Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g20200 Coffea canephora HOM05D006657 ORTHO05D005964 0.0e+00 2312.7 1185 100.0
Cc00_g14340 Coffea canephora HOM05D006657 ORTHO05D005964 1.1e-181 641.7 360 91.7
Dinv17292 Davidia involucrata HOM05D006657 ORTHO05D005964 7.6e-151 539.3 1081 39.0
Dinv29204 Davidia involucrata HOM05D006657 ORTHO05D005964 6.5e-134 483.0 1025 38.1
Actinidia34275 Actinidia chinensis HOM05D006657 ORTHO05D005964 6.9e-128 463.0 1194 34.9
Oeu055400.1 Olea europaea HOM05D006657 ORTHO05D005964 4.2e-125 453.8 1036 37.5
CSS0010102 Camellia sinensis var. sinensis HOM05D006657 ORTHO05D005964 1.3e-118 432.2 1125 34.3
Migut.F00140 Erythranthe guttata HOM05D006657 ORTHO05D005964 2.4e-112 411.4 1013 34.3
GSVIVG01038660001 Vitis vinifera HOM05D006657 ORTHO05D005964 3.1e-104 384.4 1236 30.1
PGSC0003DMG400000558 Solanum tuberosum HOM05D006657 ORTHO05D005964 5.7e-98 363.6 1009 34.8
Rhsim09G0210400 Rhododendron simsii HOM05D006657 ORTHO05D005964 4.8e-97 360.5 1066 32.7
CAN.G303.40 Capsicum annuum HOM05D006657 ORTHO05D005964 5.0e-94 350.5 1005 33.3
Nitab4.5_0000021g0080 Nicotiana tabacum HOM05D006657 ORTHO05D005964 6.5e-94 350.1 1025 33.4
Peaxi162Scf00912g00114 Petunia axillaris HOM05D006657 ORTHO05D005964 2.5e-93 348.2 1022 32.9
SalBow4G2342 Salvia bowleyana HOM05D006657 ORTHO05D005964 2.5e-93 348.2 990 32.2
Nitab4.5_0006821g0010 Nicotiana tabacum HOM05D006657 ORTHO05D005964 3.2e-93 347.8 1025 33.4
SalBow4G2934 Salvia bowleyana HOM05D006657 ORTHO05D005964 1.4e-91 342.4 990 32.0
QL09p006779 Quercus lobata HOM05D006657 ORTHO05D005964 3.0e-91 341.3 1108 32.2
Sopen03g021870 Solanum pennellii HOM05D006657 ORTHO05D005964 2.6e-90 338.2 1002 33.4
Solyc03g080140.3 Solanum lycopersicum HOM05D006657 ORTHO05D005964 9.1e-88 329.7 993 33.0
Haze_00307 Corylus avellana HOM05D006657 ORTHO05D005964 1.7e-86 325.5 1265 30.5
DCAR_008990 Daucus carota HOM05D006657 ORTHO05D005964 2.2e-86 325.1 1010 31.1
TAR374G0213 Trochodendron aralioides HOM05D006657 ORTHO05D005964 1.5e-85 322.4 966 31.9
SGA_v2.0_scaffold44G16853 Striga asiatica HOM05D006657 ORTHO05D005964 3.6e-84 317.8 1001 32.0
Cfa016147 Carpinus fangiana HOM05D006657 ORTHO05D005964 2.3e-83 315.1 1250 30.2
Manes.01G044100 Manihot esculenta HOM05D006657 ORTHO05D005964 2.6e-82 311.6 1202 29.5
MSTRG.26967 Avicennia marina HOM05D006657 ORTHO05D005964 2.2e-81 308.5 1055 29.7
vmacro06453 Vaccinium macrocarpon HOM05D006657 ORTHO05D005964 3.8e-78 297.7 1025 31.1
Rhsim03G0216600 Rhododendron simsii HOM05D006657 ORTHO05D005964 1.5e-77 295.8 1054 31.0
vmacro10166 Vaccinium macrocarpon HOM05D006657 ORTHO05D005964 1.6e-76 292.4 1011 31.4
SGA_v2.0_scaffold18G08476 Striga asiatica HOM05D006657 ORTHO05D005964 5.7e-74 283.9 1015 30.7
Actinidia08706 Actinidia chinensis HOM05D006657 ORTHO05D005964 2.2e-73 282.0 720 33.9
Potri.015G003700 Populus trichocarpa HOM05D006657 ORTHO05D005964 2.9e-73 281.6 1168 29.6
TAR375G0071 Trochodendron aralioides HOM05D006657 ORTHO05D005964 1.1e-72 279.6 1048 28.9
DCAR_020382 Daucus carota HOM05D006657 ORTHO05D005964 1.6e-71 275.8 1029 29.3
RcHm_v2.0_Chr1g0383041 Rosa chinensis HOM05D006657 ORTHO05D005964 2.8e-68 265.0 1196 28.8
Sabra15G0002400 Salix brachista HOM05D006657 ORTHO05D005964 3.1e-67 261.5 1228 28.5
CiPaw.05G206100 Carya illinoinensis HOM05D006657 ORTHO05D005964 4.9e-65 254.2 968 30.3
FvH4_7g33030 Fragaria vesca HOM05D006657 ORTHO05D005964 6.4e-65 253.8 1039 29.1
Sabra12G0004100 Salix brachista HOM05D006657 ORTHO05D005964 7.0e-64 250.4 1205 28.6
FAN03G1526 Fragaria x ananassa HOM05D006657 ORTHO05D005964 2.3e-62 245.4 1036 28.8
Thecc.03G210000 Theobroma cacao HOM05D006657 ORTHO05D005964 4.3e-61 241.1 1221 27.0
Duzib205G0597 Durio zibethinus HOM05D006657 ORTHO05D005964 5.6e-61 240.7 1152 28.5
Prupe.2G320100 Prunus persica HOM05D006657 ORTHO05D005964 9.5e-61 240.0 1018 28.4
FAN10G2847 Fragaria x ananassa HOM05D006657 ORTHO05D005964 1.2e-60 239.6 1036 28.4
FAN10G1617 Fragaria x ananassa HOM05D006657 ORTHO05D005964 2.1e-60 238.8 1038 28.4
Potri.012G007000 Populus trichocarpa HOM05D006657 ORTHO05D005964 6.8e-59 233.8 1201 28.3
Sabra12G0008600 Salix brachista HOM05D006657 ORTHO05D005964 6.8e-59 233.8 1198 28.3
CANSAT21G0900 Cannabis sativa HOM05D006657 ORTHO05D005964 4.9e-57 227.6 1212 27.1
Duzib084G0166 Durio zibethinus HOM05D006657 ORTHO05D005964 8.3e-57 226.9 1205 27.7
Oeu029332.2 Olea europaea HOM05D006657 ORTHO05D005964 8.3e-57 226.9 535 34.8
Lj1A1029T62 Lonicera japonica HOM05D006657 ORTHO05D005964 6.0e-55 220.7 484 37.2
TWI14G0251 Tripterygium wilfordii HOM05D006657 ORTHO05D005964 1.1e-53 216.5 1223 27.2
COL.COLO4_14382 Corchorus olitorius HOM05D006657 ORTHO05D005964 1.6e-52 212.6 1104 27.3
Ciclev10018632m.g Citrus clementina HOM05D006657 ORTHO05D005964 4.7e-52 211.1 1211 26.8
Gohir.D08G117100 Gossypium hirsutum HOM05D006657 ORTHO05D005964 4.9e-49 201.1 1174 25.0
Gorai.004G125800 Gossypium raimondii HOM05D006657 ORTHO05D005964 7.1e-48 197.2 1184 24.8
Atru.chr12.2479 Acer truncatum HOM05D006657 ORTHO05D005964 1.2e-47 196.4 873 27.9
TWI23G1261 Tripterygium wilfordii HOM05D006657 ORTHO05D005964 1.6e-47 196.1 1270 25.6
Duzib068G0081 Durio zibethinus HOM05D006657 ORTHO05D005964 4.6e-47 194.5 1042 28.0
MD01G1229500 Malus domestica HOM05D006657 ORTHO05D005964 1.7e-46 192.6 939 28.6
MD07G1301500 Malus domestica HOM05D006657 ORTHO05D005964 2.4e-43 182.2 907 27.6
Lsat_1_v5_gn_2_134840 Lactuca sativa HOM05D006657 ORTHO05D005964 3.1e-43 181.8 1013 26.7
Lalb_Chr23g0272001 Lupinus albus HOM05D006657 ORTHO05D005964 3.0e-38 165.2 732 26.0
Nn1g05264 Nelumbo nucifera HOM05D006657 ORTHO05D005964 1.1e-37 163.3 1081 25.4
Lj1g0002697 Lotus japonicus HOM05D006657 ORTHO05D005964 1.8e-35 156.0 739 26.8
Sc13g0010540 Simmondsia chinensis HOM05D006657 ORTHO05D005964 3.1e-35 155.2 1122 24.7
arahy.Tifrunner.gnm1.ann1.UMZ78C Arachis hypogaea HOM05D006657 ORTHO05D005964 2.4e-32 145.6 1052 25.3
CiPaw.06G040100 Carya illinoinensis HOM05D006657 ORTHO05D005964 2.4e-32 145.6 495 28.9
PGR042G1854 Punica granatum HOM05D006657 ORTHO05D005964 7.9e-31 140.6 1136 24.3
arahy.Tifrunner.gnm1.ann1.UB23H3 Arachis hypogaea HOM05D006657 ORTHO05D005964 1.0e-30 140.2 597 26.5
Lalb_Chr11g0067471 Lupinus albus HOM05D006657 ORTHO05D005964 1.0e-30 140.2 780 24.7
CsaV3_4G008600 Cucumis sativus L. HOM05D006657 ORTHO05D005964 1.7e-30 139.4 1110 25.1
AUR62005972 Chenopodium quinoa HOM05D006657 ORTHO05D005964 7.4e-29 134.0 1200 24.2
EL10Ac3g05155 Beta vulgaris HOM05D006657 ORTHO05D005964 8.1e-28 130.6 962 24.1
Psat5g071280 Pisum sativum HOM05D006657 ORTHO05D005964 8.1e-28 130.6 729 23.6
AUR62028098 Chenopodium quinoa HOM05D006657 ORTHO05D005964 1.2e-26 126.7 976 24.5
Glyma.06G138000 Glycine max HOM05D006657 ORTHO05D005964 1.2e-26 126.7 716 26.1
Sed0019147 Sechium edule HOM05D006657 ORTHO05D005964 2.6e-26 125.6 601 28.0
Glyma.04G227100 Glycine max HOM05D006657 ORTHO05D005964 7.6e-26 124.0 719 24.3
MBI04_g37612_MAGBIO Magnolia biondii HOM05D006657 ORTHO05D005964 1.3e-25 123.2 1147 24.0
TAR629G3494 Trochodendron aralioides HOM05D006657 ORTHO05D005964 3.8e-25 121.7 410 28.8
FAN01G2018 Fragaria x ananassa HOM05D006657 ORTHO05D005964 4.9e-25 121.3 286 30.4
ECA233G2144 Erigeron canadensis HOM05D006657 ORTHO05D005964 1.9e-24 119.4 420 29.3
Ca_16789_v3 Cicer arietinum L. HOM05D006657 ORTHO05D005964 4.2e-24 118.2 709 23.3
Ca_16805_v3 Cicer arietinum L. HOM05D006657 ORTHO05D005964 4.2e-24 118.2 709 23.3
VMungo1309G0886 Vigna mungo HOM05D006657 ORTHO05D005964 7.1e-24 117.5 498 26.7
TAR629G2606 Trochodendron aralioides HOM05D006657 ORTHO05D005964 9.3e-24 117.1 843 25.3
Phvul.009G038600 Phaseolus vulgaris HOM05D006657 ORTHO05D005964 6.0e-23 114.4 477 27.0
Medtr3g093000 Medicago truncatula HOM05D006657 ORTHO05D005964 3.9e-22 111.7 692 24.3
Eucgr.K00044 Eucalyptus grandis HOM05D006657 ORTHO05D005964 4.3e-21 108.2 509 27.1
Gohir.A08G105800 Gossypium hirsutum HOM05D006657 ORTHO05D005964 4.3e-21 108.2 878 22.4
unitig_0.g2439 Utricularia gibba HOM05D006657 ORTHO05D005964 9.6e-21 107.1 424 27.1
MBI04_g41177_MAGBIO Magnolia biondii HOM05D006657 ORTHO05D005964 1.1e-19 103.6 865 25.0
HanXRQChr08g0226001 Helianthus annuus HOM05D006657 ORTHO05D005964 3.1e-19 102.1 448 26.1
Cpa.g.sc3.164 Carica papaya HOM05D006657 ORTHO05D005964 5.3e-19 101.3 1137 22.8
Aqoxy5G04358 Aquilegia oxysepala HOM05D006657 ORTHO05D005964 3.4e-18 98.6 521 26.7
PSO782G1897 Papaver somniferum HOM05D006657 ORTHO05D005964 4.5e-18 98.2 971 23.1
Ah.07g204540 Amaranthus hybridus HOM05D006657 ORTHO05D005964 7.6e-18 97.4 1132 21.9
TPR.G33400 Trifolium pratense HOM05D006657 ORTHO05D005964 7.6e-18 97.4 680 22.9
Hund23980 Selenicereus undatus HOM05D006657 ORTHO05D005964 3.8e-17 95.1 1222 24.3
Ah.13g070870 Amaranthus hybridus HOM05D006657 ORTHO05D005964 4.2e-16 91.7 1136 21.7
Potri.001G452300 Populus trichocarpa HOM05D011672 ORTHO05D011012 4.2e-16 91.7 446 26.0
Cpa.g.sc9.388 Carica papaya HOM05D006657 ORTHO05D005964 7.1e-16 90.9 234 35.9
Sabra16G0305400 Salix brachista HOM05D011672 ORTHO05D011012 7.9e-15 87.4 433 26.3
Eucgr.A00967 Eucalyptus grandis HOM05D006657 ORTHO05D005964 5.1e-14 84.7 312 27.9
PSO170G0737 Papaver somniferum HOM05D006657 ORTHO05D005964 6.7e-14 84.3 1170 22.7
THA.LOC104799674 Tarenaya hassleriana HOM05D009821 ORTHO05D005964 8.7e-14 84.0 262 31.7
QL02p027097 Quercus lobata HOM05D013249 ORTHO05D011012 1.9e-13 82.8 654 23.1
BolC3t18811H Brassica oleracea HOM05D009821 ORTHO05D005964 2.5e-13 82.4 581 26.9
C03p65560 Brassica napus HOM05D009821 ORTHO05D005964 3.3e-13 82.0 581 26.9
Aa31LG11G3790 Aethionema arabicum HOM05D009821 ORTHO05D005964 5.7e-13 81.3 403 26.3
BcaC01g02410 Brassica carinata HOM05D009821 ORTHO05D005964 5.7e-13 81.3 581 26.9
C08p24510 Brassica napus HOM05D009821 ORTHO05D005964 2.1e-12 79.3 206 34.0
AT3G49490 Arabidopsis thaliana HOM05D009821 ORTHO05D005964 2.8e-12 79.0 386 29.0
BolC8t50069H Brassica oleracea HOM05D009821 ORTHO05D005964 2.8e-12 79.0 206 34.0
BcaC07g39413 Brassica carinata HOM05D009821 ORTHO05D005964 4.8e-12 78.2 206 34.0
Carub.0005s1582 Capsella rubella HOM05D009821 ORTHO05D005964 1.8e-11 76.3 524 26.1
A06p18270 Brassica napus HOM05D009821 ORTHO05D005964 1.2e-10 73.6 310 28.7
BraA06t24910Z Brassica rapa HOM05D009821 ORTHO05D005964 1.2e-10 73.6 310 28.7
AL5G29280 Arabidopsis lyrata HOM05D009821 ORTHO05D005964 1.0e-09 70.5 443 26.2
A01p24720 Brassica napus HOM05D009821 ORTHO05D005964 1.0e-09 70.5 270 28.9
BraA01t02384Z Brassica rapa HOM05D009821 ORTHO05D005964 1.0e-09 70.5 270 28.9
BcaB02g09591 Brassica carinata HOM05D009821 ORTHO05D005964 1.7e-09 69.7 351 28.2
A06p28240 Brassica napus HOM05D009821 ORTHO05D005964 1.7e-09 69.7 464 27.2
BraA06t25767Z Brassica rapa HOM05D009821 ORTHO05D005964 1.7e-09 69.7 464 27.2
ATR0579G071 Amborella trichopoda HOM05D006657 ORTHO05D005964 2.2e-09 69.3 286 25.5
MBI12_g20086_MAGBIO Magnolia biondii HOM05D006657 ORTHO05D005964 2.2e-09 69.3 737 23.1
CARHR158490 Cardamine hirsuta HOM05D009821 ORTHO05D005964 3.8e-09 68.6 298 28.9
BcaB01g00702 Brassica carinata HOM05D009821 ORTHO05D005964 6.5e-09 67.8 327 28.1
MD06G1124500 Malus domestica HOM05D013249 ORTHO05D011012 1.9e-08 66.2 473 23.0
BcaB05g23119 Brassica carinata HOM05D009821 ORTHO05D005964 2.5e-08 65.9 377 27.1
BcaC09g49952 Brassica carinata HOM05D009821 ORTHO05D005964 1.8e-06 59.7 254 28.7
BolC1t03016H Brassica oleracea HOM05D009821 ORTHO05D005964 8.7e-06 57.4 313 26.5


User provided reference genes

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