medtr5g025410 Medicago truncatula HOM05D001176 ORTHO05D007019 4.8e-95 352.4 427 52.2
AUR62017508 Chenopodium quinoa HOM05D001176 ORTHO05D007019 1.8e-94 350.5 434 50.9
Aa31LG2G14290 Aethionema arabicum HOM05D001176 ORTHO05D007019 4.1e-94 349.4 308 62.3
Lsat_1_v5_gn_9_124460 Lactuca sativa HOM05D001176 ORTHO05D007019 4.1e-94 349.4 451 49.4
FAN27G0701 Fragaria x ananassa HOM05D001176 ORTHO05D007019 1.2e-93 347.8 434 51.4
Sabra01G0180800 Salix brachista HOM05D001176 ORTHO05D007019 1.2e-93 347.8 425 51.5
Actinidia01255 Actinidia chinensis HOM05D001176 ORTHO05D007019 2.0e-93 347.1 311 62.4
EL10Ac5g11241 Beta vulgaris HOM05D001176 ORTHO05D007019 2.6e-93 346.7 427 51.1
Lj2g0027044 Lotus japonicus HOM05D001176 ORTHO05D007019 3.5e-93 346.3 420 51.7
Phvul.002G121100 Phaseolus vulgaris HOM05D001176 ORTHO05D007019 4.5e-93 345.9 419 50.4
Aqoxy7G00899 Aquilegia oxysepala HOM05D001176 ORTHO05D007019 1.0e-92 344.7 431 51.7
Cpa.g.sc90.31 Carica papaya HOM05D001176 ORTHO05D007019 1.7e-92 344.0 310 61.9
VMungo1215G1610 Vigna mungo HOM05D001176 ORTHO05D007019 1.9e-91 340.5 416 50.7
unitig_748.g7392 Utricularia gibba HOM05D001176 ORTHO05D007019 7.2e-91 338.6 433 48.3
Zm00001eb009310 Zea mays HOM05D001176 ORTHO05D007019 2.1e-90 337.0 417 49.4
Ah.05g167880 Amaranthus hybridus HOM05D001176 ORTHO05D007019 2.7e-90 336.7 425 48.7
HPP92_018761 Vanilla planifolia HOM05D001176 ORTHO05D007019 1.5e-88 330.9 315 58.4
ClCG11G016030 Citrullus lanatus HOM05D001176 ORTHO05D007019 7.5e-88 328.6 438 47.9
Nn1g09379 Nelumbo nucifera HOM05D001176 ORTHO05D007019 1.8e-86 323.9 429 48.0
FvH4_2g37280 Fragaria vesca HOM05D001176 ORTHO05D007019 2.4e-86 323.6 309 60.2
SEGI_32977 Sequoiadendron giganteum HOM05D001176 ORTHO05D007019 7.0e-86 322.0 444 47.1
FAN15G1703 Fragaria x ananassa HOM05D001176 ORTHO05D007019 3.0e-81 306.6 291 59.5
Mapoly0009s0222 Marchantia polymorpha HOM05D001176 ORTHO05D007019 4.4e-80 302.8 437 44.2
AUR62015049 Chenopodium quinoa HOM05D001176 ORTHO05D007019 3.7e-79 299.7 431 45.2
AagrBONN_evm.TU.Sc2ySwM_362.2951 Anthoceros agrestis HOM05D001176 ORTHO05D007019 5.2e-73 279.3 461 40.8
Pp3c2_23210 Physcomitrium patens HOM05D001176 ORTHO05D007019 8.3e-71 271.9 321 48.3
CSS0030107 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D007019 3.3e-67 260.0 234 60.7
SMO339G0033 Selaginella moellendorffii HOM05D001176 ORTHO05D007019 4.3e-67 259.6 278 53.2
MD13G1244000 Malus domestica HOM05D001176 ORTHO05D007019 3.2e-62 243.4 238 56.7
Dinv41809 Davidia involucrata HOM05D001176 ORTHO05D007019 1.2e-53 214.9 214 59.8
Cre13.g587750 Chlamydomonas reinhardtii HOM05D001176 ORTHO05D007019 1.8e-49 201.1 315 39.0
PRCOL_00001869 Prasinoderma coloniale HOM05D001176 ORTHO05D007019 1.2e-48 198.4 304 40.1
CBR_g61503 Chara braunii HOM05D001176 ORTHO05D007019 4.4e-48 196.4 243 45.7
MCO03G158 Micromonas commoda HOM05D001176 ORTHO05D007019 9.6e-43 178.7 319 37.9
Dinv41808 Davidia involucrata HOM05D001176 ORTHO05D007019 1.6e-26 124.8 84 73.8
Glyma.01G154501 Glycine max HOM05D001176 ORTHO05D007019 9.9e-24 115.5 100 61.0
CSS0012136 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D007019 6.9e-17 92.8 184 36.4
CSS0004945 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D007019 1.2e-16 92.0 184 37.0
Actinidia32787 Actinidia chinensis HOM05D001176 ORTHO05D007019 7.1e-14 82.8 56 67.9
MD13G1243900 Malus domestica HOM05D001176 ORTHO05D007019 2.1e-13 81.3 169 37.3
CBR_g61501 Chara braunii HOM05D001176 ORTHO05D007019 1.4e-09 68.6 55 60.0
Glyma.01G154551 Glycine max HOM05D001176 ORTHO05D214389 1.4e-09 68.6 115 42.6


User provided reference genes

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