Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g19900 Coffea canephora HOM05D005905 ORTHO05D005996 9.0e-258 893.3 518 100.0
Cc07_g19890 Coffea canephora HOM05D005905 ORTHO05D005996 1.9e-159 566.6 525 63.0
Lj4A826T50 Lonicera japonica HOM05D005905 ORTHO05D005996 8.9e-72 275.4 507 40.0
QL10p035062 Quercus lobata HOM05D005905 ORTHO05D005996 1.1e-69 268.5 497 37.4
Solyc05g056320.3 Solanum lycopersicum HOM05D005905 ORTHO05D005996 1.4e-69 268.1 531 38.8
Sopen05g034710 Solanum pennellii HOM05D005905 ORTHO05D005996 7.1e-69 265.8 531 38.4
Hma1.2p1_0213F.1_g090480 Hydrangea macrophylla HOM05D005905 ORTHO05D005996 9.2e-69 265.4 445 40.0
Nitab4.5_0000496g0260 Nicotiana tabacum HOM05D005905 ORTHO05D005996 9.2e-69 265.4 542 37.5
PGSC0003DMG400023332 Solanum tuberosum HOM05D005905 ORTHO05D005996 9.2e-69 265.4 530 37.7
Peaxi162Scf00353g00730 Petunia axillaris HOM05D005905 ORTHO05D005996 1.2e-68 265.0 535 37.4
CAN.G1921.10 Capsicum annuum HOM05D005905 ORTHO05D005996 1.0e-67 261.9 540 37.6
RcHm_v2.0_Chr2g0116171 Rosa chinensis HOM05D005905 ORTHO05D005996 6.6e-67 259.2 493 35.9
Nitab4.5_0010070g0020 Nicotiana tabacum HOM05D005905 ORTHO05D005996 1.5e-66 258.1 541 36.8
Prupe.6G175200 Prunus persica HOM05D005905 ORTHO05D005996 5.6e-66 256.1 450 37.3
MD15G1334300 Malus domestica HOM05D005905 ORTHO05D005996 1.6e-65 254.6 499 36.5
Nn5g27344 Nelumbo nucifera HOM05D005905 ORTHO05D005996 2.8e-65 253.8 508 35.4
Thecc.01G145000 Theobroma cacao HOM05D005905 ORTHO05D005996 3.1e-64 250.4 502 36.7
DCAR_019943 Daucus carota HOM05D005905 ORTHO05D005996 5.2e-64 249.6 450 37.8
Cpa.g.sc127.35 Carica papaya HOM05D005905 ORTHO05D005996 1.3e-62 245.0 509 35.4
Haze_19376 Corylus avellana HOM05D005905 ORTHO05D005996 2.2e-62 244.2 494 35.2
COL.COLO4_12147 Corchorus olitorius HOM05D005905 ORTHO05D005996 3.8e-62 243.4 499 36.5
CiPaw.15G186200 Carya illinoinensis HOM05D005905 ORTHO05D005996 1.9e-61 241.1 455 39.8
FvH4_1g22090 Fragaria vesca HOM05D005905 ORTHO05D005996 5.4e-61 239.6 490 35.7
Cfa020942 Carpinus fangiana HOM05D005905 ORTHO05D005996 7.1e-61 239.2 496 35.5
Eucgr.H05059 Eucalyptus grandis HOM05D005905 ORTHO05D005996 9.3e-61 238.8 504 35.1
SalBow8G4641 Salvia bowleyana HOM05D005905 ORTHO05D005996 1.6e-60 238.0 446 38.1
Manes.13G155500 Manihot esculenta HOM05D005905 ORTHO05D005996 3.5e-60 236.9 506 35.6
Atru.chr3.1412 Acer truncatum HOM05D005905 ORTHO05D005996 4.6e-60 236.5 513 35.1
TAR628G0724 Trochodendron aralioides HOM05D005905 ORTHO05D005996 4.6e-60 236.5 519 33.5
MBI03_g20878_MAGBIO Magnolia biondii HOM05D005905 ORTHO05D005996 2.3e-59 234.2 498 35.1
Hund21772 Selenicereus undatus HOM05D005905 ORTHO05D005996 6.6e-59 232.6 500 34.8
Medtr7g081260 Medicago truncatula HOM05D005905 ORTHO05D005996 1.5e-58 231.5 496 38.3
Migut.H02558 Erythranthe guttata HOM05D005905 ORTHO05D005996 1.9e-58 231.1 456 38.4
Gorai.012G048200 Gossypium raimondii HOM05D005905 ORTHO05D005996 5.6e-58 229.6 503 35.6
Glyma.18G248600 Glycine max HOM05D005905 ORTHO05D005996 9.6e-58 228.8 501 36.7
Gohir.D04G042700 Gossypium hirsutum HOM05D005905 ORTHO05D005996 9.6e-58 228.8 510 35.3
arahy.Tifrunner.gnm1.ann1.N289YY Arachis hypogaea HOM05D005905 ORTHO05D005996 2.1e-57 227.6 498 36.5
Gohir.A05G372800 Gossypium hirsutum HOM05D005905 ORTHO05D005996 2.8e-57 227.3 500 35.4
EL10Ac4g09704 Beta vulgaris HOM05D005905 ORTHO05D005996 4.8e-57 226.5 500 34.2
AUR62006929 Chenopodium quinoa HOM05D005905 ORTHO05D005996 4.8e-57 226.5 506 33.8
Manes.17G045200 Manihot esculenta HOM05D005905 ORTHO05D005996 6.2e-57 226.1 494 34.6
arahy.Tifrunner.gnm1.ann1.TUTH4E Arachis hypogaea HOM05D005905 ORTHO05D005996 8.1e-57 225.7 498 36.1
Sabra19G0011400 Salix brachista HOM05D005905 ORTHO05D005996 1.4e-56 224.9 446 38.8
Sabra19G0001400 Salix brachista HOM05D005905 ORTHO05D005996 9.0e-56 222.2 444 38.1
EL10Ac8g19310 Beta vulgaris HOM05D005905 ORTHO05D005996 1.5e-55 221.5 500 34.2
Lj1g0015901 Lotus japonicus HOM05D005905 ORTHO05D005996 1.5e-55 221.5 511 33.9
VMungo1383G1950 Vigna mungo HOM05D005905 ORTHO05D005996 1.5e-55 221.5 491 35.0
ClCG09G007860 Citrullus lanatus HOM05D005905 ORTHO05D005996 2.0e-55 221.1 368 38.9
vmacro12853 Vaccinium macrocarpon HOM05D005905 ORTHO05D005996 2.6e-55 220.7 503 34.0
MSTRG.23227 Avicennia marina HOM05D005905 ORTHO05D005996 3.4e-55 220.3 450 36.9
SGA_v2.0_scaffold12G06257 Striga asiatica HOM05D005905 ORTHO05D005996 1.7e-54 218.0 461 37.1
AUR62000575 Chenopodium quinoa HOM05D005905 ORTHO05D005996 3.8e-54 216.9 526 33.1
Phvul.008G048800 Phaseolus vulgaris HOM05D005905 ORTHO05D005996 4.9e-54 216.5 513 34.9
Lalb_Chr19g0126361 Lupinus albus HOM05D005905 ORTHO05D005996 6.4e-54 216.1 501 34.5
CARHR190020 Cardamine hirsuta HOM05D005905 ORTHO05D005996 1.1e-53 215.3 498 32.7
Ca_08049_v3 Cicer arietinum L. HOM05D005905 ORTHO05D005996 1.4e-53 214.9 499 36.1
Ca_08055_v3 Cicer arietinum L. HOM05D005905 ORTHO05D005996 1.4e-53 214.9 454 37.4
Potri.T013000 Populus trichocarpa HOM05D005905 ORTHO05D005996 5.4e-53 213.0 358 39.7
HanXRQChr04g0110551 Helianthus annuus HOM05D005905 ORTHO05D005996 1.2e-52 211.8 489 34.6
TWI75G0068 Tripterygium wilfordii HOM05D005905 ORTHO05D005996 1.2e-52 211.8 492 34.8
AL6G34790 Arabidopsis lyrata HOM05D005905 ORTHO05D005996 2.1e-52 211.1 503 33.6
Psat3g100200 Pisum sativum HOM05D005905 ORTHO05D005996 2.7e-52 210.7 515 34.6
Sed0023505 Sechium edule HOM05D005905 ORTHO05D005996 2.7e-52 210.7 364 38.7
AT5G23520 Arabidopsis thaliana HOM05D005905 ORTHO05D005996 3.5e-52 210.3 502 33.5
Aa31LG11G2910 Aethionema arabicum HOM05D005905 ORTHO05D005996 4.6e-52 209.9 500 32.6
TPR.G29110 Trifolium pratense HOM05D005905 ORTHO05D005996 4.6e-52 209.9 456 36.8
Sp2g23680 Schrenkiella parvula HOM05D005905 ORTHO05D005996 6.0e-52 209.5 500 33.8
Rhsim10G0138000 Rhododendron simsii HOM05D006573 ORTHO05D008073 1.8e-51 208.0 504 32.9
Carub.0006s2129 Capsella rubella HOM05D005905 ORTHO05D005996 3.0e-51 207.2 496 33.5
CsaV3_7G027220 Cucumis sativus L. HOM05D005905 ORTHO05D005996 3.0e-51 207.2 368 38.6
GSVIVG01000261001 Vitis vinifera HOM05D005905 ORTHO05D005996 8.7e-51 205.7 247 48.2
THA.LOC104800580 Tarenaya hassleriana HOM05D005905 ORTHO05D005996 1.5e-50 204.9 495 31.1
A06p34480 Brassica napus HOM05D005905 ORTHO05D005996 3.3e-50 203.8 504 32.3
BraA06t26376Z Brassica rapa HOM05D005905 ORTHO05D005996 3.3e-50 203.8 511 32.1
MELO3C015720.2 Cucumis melo HOM05D005905 ORTHO05D005996 7.4e-50 202.6 371 37.7
Ciclev10025459m.g Citrus clementina HOM05D005905 ORTHO05D005996 1.3e-49 201.8 323 42.7
C07p44070 Brassica napus HOM05D005905 ORTHO05D005996 1.6e-49 201.4 493 32.7
PSO017G4395 Papaver somniferum HOM05D005905 ORTHO05D005996 4.8e-49 199.9 413 37.0
Duzib187G1788 Durio zibethinus HOM05D005905 ORTHO05D005996 1.4e-48 198.4 478 34.5
BcaNung03737 Brassica carinata HOM05D005905 ORTHO05D005996 5.3e-48 196.4 494 32.8
BolC7t44931H Brassica oleracea HOM05D005905 ORTHO05D005996 5.3e-48 196.4 494 32.8
FAN19G0082 Fragaria x ananassa HOM05D005905 ORTHO05D005996 5.3e-48 196.4 445 33.7
Dinv17124 Davidia involucrata HOM05D010983 ORTHO05D005996 6.9e-48 196.1 212 50.9
Glyma.09G244700 Glycine max HOM05D005905 ORTHO05D005996 1.2e-47 195.3 488 33.6
unitig_899.g14973 Utricularia gibba HOM05D005905 ORTHO05D005996 1.5e-47 194.9 447 32.4
BcaNung03738 Brassica carinata HOM05D005905 ORTHO05D005996 2.0e-47 194.5 498 32.3
BcaNung03739 Brassica carinata HOM05D005905 ORTHO05D005996 2.0e-47 194.5 498 32.3
PGR102G2263 Punica granatum HOM05D005905 ORTHO05D005996 2.6e-47 194.1 452 33.0
PSO170G3497 Papaver somniferum HOM05D005905 ORTHO05D005996 1.7e-46 191.4 413 35.8
Sc09g0001990 Simmondsia chinensis HOM05D005905 ORTHO05D005996 4.9e-46 189.9 443 34.3
Lsat_1_v5_gn_2_40320 Lactuca sativa HOM05D005905 ORTHO05D005996 5.5e-45 186.4 484 31.2
Thhalv10004341m.g Eutrema salsugineum HOM05D005905 ORTHO05D005996 7.1e-45 186.0 481 32.8
FAN28G0415 Fragaria x ananassa HOM05D000290 ORTHO05D002418 9.3e-45 185.7 490 30.8
Os04g0442100 Oryza sativa ssp. japonica HOM05D005905 ORTHO05D005996 2.3e-43 181.0 433 33.7
Aqoxy6G00049 Aquilegia oxysepala HOM05D005905 ORTHO05D005996 8.7e-43 179.1 457 31.9
CDE02G2172 Ceratophyllum demersum HOM05D005905 ORTHO05D005996 1.1e-40 172.2 493 30.6
CANSAT54G0939 Cannabis sativa HOM05D005905 ORTHO05D005996 2.9e-38 164.1 358 33.5
HPP92_011435 Vanilla planifolia HOM05D005905 ORTHO05D005996 1.1e-37 162.2 446 30.3
SEGI_40650 Sequoiadendron giganteum HOM05D005905 ORTHO05D005996 1.6e-36 158.3 364 34.3
FAN23G0918 Fragaria x ananassa HOM05D000290 ORTHO05D002418 8.7e-35 152.5 370 31.6
FAN26G1302 Fragaria x ananassa HOM05D000290 ORTHO05D002418 5.7e-34 149.8 360 32.2
ATR1089G162 Amborella trichopoda HOM05D005905 ORTHO05D005996 2.2e-33 147.9 210 42.4
SHI08855 Sapria himalayana HOM05D005905 ORTHO05D005996 2.2e-33 147.9 234 41.9
BcaNung03858 Brassica carinata HOM05D005905 ORTHO05D005996 4.5e-31 140.2 217 39.2
Atru.chr3.1426 Acer truncatum HOM05D005905 ORTHO05D005996 1.9e-29 134.8 207 41.1
Dinv17121 Davidia involucrata HOM05D005905 ORTHO05D005996 5.1e-27 126.7 285 34.7
Pp3c18_21070 Physcomitrium patens HOM05D005905 ORTHO05D005996 1.7e-25 121.7 238 34.0
QL05p019434 Quercus lobata HOM05D005905 ORTHO05D005996 1.3e-22 112.1 233 34.8
QL09p047332 Quercus lobata HOM05D005905 ORTHO05D005996 2.9e-22 110.9 232 34.9
Pp3c21_2450 Physcomitrium patens HOM05D005905 ORTHO05D005996 6.5e-22 109.8 238 34.9
Ah.06g188350 Amaranthus hybridus HOM05D005905 ORTHO05D005996 9.4e-21 105.9 253 31.6
Lalb_Chr20g0117801 Lupinus albus HOM05D005905 ORTHO05D005996 1.4e-19 102.1 227 33.0
Lalb_Chr20g0117861 Lupinus albus HOM05D005905 ORTHO05D005996 1.4e-19 102.1 227 33.0
QL09p028391 Quercus lobata HOM05D005905 ORTHO05D005996 5.1e-19 100.1 229 32.8
Mapoly0015s0082 Marchantia polymorpha HOM05D005905 ORTHO05D005996 1.5e-18 98.6 236 31.4
HPP92_011427 Vanilla planifolia HOM05D005905 ORTHO05D005996 9.7e-18 95.9 173 34.1
Lj3g0014044 Lotus japonicus HOM05D005905 ORTHO05D005996 4.8e-17 93.6 101 48.5
AagrBONN_evm.TU.Sc2ySwM_368.3232 Anthoceros agrestis HOM05D005905 ORTHO05D005996 8.2e-17 92.8 243 28.4
Ah.06g188320 Amaranthus hybridus HOM05D005905 ORTHO05D005996 3.1e-16 90.9 293 30.4
Hma1.2p1_0213F.1_g090490 Hydrangea macrophylla HOM05D005905 ORTHO05D005996 7.7e-15 86.3 229 33.6
Medtr6g034130 Medicago truncatula HOM05D005905 ORTHO05D005996 3.8e-14 84.0 212 28.3
Medtr6g034165 Medicago truncatula HOM05D005905 ORTHO05D005996 5.5e-13 80.1 115 37.4
TPR.G33754 Trifolium pratense HOM05D005905 ORTHO05D005996 2.3e-11 74.7 98 41.8
SMO239G0053 Selaginella moellendorffii HOM05D005905 ORTHO05D005996 1.1e-10 72.4 114 37.7
Ah.06g188340 Amaranthus hybridus HOM05D005905 ORTHO05D005996 2.6e-10 71.2 239 28.0
Ah.14g088890 Amaranthus hybridus HOM05D005905 ORTHO05D005996 2.2e-09 68.2 184 31.5
Ah.06g188380 Amaranthus hybridus HOM05D005905 ORTHO05D005996 1.6e-07 62.0 92 40.2
RcHm_v2.0_Chr7g0203221 Rosa chinensis HOM05D005281 ORTHO05D006351 1.3e-06 58.9 213 26.3


User provided reference genes

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