Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g20110 Coffea canephora HOM05D006952 ORTHO05D008687 6.9e-62 240.4 112 100.0
Cc06_g01680 Coffea canephora HOM05D006952 ORTHO05D008687 1.7e-39 166.0 115 75.7
Cc02_g31680 Coffea canephora HOM05D006952 ORTHO05D008687 9.1e-38 160.2 99 80.8
Sopen09g007000 Solanum pennellii HOM05D006952 ORTHO05D008687 1.2e-37 159.8 115 71.3
PGSC0003DMG400020322 Solanum tuberosum HOM05D006952 ORTHO05D008687 2.6e-37 158.7 115 71.3
MSTRG.19031 Avicennia marina HOM05D006952 ORTHO05D008687 3.8e-36 154.8 115 70.4
CAN.G355.18 Capsicum annuum HOM05D006952 ORTHO05D008687 5.0e-36 154.5 115 69.6
Oeu015014.1 Olea europaea HOM05D006952 ORTHO05D008687 6.5e-36 154.1 115 68.7
MSTRG.5599 Avicennia marina HOM05D006952 ORTHO05D008687 8.5e-36 153.7 115 67.8
SalBow5G3631 Salvia bowleyana HOM05D006952 ORTHO05D008687 1.1e-35 153.3 115 67.8
Oeu030529.1 Olea europaea HOM05D006952 ORTHO05D008687 1.4e-35 152.9 114 67.5
Migut.J00227 Erythranthe guttata HOM05D006952 ORTHO05D008687 1.2e-34 149.8 115 65.2
Hma1.2p1_0763F.1_g214620 Hydrangea macrophylla HOM05D006952 ORTHO05D008687 2.7e-34 148.7 115 69.6
Solyc09g013140.3 Solanum lycopersicum HOM05D006952 ORTHO05D008687 2.7e-34 148.7 110 70.0
TWI77G0025 Tripterygium wilfordii HOM05D006952 ORTHO05D008687 1.0e-33 146.7 115 67.8
Gohir.A09G163200 Gossypium hirsutum HOM05D006952 ORTHO05D008687 2.3e-33 145.6 115 64.3
Gohir.D09G158700 Gossypium hirsutum HOM05D006952 ORTHO05D008687 2.3e-33 145.6 115 64.3
Gorai.006G180400 Gossypium raimondii HOM05D006952 ORTHO05D008687 2.3e-33 145.6 115 64.3
Glyma.07G144600 Glycine max HOM05D006952 ORTHO05D008687 1.5e-32 142.9 115 66.1
TAR369G0842 Trochodendron aralioides HOM05D006952 ORTHO05D008687 2.0e-32 142.5 112 66.1
Prupe.6G270600 Prunus persica HOM05D006952 ORTHO05D008687 3.3e-32 141.7 115 66.1
VMungo1383G2957 Vigna mungo HOM05D006952 ORTHO05D008687 3.3e-32 141.7 115 66.1
Duzib128G2003 Durio zibethinus HOM05D006952 ORTHO05D008687 4.4e-32 141.4 115 63.5
Thecc.05G022400 Theobroma cacao HOM05D006952 ORTHO05D008687 4.4e-32 141.4 115 64.3
arahy.Tifrunner.gnm1.ann1.ES8MJM Arachis hypogaea HOM05D006952 ORTHO05D008687 5.7e-32 141.0 115 66.1
Ciclev10013166m.g Citrus clementina HOM05D006952 ORTHO05D008687 5.7e-32 141.0 115 65.2
Actinidia05346 Actinidia chinensis HOM05D006952 ORTHO05D008687 7.4e-32 140.6 105 68.6
Glyma.18G196300 Glycine max HOM05D006952 ORTHO05D008687 9.7e-32 140.2 115 66.1
Manes.09G102000 Manihot esculenta HOM05D006952 ORTHO05D008687 9.7e-32 140.2 115 65.2
Duzib106G1795 Durio zibethinus HOM05D006952 ORTHO05D008687 1.3e-31 139.8 115 65.2
DCAR_024036 Daucus carota HOM05D006952 ORTHO05D008687 1.7e-31 139.4 115 62.6
DCAR_024037 Daucus carota HOM05D006952 ORTHO05D008687 1.7e-31 139.4 115 62.6
Lalb_Chr03g0042961 Lupinus albus HOM05D006952 ORTHO05D008687 1.7e-31 139.4 115 64.3
Lalb_Chr19g0124771 Lupinus albus HOM05D006952 ORTHO05D008687 1.7e-31 139.4 115 63.5
Phvul.008G108100 Phaseolus vulgaris HOM05D006952 ORTHO05D008687 1.7e-31 139.4 115 65.2
Duzib093G2046 Durio zibethinus HOM05D006952 ORTHO05D008687 2.8e-31 138.7 115 63.5
Nn2g11358 Nelumbo nucifera HOM05D006952 ORTHO05D008687 3.7e-31 138.3 115 62.6
Potri.016G110900 Populus trichocarpa HOM05D006952 ORTHO05D008687 3.7e-31 138.3 115 63.5
arahy.Tifrunner.gnm1.ann1.EMW6YX Arachis hypogaea HOM05D006952 ORTHO05D008687 4.8e-31 137.9 112 66.1
Cfa017257 Carpinus fangiana HOM05D006952 ORTHO05D008687 4.8e-31 137.9 115 62.6
Haze_20948 Corylus avellana HOM05D006952 ORTHO05D008687 4.8e-31 137.9 115 62.6
TWI74G1053 Tripterygium wilfordii HOM05D006952 ORTHO05D008687 4.8e-31 137.9 115 65.2
MELO3C009193.2 Cucumis melo HOM05D006952 ORTHO05D008687 6.3e-31 137.5 115 62.6
Hma1.2p1_0244F.1_g101210 Hydrangea macrophylla HOM05D006952 ORTHO05D008687 8.2e-31 137.1 110 65.5
TAR636G2834 Trochodendron aralioides HOM05D006952 ORTHO05D008687 8.2e-31 137.1 115 61.7
Cpa.g.sc56.113 Carica papaya HOM05D006952 ORTHO05D008687 1.1e-30 136.7 113 63.7
MD04G1146800 Malus domestica HOM05D006952 ORTHO05D008687 1.1e-30 136.7 108 63.0
Potri.004G103400 Populus trichocarpa HOM05D006952 ORTHO05D008687 1.8e-30 136.0 115 64.3
Potri.006G096200 Populus trichocarpa HOM05D006952 ORTHO05D008687 1.8e-30 136.0 115 62.6
CsaV3_3G034170 Cucumis sativus L. HOM05D006952 ORTHO05D008687 2.4e-30 135.6 115 60.9
Atru.chr8.2194 Acer truncatum HOM05D006952 ORTHO05D008687 3.1e-30 135.2 115 61.7
PGR031G1789 Punica granatum HOM05D006952 ORTHO05D008687 4.1e-30 134.8 115 62.6
MBI14_g32939_MAGBIO Magnolia biondii HOM05D006952 ORTHO05D008687 5.3e-30 134.4 115 60.0
CANSAT35G1060 Cannabis sativa HOM05D006952 ORTHO05D008687 9.1e-30 133.7 115 59.1
CiPaw.10G154300 Carya illinoinensis HOM05D006952 ORTHO05D008687 2.6e-29 132.1 115 59.1
HanXRQChr13g0406361 Helianthus annuus HOM05D006952 ORTHO05D008687 2.6e-29 132.1 106 62.3
Sed0014444 Sechium edule HOM05D006952 ORTHO05D008687 3.4e-29 131.7 115 60.9
Aqoxy1G00719 Aquilegia oxysepala HOM05D006952 ORTHO05D008687 4.5e-29 131.3 113 59.3
HanXRQChr13g0406321 Helianthus annuus HOM05D006952 ORTHO05D008687 4.5e-29 131.3 113 59.3
Manes.08G087500 Manihot esculenta HOM05D006952 ORTHO05D008687 5.9e-29 131.0 115 61.7
ATR0618G178 Amborella trichopoda HOM05D006952 ORTHO05D008687 7.7e-29 130.6 115 60.0
TPR.G1575 Trifolium pratense HOM05D006952 ORTHO05D008687 7.7e-29 130.6 115 61.7
Eucgr.B02782 Eucalyptus grandis HOM05D006952 ORTHO05D008687 1.3e-28 129.8 115 60.0
Psat0s1978g0040 Pisum sativum HOM05D006952 ORTHO05D008687 1.7e-28 129.4 115 59.1
Nn2g13603 Nelumbo nucifera HOM05D006952 ORTHO05D008687 2.2e-28 129.0 112 59.8
RcHm_v2.0_Chr3g0463891 Rosa chinensis HOM05D006952 ORTHO05D008687 2.2e-28 129.0 110 62.7
HanXRQChr13g0406351 Helianthus annuus HOM05D006952 ORTHO05D008687 2.9e-28 128.6 104 61.5
PSO339G3931 Papaver somniferum HOM05D006952 ORTHO05D008687 2.9e-28 128.6 115 57.4
Medtr7g066800 Medicago truncatula HOM05D006952 ORTHO05D008687 3.8e-28 128.3 115 60.0
Sed0025859 Sechium edule HOM05D006952 ORTHO05D008687 3.8e-28 128.3 111 60.4
Lj3g0025387 Lotus japonicus HOM05D006952 ORTHO05D008687 8.5e-28 127.1 115 59.1
DCAR_008639 Daucus carota HOM05D006952 ORTHO05D008687 1.1e-27 126.7 109 57.8
HPP92_012624 Vanilla planifolia HOM05D006952 ORTHO05D008687 2.5e-27 125.6 110 58.2
CiPaw.09G205900 Carya illinoinensis HOM05D006952 ORTHO05D008687 3.2e-27 125.2 115 57.4
THA.LOC104816220 Tarenaya hassleriana HOM05D006952 ORTHO05D008687 3.2e-27 125.2 108 59.3
Rhsim04G0165900 Rhododendron simsii HOM05D006952 ORTHO05D008687 7.2e-27 124.0 109 59.6
PSO384G3323 Papaver somniferum HOM05D006952 ORTHO05D008687 1.6e-26 122.9 115 56.5
Phvul.010G008400 Phaseolus vulgaris HOM05D006952 ORTHO05D008687 2.7e-26 122.1 115 59.1
Glyma.03G077100 Glycine max HOM05D006952 ORTHO05D008687 3.6e-26 121.7 119 57.1
FAN09G1020 Fragaria x ananassa HOM05D006952 ORTHO05D008687 4.7e-26 121.3 109 58.7
Ah.15g089870 Amaranthus hybridus HOM05D006952 ORTHO05D008687 6.1e-26 120.9 115 57.4
TPR.G5256 Trifolium pratense HOM05D006952 ORTHO05D008687 6.1e-26 120.9 115 51.3
TPR.G6676 Trifolium pratense HOM05D006952 ORTHO05D008687 6.1e-26 120.9 115 51.3
BcaC09g48053 Brassica carinata HOM05D006952 ORTHO05D008687 8.0e-26 120.6 112 56.2
SMO116G0119 Selaginella moellendorffii HOM05D006952 ORTHO05D008687 8.0e-26 120.6 115 55.7
AL3G20160 Arabidopsis lyrata HOM05D006952 ORTHO05D008687 1.0e-25 120.2 113 55.8
BraA01t04315Z Brassica rapa HOM05D006952 ORTHO05D008687 1.0e-25 120.2 112 56.2
Glyma.01G111500 Glycine max HOM05D006952 ORTHO05D008687 1.0e-25 120.2 119 57.1
CARHR083460 Cardamine hirsuta HOM05D006952 ORTHO05D008687 1.8e-25 119.4 113 54.0
Carub.0003s0825 Capsella rubella HOM05D006952 ORTHO05D008687 2.3e-25 119.0 113 55.8
BcaC09g48008 Brassica carinata HOM05D006952 ORTHO05D008687 3.0e-25 118.6 112 55.4
Sp3g07540 Schrenkiella parvula HOM05D006952 ORTHO05D008687 3.0e-25 118.6 113 54.0
BolC1t05474H Brassica oleracea HOM05D006952 ORTHO05D008687 5.2e-25 117.9 112 56.2
AT3G09085 Arabidopsis thaliana HOM05D006952 ORTHO05D008687 8.8e-25 117.1 113 54.9
HanXRQChr13g0406341 Helianthus annuus HOM05D006952 ORTHO05D008687 1.5e-24 116.3 113 51.3
Lsat_1_v5_gn_5_155361 Lactuca sativa HOM05D006952 ORTHO05D008687 1.5e-24 116.3 110 55.5
Thhalv10021991m.g Eutrema salsugineum HOM05D006952 ORTHO05D008687 2.0e-24 115.9 113 53.1
CSS0036371 Camellia sinensis var. sinensis HOM05D006952 ORTHO05D008687 7.4e-24 114.0 104 57.7
Medtr4g014970 Medicago truncatula HOM05D006952 ORTHO05D008687 7.4e-24 114.0 114 50.9
Pp3c15_15480 Physcomitrium patens HOM05D006952 ORTHO05D008687 1.3e-23 113.2 113 52.2
Lsat_1_v5_gn_5_155300 Lactuca sativa HOM05D006952 ORTHO05D008687 2.4e-22 109.0 100 58.0
Nitab4.5_0011723g0010 Nicotiana tabacum HOM05D006952 ORTHO05D008687 2.4e-22 109.0 106 55.7
AagrBONN_evm.TU.Sc2ySwM_228.2345 Anthoceros agrestis HOM05D001533 ORTHO05D003743 1.6e-21 106.3 112 50.0
Pp3c9_14060 Physcomitrium patens HOM05D006952 ORTHO05D008687 2.0e-21 105.9 112 50.0
Zm00001eb011810 Zea mays HOM05D006952 ORTHO05D008687 2.9e-20 102.1 107 48.6
Os03g0265800 Oryza sativa ssp. japonica HOM05D006952 ORTHO05D008687 1.9e-19 99.4 102 48.0
GSVIVG01034013001 Vitis vinifera HOM05D006952 ORTHO05D008687 1.8e-17 92.8 54 83.3
Sabra06G0073900 Salix brachista HOM05D006952 ORTHO05D008687 3.0e-17 92.0 113 52.2
Mapoly0072s0073 Marchantia polymorpha HOM05D006952 ORTHO05D008687 2.0e-16 89.4 108 47.2
SEGI_04409 Sequoiadendron giganteum HOM05D006952 ORTHO05D008687 5.5e-11 71.2 110 40.9
Psat0s1978g0160 Pisum sativum HOM05D006607 ORTHO05D008166 7.2e-11 70.9 40 77.5
RcHm_v2.0_Chr4g0412041 Rosa chinensis HOM05D006952 ORTHO05D008687 4.4e-08 61.6 41 65.9
TAR731G0001 Trochodendron aralioides HOM05D000320 ORTHO05D000532 5.7e-08 61.2 40 70.0


User provided reference genes

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