Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g20440 Coffea canephora HOM05D003659 ORTHO05D004298 6.7e-69 263.8 130 100.0
Cc08_g06110 Coffea canephora HOM05D003659 ORTHO05D004298 7.7e-65 250.4 130 95.4
Cc10_g09910 Coffea canephora HOM05D003659 ORTHO05D004298 4.7e-62 241.1 127 92.9
Cc00_g05940 Coffea canephora HOM05D003659 ORTHO05D004298 5.2e-61 237.7 122 93.4
Cc04_g05030 Coffea canephora HOM05D003659 ORTHO05D004298 2.6e-60 235.3 117 97.4
Cc05_g03490 Coffea canephora HOM05D003659 ORTHO05D004298 1.8e-58 229.2 118 94.1
Cc10_g10650 Coffea canephora HOM05D003659 ORTHO05D004298 3.1e-58 228.4 133 87.2
Cc05_g01640 Coffea canephora HOM05D003659 ORTHO05D004298 2.9e-56 221.9 123 91.1
Actinidia25461 Actinidia chinensis HOM05D003659 ORTHO05D004298 1.6e-54 216.1 117 89.7
Oeu060128.1 Olea europaea HOM05D003659 ORTHO05D004298 3.6e-54 214.9 117 84.6
Actinidia18243 Actinidia chinensis HOM05D003659 ORTHO05D004298 1.0e-53 213.4 117 88.0
CSS0027457 Camellia sinensis var. sinensis HOM05D003659 ORTHO05D004298 5.2e-53 211.1 117 88.9
CSS0033149 Camellia sinensis var. sinensis HOM05D003659 ORTHO05D004298 5.2e-53 211.1 117 88.9
MSTRG.9405 Avicennia marina HOM05D003659 ORTHO05D004298 2.0e-52 209.1 117 83.8
vmacro19047 Vaccinium macrocarpon HOM05D003659 ORTHO05D004298 2.6e-52 208.8 117 85.5
HanXRQChr04g0098481 Helianthus annuus HOM05D003659 ORTHO05D004298 5.7e-52 207.6 118 81.4
MSTRG.22794 Avicennia marina HOM05D003659 ORTHO05D004298 7.5e-52 207.2 117 83.8
Migut.D01114 Erythranthe guttata HOM05D003659 ORTHO05D004298 7.5e-52 207.2 117 82.9
Migut.I00701 Erythranthe guttata HOM05D003659 ORTHO05D004298 9.8e-52 206.8 117 82.9
Rhsim08G0207200 Rhododendron simsii HOM05D003659 ORTHO05D004298 2.8e-51 205.3 117 83.8
Dinv23291 Davidia involucrata HOM05D003659 ORTHO05D004298 4.9e-51 204.5 120 83.3
Oeu027829.1 Olea europaea HOM05D003659 ORTHO05D004298 6.3e-51 204.1 117 82.1
Lsat_1_v5_gn_1_32141 Lactuca sativa HOM05D003659 ORTHO05D004298 1.1e-50 203.4 118 80.5
Oeu004335.5 Olea europaea HOM05D003659 ORTHO05D004298 1.4e-50 203.0 117 82.9
Hund06525 Selenicereus undatus HOM05D003659 ORTHO05D004298 1.4e-50 203.0 117 80.3
Ah.01g006880 Amaranthus hybridus HOM05D003659 ORTHO05D004298 1.8e-50 202.6 119 79.8
MSTRG.11175 Avicennia marina HOM05D003659 ORTHO05D004298 5.4e-50 201.1 117 81.2
Cc00_g06440 Coffea canephora HOM05D003659 ORTHO05D004298 5.4e-50 201.1 122 82.8
DCAR_021366 Daucus carota HOM05D003659 ORTHO05D004298 7.0e-50 200.7 122 80.3
AUR62030831 Chenopodium quinoa HOM05D003659 ORTHO05D004298 1.2e-49 199.9 119 80.7
Actinidia08946 Actinidia chinensis HOM05D003659 ORTHO05D004298 2.0e-49 199.1 117 81.2
ECA247G2368 Erigeron canadensis HOM05D003659 ORTHO05D004298 2.0e-49 199.1 121 76.9
Lsat_1_v5_gn_5_8201 Lactuca sativa HOM05D003659 ORTHO05D004298 1.0e-48 196.8 118 80.5
Peaxi162Scf00332g00435 Petunia axillaris HOM05D003659 ORTHO05D004298 1.0e-48 196.8 117 82.1
AUR62026991 Chenopodium quinoa HOM05D003659 ORTHO05D004298 1.7e-48 196.1 117 79.5
EL10Ac9g22216 Beta vulgaris HOM05D003659 ORTHO05D004298 2.3e-48 195.7 119 77.3
ECA246G1998 Erigeron canadensis HOM05D003659 ORTHO05D004298 2.9e-48 195.3 125 75.2
Nitab4.5_0001454g0190 Nicotiana tabacum HOM05D003659 ORTHO05D004298 5.0e-48 194.5 117 80.3
CAN.G407.57 Capsicum annuum HOM05D003659 ORTHO05D004298 8.6e-48 193.7 117 78.6
PGSC0003DMG400014120 Solanum tuberosum HOM05D003659 ORTHO05D004298 8.6e-48 193.7 117 79.5
Hund00440 Selenicereus undatus HOM05D003659 ORTHO05D004298 1.9e-47 192.6 119 75.6
Cfa013072 Carpinus fangiana HOM05D003659 ORTHO05D004298 2.5e-47 192.2 120 79.2
Nn8g39829 Nelumbo nucifera HOM05D003659 ORTHO05D004298 2.5e-47 192.2 118 78.0
unitig_0.g1106 Utricularia gibba HOM05D003659 ORTHO05D004298 2.5e-47 192.2 117 75.2
GSVIVG01034217001 Vitis vinifera HOM05D003659 ORTHO05D004298 3.3e-47 191.8 118 78.8
QL02p019557 Quercus lobata HOM05D003659 ORTHO05D004298 4.3e-47 191.4 120 77.5
CiPaw.08G006800 Carya illinoinensis HOM05D003659 ORTHO05D004298 5.6e-47 191.0 119 78.2
Nitab4.5_0026787g0010 Nicotiana tabacum HOM05D003659 ORTHO05D004298 5.6e-47 191.0 117 78.6
Lj5A80T55 Lonicera japonica HOM05D003659 ORTHO05D004298 7.3e-47 190.7 118 78.0
Potri.006G263200 Populus trichocarpa HOM05D003659 ORTHO05D004298 7.3e-47 190.7 119 79.0
vmacro16858 Vaccinium macrocarpon HOM05D003659 ORTHO05D004298 1.2e-46 189.9 118 78.0
SGA_v2.0_scaffold5G02776 Striga asiatica HOM05D003659 ORTHO05D004298 1.6e-46 189.5 117 79.5
Rhsim12G0187700 Rhododendron simsii HOM05D003659 ORTHO05D004298 2.1e-46 189.1 118 78.0
TWI34G1103 Tripterygium wilfordii HOM05D003659 ORTHO05D004298 4.7e-46 188.0 120 75.0
Glyma.06G062900 Glycine max HOM05D003659 ORTHO05D004298 6.1e-46 187.6 121 76.0
Sc12g0008380 Simmondsia chinensis HOM05D003659 ORTHO05D004298 1.0e-45 186.8 119 74.8
Sabra06G0205400 Salix brachista HOM05D003659 ORTHO05D004298 1.8e-45 186.0 119 77.3
Solyc03g117020.4 Solanum lycopersicum HOM05D003659 ORTHO05D004298 2.3e-45 185.7 118 77.1
Sopen03g035920 Solanum pennellii HOM05D003659 ORTHO05D004298 2.3e-45 185.7 118 77.1
PSO170G6877 Papaver somniferum HOM05D003659 ORTHO05D004298 4.0e-45 184.9 122 76.2
Atru.chr7.2534 Acer truncatum HOM05D003659 ORTHO05D004298 5.2e-45 184.5 119 73.9
DCAR_025575 Daucus carota HOM05D003659 ORTHO05D004298 5.2e-45 184.5 119 75.6
Lalb_Chr23g0268261 Lupinus albus HOM05D003659 ORTHO05D004298 5.2e-45 184.5 123 73.2
ATR0739G101 Amborella trichopoda HOM05D003659 ORTHO05D004298 8.9e-45 183.7 118 75.4
Manes.16G128300 Manihot esculenta HOM05D003659 ORTHO05D004298 8.9e-45 183.7 123 75.6
PGR044G1948 Punica granatum HOM05D003659 ORTHO05D004298 1.5e-44 183.0 119 77.3
PSO017G1057 Papaver somniferum HOM05D003659 ORTHO05D004298 2.0e-44 182.6 122 74.6
TAR636G3496 Trochodendron aralioides HOM05D003659 ORTHO05D004298 2.0e-44 182.6 117 76.1
Aqoxy7G01595 Aquilegia oxysepala HOM05D003659 ORTHO05D004298 2.6e-44 182.2 121 76.9
HPP92_004679 Vanilla planifolia HOM05D003659 ORTHO05D004298 4.4e-44 181.4 119 72.3
Nn2g12325 Nelumbo nucifera HOM05D003659 ORTHO05D004298 5.8e-44 181.0 118 74.6
Aa31LG7G12130 Aethionema arabicum HOM05D003659 ORTHO05D004298 7.5e-44 180.6 119 73.1
RcHm_v2.0_Chr6g0299581 Rosa chinensis HOM05D003659 ORTHO05D004298 7.5e-44 180.6 117 73.5
TWI32G0040 Tripterygium wilfordii HOM05D003659 ORTHO05D004298 9.8e-44 180.3 120 73.3
ClCG05G016430 Citrullus lanatus HOM05D003659 ORTHO05D004298 1.7e-43 179.5 119 77.3
FvH4_2g40990 Fragaria vesca HOM05D003659 ORTHO05D004298 1.7e-43 179.5 117 72.6
TAR625G1310 Trochodendron aralioides HOM05D003659 ORTHO05D004298 1.7e-43 179.5 118 73.7
unitig_61.g26227 Utricularia gibba HOM05D003659 ORTHO05D004298 1.7e-43 179.5 116 70.7
CsaV3_4G036690 Cucumis sativus L. HOM05D003659 ORTHO05D004298 2.2e-43 179.1 119 73.9
MD15G1038400 Malus domestica HOM05D003659 ORTHO05D004298 2.2e-43 179.1 117 73.5
SEGI_01700 Sequoiadendron giganteum HOM05D003659 ORTHO05D004298 2.2e-43 179.1 119 73.1
Eucgr.C02663 Eucalyptus grandis HOM05D003659 ORTHO05D004298 2.9e-43 178.7 119 74.8
THA.LOC104803632 Tarenaya hassleriana HOM05D003659 ORTHO05D004298 2.9e-43 178.7 121 74.4
GSVIVG01035892001 Vitis vinifera HOM05D003659 ORTHO05D004298 2.9e-43 178.7 119 74.8
FAN20G3050 Fragaria x ananassa HOM05D003659 ORTHO05D004298 3.7e-43 178.3 117 73.5
HanXRQChr05g0153781 Helianthus annuus HOM05D003659 ORTHO05D004298 3.7e-43 178.3 114 77.2
Thhalv10000317m.g Eutrema salsugineum HOM05D003659 ORTHO05D004298 4.9e-43 177.9 121 71.9
Manes.03G010100 Manihot esculenta HOM05D003659 ORTHO05D004298 4.9e-43 177.9 121 71.1
CARHR116580 Cardamine hirsuta HOM05D003659 ORTHO05D004298 6.4e-43 177.6 120 72.5
Cc08_g07620 Coffea canephora HOM05D003659 ORTHO05D004298 6.4e-43 177.6 85 97.6
Prupe.1G392400 Prunus persica HOM05D003659 ORTHO05D004298 6.4e-43 177.6 117 71.8
AT2G25110 Arabidopsis thaliana HOM05D003659 ORTHO05D004298 1.1e-42 176.8 120 72.5
BcaB06g28036 Brassica carinata HOM05D003659 ORTHO05D004298 1.4e-42 176.4 121 71.1
BcaC02g08370 Brassica carinata HOM05D003659 ORTHO05D004298 1.9e-42 176.0 120 71.7
C04p55110 Brassica napus HOM05D003659 ORTHO05D004298 1.9e-42 176.0 120 71.7
BolC4t27050H Brassica oleracea HOM05D003659 ORTHO05D004298 1.9e-42 176.0 120 71.7
BolC8t51458H Brassica oleracea HOM05D003659 ORTHO05D004298 1.9e-42 176.0 121 71.1
FAN27G2887 Fragaria x ananassa HOM05D003659 ORTHO05D004298 1.9e-42 176.0 117 72.6
AL4G16270 Arabidopsis lyrata HOM05D003659 ORTHO05D004298 2.4e-42 175.6 120 70.8
Carub.0004s0471 Capsella rubella HOM05D003659 ORTHO05D004298 2.4e-42 175.6 120 72.5
A04p19520 Brassica napus HOM05D003659 ORTHO05D004298 3.2e-42 175.3 120 72.5
BraA04t17546Z Brassica rapa HOM05D003659 ORTHO05D004298 3.2e-42 175.3 120 72.5
Ciclev10009450m.g Citrus clementina HOM05D003659 ORTHO05D004298 3.2e-42 175.3 120 72.5
TAR625G1087 Trochodendron aralioides HOM05D003659 ORTHO05D004298 3.2e-42 175.3 118 72.9
Sp4g04120 Schrenkiella parvula HOM05D003659 ORTHO05D004298 4.1e-42 174.9 120 70.8
Actinidia36884 Actinidia chinensis HOM05D003659 ORTHO05D004298 5.4e-42 174.5 106 78.3
HanXRQChr08g0235851 Helianthus annuus HOM05D003659 ORTHO05D004298 5.4e-42 174.5 118 72.0
Haze_21430 Corylus avellana HOM05D003659 ORTHO05D004298 7.0e-42 174.1 120 72.5
MELO3C016972.2 Cucumis melo HOM05D003659 ORTHO05D004298 1.2e-41 173.3 119 73.1
Lsat_1_v5_gn_4_87041 Lactuca sativa HOM05D003659 ORTHO05D004298 2.0e-41 172.6 119 69.7
Thecc.09G017100 Theobroma cacao HOM05D003659 ORTHO05D004298 2.0e-41 172.6 120 69.2
arahy.Tifrunner.gnm1.ann1.48QDBJ Arachis hypogaea HOM05D003659 ORTHO05D004298 3.5e-41 171.8 125 71.2
arahy.Tifrunner.gnm1.ann1.85LDPV Arachis hypogaea HOM05D003659 ORTHO05D004298 3.5e-41 171.8 125 71.2
Sed0006058 Sechium edule HOM05D003659 ORTHO05D004298 6.0e-41 171.0 91 84.6
CSS0004565 Camellia sinensis var. sinensis HOM05D003659 ORTHO05D004298 1.3e-40 169.9 119 69.7
CSS0014874 Camellia sinensis var. sinensis HOM05D003659 ORTHO05D004298 1.3e-40 169.9 119 69.7
Os08g0278900 Oryza sativa ssp. japonica HOM05D003659 ORTHO05D004298 1.3e-40 169.9 120 70.0
TPR.G3109 Trifolium pratense HOM05D003659 ORTHO05D004298 2.3e-40 169.1 123 71.5
Lj9A494G39 Lonicera japonica HOM05D003659 ORTHO05D004298 3.0e-40 168.7 96 80.2
Cpa.g.sc127.19 Carica papaya HOM05D003659 ORTHO05D004298 5.0e-40 167.9 85 90.6
Gohir.A07G031500 Gossypium hirsutum HOM05D003659 ORTHO05D004298 6.6e-40 167.5 123 67.5
Gohir.D07G035300 Gossypium hirsutum HOM05D003659 ORTHO05D004298 6.6e-40 167.5 123 67.5
Gorai.001G037100 Gossypium raimondii HOM05D003659 ORTHO05D004298 6.6e-40 167.5 123 67.5
Psat5g032160 Pisum sativum HOM05D003659 ORTHO05D004298 8.6e-40 167.2 123 70.7
Duzib150G0849 Durio zibethinus HOM05D003659 ORTHO05D004298 1.1e-39 166.8 122 67.2
Gohir.A05G058400 Gossypium hirsutum HOM05D003659 ORTHO05D004298 1.1e-39 166.8 122 67.2
Gorai.009G061600 Gossypium raimondii HOM05D003659 ORTHO05D004298 1.1e-39 166.8 122 67.2
Potri.018G020700 Populus trichocarpa HOM05D003659 ORTHO05D004298 1.1e-39 166.8 123 66.7
SHI18485 Sapria himalayana HOM05D003659 ORTHO05D004298 1.1e-39 166.8 121 69.4
Duzib168G1659 Durio zibethinus HOM05D003659 ORTHO05D004298 4.3e-39 164.9 120 67.5
Glyma.04G061900 Glycine max HOM05D003659 ORTHO05D004298 7.3e-39 164.1 125 66.4
Gohir.D05G060500 Gossypium hirsutum HOM05D003659 ORTHO05D004298 7.3e-39 164.1 126 65.1
Lj1g0004529 Lotus japonicus HOM05D003659 ORTHO05D004298 9.5e-39 163.7 86 86.0
Os08g0440500 Oryza sativa ssp. japonica HOM05D003659 ORTHO05D004298 9.5e-39 163.7 120 67.5
CDE05G0949 Ceratophyllum demersum HOM05D003659 ORTHO05D004298 4.7e-38 161.4 86 83.7
Phvul.009G088100 Phaseolus vulgaris HOM05D003659 ORTHO05D004298 4.7e-38 161.4 84 85.7
Sed0005308 Sechium edule HOM05D003659 ORTHO05D004298 8.0e-38 160.6 87 82.8
Medtr3g106130 Medicago truncatula HOM05D003659 ORTHO05D004298 8.9e-37 157.1 143 61.5
arahy.Tifrunner.gnm1.ann1.7GH63I Arachis hypogaea HOM05D003659 ORTHO05D004298 2.0e-36 156.0 113 68.1
A09p55870 Brassica napus HOM05D003659 ORTHO05D004298 3.4e-36 155.2 121 62.8
BraA09t40990Z Brassica rapa HOM05D003659 ORTHO05D004298 3.4e-36 155.2 121 62.8
BcaC07g40890 Brassica carinata HOM05D003659 ORTHO05D004298 4.4e-36 154.8 121 62.8
C08p38860 Brassica napus HOM05D003659 ORTHO05D004298 4.4e-36 154.8 121 62.8
Zm00001eb179820 Zea mays HOM05D003659 ORTHO05D004298 5.8e-36 154.5 88 77.3
MD08G1057800 Malus domestica HOM05D003659 ORTHO05D004298 7.5e-36 154.1 85 80.0
Lalb_Chr08g0244391 Lupinus albus HOM05D003659 ORTHO05D004298 1.3e-35 153.3 123 65.0
Ah.16g104980 Amaranthus hybridus HOM05D003659 ORTHO05D004298 4.9e-35 151.4 102 68.6
Zm00001eb041170 Zea mays HOM05D003659 ORTHO05D004298 4.9e-35 151.4 88 73.9
arahy.Tifrunner.gnm1.ann1.Q7FMUW Arachis hypogaea HOM05D003659 ORTHO05D004298 8.3e-35 150.6 113 67.3
Cc00_g21920 Coffea canephora HOM05D003659 ORTHO05D004298 2.4e-34 149.1 80 88.8
CDE02G2060 Ceratophyllum demersum HOM05D003659 ORTHO05D004298 4.1e-34 148.3 75 89.3
SMO304G0007 Selaginella moellendorffii HOM05D003659 ORTHO05D004298 1.2e-33 146.7 116 62.9
Pp3c12_21450 Physcomitrium patens HOM05D003659 ORTHO05D004298 1.6e-33 146.4 118 59.3
HPP92_010392 Vanilla planifolia HOM05D003659 ORTHO05D004298 2.1e-33 146.0 94 70.2
SalBow7G4756 Salvia bowleyana HOM05D003659 ORTHO05D004298 3.5e-33 145.2 75 84.0
Dinv40986 Davidia involucrata HOM05D003659 ORTHO05D004298 4.6e-33 144.8 81 81.5
COL.COLO4_03628 Corchorus olitorius HOM05D003659 ORTHO05D004298 6.0e-33 144.4 75 86.7
Mapoly0146s0027 Marchantia polymorpha HOM05D003659 ORTHO05D004298 7.8e-33 144.1 92 66.3
Pp3c4_7140 Physcomitrium patens HOM05D003659 ORTHO05D004298 1.3e-32 143.3 115 58.3
Pp3c9_3320 Physcomitrium patens HOM05D003659 ORTHO05D004298 1.1e-29 133.7 118 57.6
SMO340G0294 Selaginella moellendorffii HOM05D003659 ORTHO05D004298 8.9e-29 130.6 85 71.8
CBR_g38858 Chara braunii HOM05D003659 ORTHO05D004298 1.2e-28 130.2 95 64.2
AUR62012468 Chenopodium quinoa HOM05D003659 ORTHO05D004298 5.4e-26 121.3 155 47.1
FvH4_3g15950 Fragaria vesca HOM05D003659 ORTHO05D004298 1.1e-23 113.6 80 68.8
HPP92_010427 Vanilla planifolia HOM05D003659 ORTHO05D004298 4.7e-22 108.2 94 57.4
AUR62031594 Chenopodium quinoa HOM05D003659 ORTHO05D004298 1.8e-21 106.3 94 56.4
MCO11G512 Micromonas commoda HOM05D003659 ORTHO05D004298 7.6e-20 100.9 90 53.3
Cre13.g571750 Chlamydomonas reinhardtii HOM05D003659 ORTHO05D004298 8.4e-19 97.4 102 46.1
FAN11G3099 Fragaria x ananassa HOM05D003659 ORTHO05D004298 1.1e-18 97.1 72 66.7
AagrBONN_evm.TU.Sc2ySwM_117.1898 Anthoceros agrestis HOM05D003659 ORTHO05D004298 3.2e-18 95.5 85 54.1
PRCOL_00006403 Prasinoderma coloniale HOM05D003659 ORTHO05D004298 2.1e-17 92.8 91 44.0
SHI37098 Sapria himalayana HOM05D003659 ORTHO05D004298 2.1e-09 66.2 59 50.8
arahy.Tifrunner.gnm1.ann1.K0Y0BK Arachis hypogaea HOM05D003659 ORTHO05D004298 3.3e-07 58.9 37 70.3
Cfa024390 Carpinus fangiana HOM05D003659 ORTHO05D125208 4.3e-07 58.5 121 33.1
SHI20750 Sapria himalayana HOM05D003659 ORTHO05D004298 1.6e-06 56.6 48 56.2


User provided reference genes

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