Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g20180 Coffea canephora HOM05D005155 ORTHO05D006266 4.2e-53 211.1 105 100.0
Cc02_g33980 Coffea canephora HOM05D005155 ORTHO05D006266 1.7e-46 189.1 105 90.5
Cc00_g29960 Coffea canephora HOM05D005155 ORTHO05D006266 4.2e-37 157.9 89 88.8
SalBow7G0407 Salvia bowleyana HOM05D005155 ORTHO05D006266 7.4e-34 147.1 105 68.6
Oeu022053.1 Olea europaea HOM05D005155 ORTHO05D006266 1.3e-30 136.3 105 64.8
Peaxi162Scf00359g00214 Petunia axillaris HOM05D005155 ORTHO05D006266 4.2e-29 131.3 104 67.3
Rhsim04G0007200 Rhododendron simsii HOM05D005155 ORTHO05D006266 5.5e-29 131.0 105 65.7
Nitab4.5_0004941g0060 Nicotiana tabacum HOM05D005155 ORTHO05D006266 9.4e-29 130.2 103 64.1
Solyc05g005730.4 Solanum lycopersicum HOM05D005155 ORTHO05D006266 2.3e-27 125.6 103 63.1
Actinidia24711 Actinidia chinensis HOM05D005155 ORTHO05D006266 3.0e-27 125.2 105 61.9
Sopen05g001730 Solanum pennellii HOM05D005155 ORTHO05D006266 3.0e-27 125.2 103 63.1
CAN.G1447.4 Capsicum annuum HOM05D005155 ORTHO05D006266 4.0e-27 124.8 103 61.2
Nitab4.5_0003086g0050 Nicotiana tabacum HOM05D005155 ORTHO05D006266 5.2e-27 124.4 103 61.2
Actinidia20603 Actinidia chinensis HOM05D005155 ORTHO05D006266 6.7e-27 124.0 105 61.9
Migut.M00065 Erythranthe guttata HOM05D005155 ORTHO05D006266 6.7e-27 124.0 105 61.0
Ciclev10015959m.g Citrus clementina HOM05D005155 ORTHO05D006266 8.8e-27 123.6 106 60.4
PGSC0003DMG400004112 Solanum tuberosum HOM05D005155 ORTHO05D006266 2.6e-26 122.1 103 62.1
Cpa.g.sc136.55 Carica papaya HOM05D005155 ORTHO05D006266 4.4e-26 121.3 103 60.2
CSS0023894 Camellia sinensis var. sinensis HOM05D005155 ORTHO05D006266 5.7e-26 120.9 103 60.2
CSS0035525 Camellia sinensis var. sinensis HOM05D005155 ORTHO05D006266 5.7e-26 120.9 103 60.2
Potri.014G170500 Populus trichocarpa HOM05D005155 ORTHO05D006266 5.7e-26 120.9 105 64.8
Prupe.3G194600 Prunus persica HOM05D005155 ORTHO05D006266 5.7e-26 120.9 103 62.1
MELO3C024180.2 Cucumis melo HOM05D005155 ORTHO05D006266 9.7e-26 120.2 106 59.4
Atru.chr6.3431 Acer truncatum HOM05D005155 ORTHO05D006266 2.2e-25 119.0 105 60.0
Manes.13G059900 Manihot esculenta HOM05D005155 ORTHO05D006266 2.2e-25 119.0 103 58.3
ClCG02G003040 Citrullus lanatus HOM05D005155 ORTHO05D006266 2.8e-25 118.6 107 59.8
CsaV3_7G002370 Cucumis sativus L. HOM05D005155 ORTHO05D006266 2.8e-25 118.6 106 58.5
CANSAT64G2107 Cannabis sativa HOM05D005155 ORTHO05D006266 4.8e-25 117.9 104 61.5
MD09G1131700 Malus domestica HOM05D005155 ORTHO05D006266 4.8e-25 117.9 103 63.1
Sed0007088 Sechium edule HOM05D005155 ORTHO05D006266 4.8e-25 117.9 104 59.6
Gohir.A11G147700 Gossypium hirsutum HOM05D005155 ORTHO05D006266 6.3e-25 117.5 105 61.0
Gohir.D11G154600 Gossypium hirsutum HOM05D005155 ORTHO05D006266 6.3e-25 117.5 105 61.0
Gorai.007G164700 Gossypium raimondii HOM05D005155 ORTHO05D006266 6.3e-25 117.5 105 61.0
Dinv21322 Davidia involucrata HOM05D005155 ORTHO05D006266 2.4e-24 115.5 105 58.1
SGA_v2.0_scaffold181G39700 Striga asiatica HOM05D005155 ORTHO05D006266 3.1e-24 115.2 145 47.6
Actinidia20617 Actinidia chinensis HOM05D005155 ORTHO05D006266 7.0e-24 114.0 83 66.3
HanXRQChr01g0006811 Helianthus annuus HOM05D005155 ORTHO05D006266 9.1e-24 113.6 104 60.6
PGR044G0745 Punica granatum HOM05D005155 ORTHO05D006266 1.2e-23 113.2 103 55.3
BcaB04g19566 Brassica carinata HOM05D005155 ORTHO05D006266 1.6e-23 112.8 102 59.8
Duzib138G0133 Durio zibethinus HOM05D005155 ORTHO05D006266 1.6e-23 112.8 105 59.0
Thecc.01G199500 Theobroma cacao HOM05D005155 ORTHO05D006266 1.6e-23 112.8 105 59.0
CARHR218550 Cardamine hirsuta HOM05D005155 ORTHO05D006266 2.0e-23 112.5 102 57.8
Haze_24928 Corylus avellana HOM05D005155 ORTHO05D006266 2.0e-23 112.5 105 56.2
Duzib211G0098 Durio zibethinus HOM05D005155 ORTHO05D006266 2.7e-23 112.1 103 55.3
FAN05G3842 Fragaria x ananassa HOM05D005155 ORTHO05D006266 2.7e-23 112.1 105 59.0
Eucgr.K01388 Eucalyptus grandis HOM05D005155 ORTHO05D006266 3.5e-23 111.7 105 56.2
Lsat_1_v5_gn_0_13881 Lactuca sativa HOM05D005155 ORTHO05D006266 3.5e-23 111.7 104 58.7
Cfa014201 Carpinus fangiana HOM05D005155 ORTHO05D006266 4.5e-23 111.3 105 57.1
A09p04360 Brassica napus HOM05D005155 ORTHO05D006266 5.9e-23 110.9 102 57.8
ECA248G0062 Erigeron canadensis HOM05D005155 ORTHO05D006266 5.9e-23 110.9 105 59.0
FvH4_6g40390 Fragaria vesca HOM05D005155 ORTHO05D006266 7.7e-23 110.5 105 58.1
FAN09G4460 Fragaria x ananassa HOM05D005155 ORTHO05D006266 1.0e-22 110.2 103 56.3
VMungo0540G1824 Vigna mungo HOM05D005155 ORTHO05D006266 1.0e-22 110.2 105 57.1
CARHR286520 Cardamine hirsuta HOM05D005155 ORTHO05D006266 1.3e-22 109.8 102 57.8
FAN02G4414 Fragaria x ananassa HOM05D005155 ORTHO05D006266 1.3e-22 109.8 105 58.1
BcaC04g23785 Brassica carinata HOM05D005155 ORTHO05D006266 1.7e-22 109.4 102 57.8
C09p04670 Brassica napus HOM05D005155 ORTHO05D006266 1.7e-22 109.4 102 57.8
RcHm_v2.0_Chr2g0155591 Rosa chinensis HOM05D005155 ORTHO05D006266 1.7e-22 109.4 105 56.2
Sp2g18610 Schrenkiella parvula HOM05D005155 ORTHO05D006266 2.2e-22 109.0 102 56.9
Thhalv10004636m.g Eutrema salsugineum HOM05D005155 ORTHO05D006266 3.8e-22 108.2 102 58.8
Carub.0008s0781 Capsella rubella HOM05D005155 ORTHO05D006266 5.0e-22 107.8 98 60.2
COL.COLO4_19654 Corchorus olitorius HOM05D005155 ORTHO05D006266 5.0e-22 107.8 105 58.1
Haze_12586 Corylus avellana HOM05D005155 ORTHO05D006266 6.5e-22 107.5 106 55.7
THA.LOC104819027 Tarenaya hassleriana HOM05D005155 ORTHO05D006266 6.5e-22 107.5 103 55.3
AL8G20970 Arabidopsis lyrata HOM05D005155 ORTHO05D006266 8.5e-22 107.1 102 56.9
Aqoxy3G04181 Aquilegia oxysepala HOM05D005155 ORTHO05D006266 1.1e-21 106.7 106 56.6
Hma1.2p1_0629F.1_g192150 Hydrangea macrophylla HOM05D005155 ORTHO05D006266 1.1e-21 106.7 106 57.5
C07p38970 Brassica napus HOM05D005155 ORTHO05D006266 1.5e-21 106.3 102 56.9
GSVIVG01030126001 Vitis vinifera HOM05D005155 ORTHO05D006266 1.5e-21 106.3 103 55.3
Aa31LG4G7530 Aethionema arabicum HOM05D005155 ORTHO05D006266 1.9e-21 105.9 103 55.3
Dinv05324 Davidia involucrata HOM05D005155 ORTHO05D006266 1.9e-21 105.9 83 65.1
AT5G48240 Arabidopsis thaliana HOM05D005155 ORTHO05D006266 2.5e-21 105.5 97 58.8
BcaC06g30816 Brassica carinata HOM05D005155 ORTHO05D006266 2.5e-21 105.5 102 54.9
Gohir.D07G170200 Gossypium hirsutum HOM05D005155 ORTHO05D006266 3.2e-21 105.1 105 56.2
Gorai.001G190100 Gossypium raimondii HOM05D005155 ORTHO05D006266 3.2e-21 105.1 105 56.2
A06p39310 Brassica napus HOM05D005155 ORTHO05D006266 4.2e-21 104.8 102 55.9
arahy.Tifrunner.gnm1.ann1.FV1RU3 Arachis hypogaea HOM05D005155 ORTHO05D006266 7.2e-21 104.0 105 55.2
arahy.Tifrunner.gnm1.ann1.ZBS9GV Arachis hypogaea HOM05D005155 ORTHO05D006266 7.2e-21 104.0 105 55.2
CAN.G715.5 Capsicum annuum HOM05D005155 ORTHO05D006266 9.4e-21 103.6 81 64.2
Glyma.03G238300 Glycine max HOM05D005155 ORTHO05D006266 9.4e-21 103.6 105 55.2
Gohir.A07G163100 Gossypium hirsutum HOM05D005155 ORTHO05D006266 9.4e-21 103.6 103 55.3
TWI75G0909 Tripterygium wilfordii HOM05D005155 ORTHO05D006266 9.4e-21 103.6 105 56.2
Glyma.19G235800 Glycine max HOM05D005155 ORTHO05D006266 1.2e-20 103.2 105 54.3
QL01p014609 Quercus lobata HOM05D005155 ORTHO05D006266 2.7e-20 102.1 104 53.8
Phvul.006G092400 Phaseolus vulgaris HOM05D005155 ORTHO05D006266 6.1e-20 100.9 105 56.2
BolC9t53395H Brassica oleracea HOM05D005155 ORTHO05D006266 1.8e-19 99.4 129 46.5
unitig_26.g9470 Utricularia gibba HOM05D003767 ORTHO05D004507 2.3e-19 99.0 82 59.8
CiPaw.04G197900 Carya illinoinensis HOM05D005155 ORTHO05D006266 3.0e-19 98.6 102 48.0
CiPaw.03G283900 Carya illinoinensis HOM05D005155 ORTHO05D006266 5.2e-19 97.8 103 51.5
THA.LOC104802634 Tarenaya hassleriana HOM05D005155 ORTHO05D006266 5.2e-19 97.8 84 61.9
BraA09t36073Z Brassica rapa HOM05D005155 ORTHO05D006266 6.8e-19 97.4 133 43.6
DCAR_021083 Daucus carota HOM05D005155 ORTHO05D006266 1.2e-18 96.7 104 51.0
Lj4g0024217 Lotus japonicus HOM05D005155 ORTHO05D006266 2.0e-18 95.9 103 53.4
Lalb_Chr21g0315451 Lupinus albus HOM05D005155 ORTHO05D006266 2.0e-18 95.9 106 50.9
MBI04_g26115_MAGBIO Magnolia biondii HOM05D005155 ORTHO05D006266 5.7e-18 94.4 110 53.6
Nn1g02050 Nelumbo nucifera HOM05D005155 ORTHO05D006266 7.5e-18 94.0 108 52.8
QL04p067008 Quercus lobata HOM05D005155 ORTHO05D006266 2.8e-17 92.0 88 55.7
Sc20g0004590 Simmondsia chinensis HOM05D005155 ORTHO05D006266 2.8e-17 92.0 107 46.7
BraA06t26845Z Brassica rapa HOM05D005155 ORTHO05D006266 6.3e-17 90.9 138 41.3
MD17G1119400 Malus domestica HOM05D005155 ORTHO05D006266 1.8e-16 89.4 83 60.2
FAN14G3535 Fragaria x ananassa HOM05D005155 ORTHO05D006266 2.4e-16 89.0 128 44.5
TPR.G3861 Trifolium pratense HOM05D005155 ORTHO05D006266 4.1e-16 88.2 105 47.6
TAR629G2368 Trochodendron aralioides HOM05D005155 ORTHO05D006266 5.4e-16 87.8 119 43.7
Psat7g043480 Pisum sativum HOM05D005155 ORTHO05D006266 7.7e-15 84.0 81 50.6
Ca_02017_v3 Cicer arietinum L. HOM05D005155 ORTHO05D006266 2.2e-14 82.4 86 52.3
AUR62030994 Chenopodium quinoa HOM05D005155 ORTHO05D006266 2.9e-14 82.0 84 50.0
Ah.08g219720 Amaranthus hybridus HOM05D005155 ORTHO05D006266 3.8e-14 81.6 84 50.0
PSO210G0096 Papaver somniferum HOM05D005155 ORTHO05D006266 3.8e-14 81.6 104 45.2
PSO782G4695 Papaver somniferum HOM05D005155 ORTHO05D006266 5.0e-14 81.3 104 46.2
Ah.08g210400 Amaranthus hybridus HOM05D005155 ORTHO05D006266 2.5e-13 79.0 84 50.0
EL10Ac5g10791 Beta vulgaris HOM05D005155 ORTHO05D006266 4.2e-13 78.2 88 50.0
Zm00001eb298370 Zea mays HOM05D005155 ORTHO05D006266 3.6e-12 75.1 104 45.2
Os11g0266000 Oryza sativa ssp. japonica HOM05D005155 ORTHO05D006266 8.0e-12 73.9 106 44.3
HPP92_009941 Vanilla planifolia HOM05D005155 ORTHO05D006266 1.8e-11 72.8 104 42.3
CDE09G0959 Ceratophyllum demersum HOM05D005155 ORTHO05D006266 2.3e-11 72.4 88 47.7
ATR0225G032 Amborella trichopoda HOM05D005155 ORTHO05D006266 1.2e-10 70.1 110 43.6
Nn3g19477 Nelumbo nucifera HOM05D005155 ORTHO05D006266 4.4e-10 68.2 85 49.4
TPR.G35685 Trifolium pratense HOM05D005155 ORTHO05D006266 4.4e-10 68.2 107 38.3
SEGI_31719 Sequoiadendron giganteum HOM05D005155 ORTHO05D006266 1.7e-09 66.2 116 39.7
Lj1A800T39 Lonicera japonica HOM05D005155 ORTHO05D006266 3.7e-09 65.1 51 66.7
BolC7t44418H Brassica oleracea HOM05D005155 ORTHO05D006266 9.2e-08 60.5 37 78.4
Lj1A800T38 Lonicera japonica HOM05D005155 ORTHO05D006266 1.0e-06 57.0 52 55.8


User provided reference genes

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