Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g20260 Coffea canephora HOM05D005440 ORTHO05D007314 1.7e-309 1065.1 517 100.0
CAN.G1156.52 Capsicum annuum HOM05D005440 ORTHO05D007314 2.1e-198 696.0 468 72.9
GSVIVG01026115001 Vitis vinifera HOM05D005440 ORTHO05D007314 5.2e-197 691.4 496 70.2
Hma1.2p1_1803F.1_g302990 Hydrangea macrophylla HOM05D005440 ORTHO05D007314 4.9e-195 684.9 495 69.9
Sopen05g034920 Solanum pennellii HOM05D005440 ORTHO05D007314 5.4e-194 681.4 473 70.8
Solyc05g056520.4 Solanum lycopersicum HOM05D005440 ORTHO05D007314 2.0e-193 679.5 473 70.8
CiPaw.04G136100 Carya illinoinensis HOM05D005440 ORTHO05D007314 8.6e-192 674.1 489 68.1
Prupe.3G188100 Prunus persica HOM05D005440 ORTHO05D007314 4.3e-191 671.8 488 68.9
Gorai.001G092600 Gossypium raimondii HOM05D005440 ORTHO05D007314 2.6e-188 662.5 477 69.0
TAR627G1033 Trochodendron aralioides HOM05D005440 ORTHO05D007314 2.6e-188 662.5 489 68.1
Duzib138G1709 Durio zibethinus HOM05D005440 ORTHO05D007314 4.4e-188 661.8 484 68.2
Gohir.A07G081000 Gossypium hirsutum HOM05D005440 ORTHO05D007314 1.7e-187 659.8 475 69.5
Atru.chr5.954 Acer truncatum HOM05D005440 ORTHO05D007314 3.7e-187 658.7 480 68.8
Ciclev10011552m.g Citrus clementina HOM05D005440 ORTHO05D007314 1.9e-186 656.4 478 70.7
Cfa023527 Carpinus fangiana HOM05D005440 ORTHO05D007314 3.2e-186 655.6 484 67.1
MSTRG.15262 Avicennia marina HOM05D005440 ORTHO05D007314 5.4e-186 654.8 484 67.6
Gohir.D07G086600 Gossypium hirsutum HOM05D005440 ORTHO05D007314 1.6e-185 653.3 480 68.1
Rhsim12G0014000 Rhododendron simsii HOM05D005440 ORTHO05D007314 1.6e-185 653.3 443 72.7
Migut.L00575 Erythranthe guttata HOM05D005440 ORTHO05D007314 2.1e-185 652.9 473 68.7
Potri.006G023400 Populus trichocarpa HOM05D005440 ORTHO05D007314 2.7e-185 652.5 479 70.1
CsaV3_4G032220 Cucumis sativus L. HOM05D005440 ORTHO05D007314 4.6e-185 651.7 486 67.9
Potri.016G021900 Populus trichocarpa HOM05D005440 ORTHO05D007314 6.0e-185 651.4 488 68.9
MD17G1127100 Malus domestica HOM05D005440 ORTHO05D007314 1.0e-184 650.6 472 68.4
MELO3C026396.2 Cucumis melo HOM05D005440 ORTHO05D007314 1.3e-184 650.2 486 68.1
Nn5g27478 Nelumbo nucifera HOM05D005440 ORTHO05D007314 2.3e-184 649.4 484 67.8
CSS0043590 Camellia sinensis var. sinensis HOM05D005440 ORTHO05D007314 1.1e-183 647.1 459 69.7
PGR004G2684 Punica granatum HOM05D005440 ORTHO05D007314 1.5e-183 646.7 468 67.9
TWI60G0164 Tripterygium wilfordii HOM05D005440 ORTHO05D007314 1.5e-183 646.7 471 69.0
RcHm_v2.0_Chr2g0153881 Rosa chinensis HOM05D005440 ORTHO05D007314 7.3e-183 644.4 474 69.6
Ca_16308_v3 Cicer arietinum L. HOM05D005440 ORTHO05D007314 1.2e-182 643.7 478 67.8
Lj6g0026846 Lotus japonicus HOM05D005440 ORTHO05D007314 1.2e-182 643.7 490 66.5
MD09G1136900 Malus domestica HOM05D005440 ORTHO05D007314 1.6e-182 643.3 476 68.1
TPR.G33572 Trifolium pratense HOM05D005440 ORTHO05D007314 1.6e-182 643.3 479 68.1
Duzib133G0846 Durio zibethinus HOM05D005440 ORTHO05D007314 3.6e-182 642.1 481 67.4
HanXRQChr15g0468881 Helianthus annuus HOM05D005440 ORTHO05D007314 8.1e-182 641.0 480 68.5
Phvul.006G001800 Phaseolus vulgaris HOM05D005440 ORTHO05D007314 1.1e-181 640.6 489 67.1
CANSAT64G0070 Cannabis sativa HOM05D005440 ORTHO05D007314 4.0e-181 638.6 484 68.2
Lalb_Chr24g0402811 Lupinus albus HOM05D005440 ORTHO05D007314 4.0e-181 638.6 482 66.2
THA.LOC104800970 Tarenaya hassleriana HOM05D005440 ORTHO05D007314 3.4e-180 635.6 493 65.7
Glyma.13G003900 Glycine max HOM05D005440 ORTHO05D007314 9.9e-180 634.0 484 66.7
Medtr3g081180 Medicago truncatula HOM05D005440 ORTHO05D007314 1.3e-179 633.6 475 67.4
Glyma.20G065600 Glycine max HOM05D005440 ORTHO05D007314 8.4e-179 630.9 485 65.6
Lalb_Chr22g0360841 Lupinus albus HOM05D005440 ORTHO05D007314 8.4e-179 630.9 477 67.1
FAN02G0818 Fragaria x ananassa HOM05D005440 ORTHO05D007314 1.9e-178 629.8 471 68.4
Eucgr.K01335 Eucalyptus grandis HOM05D005440 ORTHO05D007314 2.4e-178 629.4 522 63.0
PSO675G6996 Papaver somniferum HOM05D005440 ORTHO05D007314 3.2e-178 629.0 474 66.9
FvH4_6g39770 Fragaria vesca HOM05D005440 ORTHO05D007314 7.1e-178 627.9 468 69.0
Sed0022130 Sechium edule HOM05D005440 ORTHO05D007314 9.2e-178 627.5 491 64.0
Peaxi162Scf00525g00411 Petunia axillaris HOM05D005440 ORTHO05D007314 1.2e-177 627.1 490 66.7
THA.LOC104826162 Tarenaya hassleriana HOM05D005440 ORTHO05D007314 7.8e-177 624.4 487 64.9
FAN14G2598 Fragaria x ananassa HOM05D005440 ORTHO05D007314 8.6e-176 620.9 468 68.4
Manes.09G077000 Manihot esculenta HOM05D005440 ORTHO05D007314 1.9e-175 619.8 484 66.3
Sc15g0002420 Simmondsia chinensis HOM05D005440 ORTHO05D007314 5.6e-175 618.2 481 64.4
ECA233G3205 Erigeron canadensis HOM05D005440 ORTHO05D007314 1.6e-174 616.7 466 66.7
Actinidia12520 Actinidia chinensis HOM05D005440 ORTHO05D007314 1.7e-171 606.7 460 66.7
BcaB06g28584 Brassica carinata HOM05D005440 ORTHO05D007314 3.2e-170 602.4 497 63.8
AL4G27520 Arabidopsis lyrata HOM05D005440 ORTHO05D007314 7.1e-170 601.3 516 60.9
AT2G32170 Arabidopsis thaliana HOM05D005440 ORTHO05D007314 1.2e-169 600.5 496 62.7
vmacro08748 Vaccinium macrocarpon HOM05D005440 ORTHO05D007314 1.6e-169 600.1 479 63.9
Sp4g14550 Schrenkiella parvula HOM05D005440 ORTHO05D007314 6.0e-169 598.2 486 62.3
A04p24740 Brassica napus HOM05D005440 ORTHO05D007314 1.3e-168 597.0 495 62.2
C04p61670 Brassica napus HOM05D005440 ORTHO05D007314 8.7e-168 594.3 491 62.3
BcaC02g07946 Brassica carinata HOM05D005440 ORTHO05D007314 1.9e-167 593.2 492 63.0
BolC4t27650H Brassica oleracea HOM05D005440 ORTHO05D007314 1.9e-167 593.2 492 63.0
Carub.0004s1349 Capsella rubella HOM05D005440 ORTHO05D007314 4.3e-167 592.0 481 63.0
Aqoxy1G01485 Aquilegia oxysepala HOM05D005440 ORTHO05D007314 4.8e-166 588.6 463 64.6
CARHR125970 Cardamine hirsuta HOM05D005440 ORTHO05D007314 1.4e-165 587.0 489 62.2
PSO541G5910 Papaver somniferum HOM05D005440 ORTHO05D007314 1.8e-165 586.6 469 64.8
Sabra16G0027400 Salix brachista HOM05D005440 ORTHO05D007314 2.4e-165 586.3 478 63.8
HPP92_001868 Vanilla planifolia HOM05D005440 ORTHO05D007314 2.0e-164 583.2 487 61.0
ATR0763G213 Amborella trichopoda HOM05D005440 ORTHO05D007314 5.8e-164 581.6 472 62.1
TWI60G0012 Tripterygium wilfordii HOM05D005440 ORTHO05D007314 5.8e-164 581.6 472 64.4
unitig_32.g10657 Utricularia gibba HOM05D005440 ORTHO05D007314 1.1e-162 577.4 469 62.0
DCAR_019996 Daucus carota HOM05D005440 ORTHO05D007314 1.4e-162 577.0 470 62.6
MBI18_g10015_MAGBIO Magnolia biondii HOM05D005440 ORTHO05D007314 9.3e-162 574.3 469 62.5
BraA04t17992Z Brassica rapa HOM05D005440 ORTHO05D007314 1.0e-160 570.9 553 55.9
Os05g0511300 Oryza sativa ssp. japonica HOM05D005440 ORTHO05D007314 1.3e-160 570.5 488 59.2
Potri.016G021400 Populus trichocarpa HOM05D005440 ORTHO05D007314 1.9e-159 566.6 488 61.9
AUR62017608 Chenopodium quinoa HOM05D005440 ORTHO05D007314 8.1e-158 561.2 474 62.2
arahy.Tifrunner.gnm1.ann1.TU4NXX Arachis hypogaea HOM05D005440 ORTHO05D007314 1.8e-157 560.1 472 63.8
Oeu053137.1 Olea europaea HOM05D005440 ORTHO05D007314 5.8e-156 555.1 464 62.1
Zm00001eb292540 Zea mays HOM05D005440 ORTHO05D007314 2.4e-154 549.7 484 60.3
Sabra16G0024900 Salix brachista HOM05D005440 ORTHO05D007314 5.5e-154 548.5 481 61.1
SEGI_34757 Sequoiadendron giganteum HOM05D005440 ORTHO05D007314 1.8e-149 533.5 557 51.9
Nitab4.5_0000496g0020 Nicotiana tabacum HOM05D005440 ORTHO05D007314 3.1e-149 532.7 451 62.5
AT2G32160 Arabidopsis thaliana HOM05D005440 ORTHO05D007314 1.5e-148 530.4 485 57.9
EL10Ac9g22859 Beta vulgaris HOM05D005440 ORTHO05D007314 6.5e-147 525.0 487 58.9
SalBow5G0813 Salvia bowleyana HOM05D005440 ORTHO05D007314 1.4e-146 523.9 383 67.4
Cpa.g.sc8.301 Carica papaya HOM05D005440 ORTHO05D007314 1.3e-142 510.8 410 63.7
ClCG11G016720 Citrullus lanatus HOM05D005440 ORTHO05D007314 1.3e-142 510.8 490 56.3
Aa31LG5G4880 Aethionema arabicum HOM05D005440 ORTHO05D007314 1.6e-142 510.4 476 56.5
Lsat_1_v5_gn_5_68301 Lactuca sativa HOM05D005440 ORTHO05D007314 3.7e-142 509.2 466 58.8
AUR62015149 Chenopodium quinoa HOM05D005440 ORTHO05D007314 2.4e-141 506.5 515 54.6
Thhalv10017571m.g Eutrema salsugineum HOM05D005440 ORTHO05D007314 5.9e-140 501.9 406 63.1
CDE06G0633 Ceratophyllum demersum HOM05D005440 ORTHO05D007314 7.2e-138 495.0 394 64.7
FAN05G0095 Fragaria x ananassa HOM05D005440 ORTHO05D007314 9.7e-135 484.6 468 58.5
Pp3c17_14810 Physcomitrium patens HOM05D005440 ORTHO05D007314 1.1e-133 481.1 507 50.9
Carub.0004s1348 Capsella rubella HOM05D005440 ORTHO05D007314 1.8e-133 480.3 475 53.1
QL04p060188 Quercus lobata HOM05D005440 ORTHO05D007314 3.1e-133 479.6 260 83.5
Thecc.01G171200 Theobroma cacao HOM05D005440 ORTHO05D007314 6.9e-133 478.4 379 66.0
AagrBONN_evm.TU.Sc2ySwM_368.3314 Anthoceros agrestis HOM05D005440 ORTHO05D007314 8.5e-131 471.5 467 53.7
Mapoly0014s0077 Marchantia polymorpha HOM05D005440 ORTHO05D007314 7.4e-127 458.4 557 46.9
Dinv02983 Davidia involucrata HOM05D005440 ORTHO05D007314 1.4e-125 454.1 842 36.1
DCAR_009586 Daucus carota HOM05D005440 ORTHO05D007314 3.2e-122 443.0 264 78.4
Sabra06G0017100 Salix brachista HOM05D005440 ORTHO05D007314 1.6e-121 440.7 500 52.8
FAN09G4325 Fragaria x ananassa HOM05D005440 ORTHO05D007314 2.7e-121 439.9 442 55.0
Pp3c1_31970 Physcomitrium patens HOM05D005440 ORTHO05D007314 3.9e-120 436.0 506 49.0
Haze_13637 Corylus avellana HOM05D005440 ORTHO05D007314 3.1e-117 426.4 407 57.5
Nitab4.5_0002704g0030 Nicotiana tabacum HOM05D005440 ORTHO05D007314 8.5e-107 391.7 428 54.9
Psat5g108080 Pisum sativum HOM05D005440 ORTHO05D007314 2.3e-104 383.6 338 60.9
Sabra16G0025200 Salix brachista HOM05D005440 ORTHO05D007314 4.1e-101 372.9 472 46.8
arahy.Tifrunner.gnm1.ann1.Z94T11 Arachis hypogaea HOM05D005440 ORTHO05D007314 1.6e-97 360.9 391 55.5
CBR_g29536 Chara braunii HOM05D000019 ORTHO05D000048 3.4e-95 353.2 634 36.9
Sabra16G0027100 Salix brachista HOM05D005440 ORTHO05D007314 2.4e-93 347.1 483 46.0
SMO358G0560 Selaginella moellendorffii HOM05D005440 ORTHO05D007314 2.3e-91 340.5 226 67.7
Ah.01g013380 Amaranthus hybridus HOM05D005440 ORTHO05D007314 9.5e-90 335.1 346 55.2
Cre03.g188950 Chlamydomonas reinhardtii HOM05D005440 ORTHO05D007314 2.3e-80 303.9 482 38.8
MCO05G304 Micromonas commoda HOM05D005440 ORTHO05D007314 3.0e-75 287.0 463 38.2
CARHR125960 Cardamine hirsuta HOM05D005440 ORTHO05D007314 5.6e-74 282.7 191 66.0
PRCOL_00002828 Prasinoderma coloniale HOM05D005440 ORTHO05D007314 1.6e-65 254.6 281 45.9
SGA_v2.0_scaffold35G13960 Striga asiatica HOM05D005440 ORTHO05D007314 4.6e-60 236.5 132 80.3
Atru.ctg1434.11 Acer truncatum HOM05D005440 ORTHO05D007314 6.6e-59 232.6 313 41.9
Psat5g108160 Pisum sativum HOM05D005440 ORTHO05D007314 8.1e-57 225.7 123 82.1
Aqoxy1G03388 Aquilegia oxysepala HOM05D005440 ORTHO05D007314 1.3e-54 218.4 388 39.7
Cfa026418 Carpinus fangiana HOM05D005440 ORTHO05D007314 5.4e-53 213.0 299 39.1
Lj4C830T18 Lonicera japonica HOM05D005440 ORTHO05D007314 7.8e-52 209.1 109 87.2
CARHR125950 Cardamine hirsuta HOM05D005440 ORTHO05D007314 3.2e-45 187.2 109 81.7
Hund08219 Selenicereus undatus HOM05D005440 ORTHO05D007314 2.1e-36 157.9 86 86.0
Lj4A830T38 Lonicera japonica HOM05D005440 ORTHO05D007314 1.6e-25 121.7 82 70.7
RcHm_v2.0_Chr2g0172691 Rosa chinensis HOM05D005440 ORTHO05D007314 1.2e-20 105.5 57 78.9
Hund08218 Selenicereus undatus HOM05D005440 ORTHO05D007314 8.8e-19 99.4 81 58.0
Dinv02985 Davidia involucrata HOM05D005440 ORTHO05D034043 5.9e-15 86.7 59 76.3
CARHR125940 Cardamine hirsuta HOM05D005440 ORTHO05D034043 7.2e-13 79.7 69 53.6
RcHm_v2.0_Chr5g0059521 Rosa chinensis HOM05D005440 ORTHO05D007314 1.2e-12 79.0 41 80.5
SEGI_40090 Sequoiadendron giganteum HOM05D005440 ORTHO05D034043 3.0e-11 74.3 70 54.3
CAN.G93.4 Capsicum annuum HOM05D000541 ORTHO05D000137 2.0e-10 71.6 94 44.7
CAN.G62.19 Capsicum annuum HOM05D001673 ORTHO05D013418 9.7e-10 69.3 45 73.3
CAN.G1245.16 Capsicum annuum HOM05D001673 ORTHO05D022156 2.8e-09 67.8 45 73.3
CAN.G80.1 Capsicum annuum HOM05D001673 ORTHO05D022156 2.8e-09 67.8 72 51.4
QL04p060164 Quercus lobata HOM05D005440 ORTHO05D007314 2.4e-08 64.7 123 36.6


User provided reference genes

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