Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g19690 Coffea canephora HOM05D005555 ORTHO05D006923 2.7e-239 831.6 428 100.0
Cc05_g13620 Coffea canephora HOM05D005555 ORTHO05D006923 1.7e-230 802.4 426 96.5
MSTRG.6923 Avicennia marina HOM05D005555 ORTHO05D006923 2.5e-184 649.0 427 78.9
Migut.M01757 Erythranthe guttata HOM05D005555 ORTHO05D006923 3.5e-183 645.2 427 78.0
GSVIVG01037655001 Vitis vinifera HOM05D005555 ORTHO05D006923 1.1e-181 640.2 431 77.7
Solyc12g005050.2 Solanum lycopersicum HOM05D005555 ORTHO05D006923 1.1e-179 633.6 426 77.2
TWI39G0347 Tripterygium wilfordii HOM05D005555 ORTHO05D006923 3.1e-179 632.1 422 78.2
Sopen12g001050 Solanum pennellii HOM05D005555 ORTHO05D006923 9.0e-179 630.6 426 76.8
CSS0046165 Camellia sinensis var. sinensis HOM05D005555 ORTHO05D006923 1.0e-177 627.1 428 77.1
Eucgr.F03470 Eucalyptus grandis HOM05D005555 ORTHO05D006923 1.7e-177 626.3 434 76.0
Gorai.009G438400 Gossypium raimondii HOM05D005555 ORTHO05D006923 2.9e-177 625.5 422 77.3
PGSC0003DMG400027869 Solanum tuberosum HOM05D005555 ORTHO05D006923 2.5e-176 622.5 426 75.8
Dinv22259 Davidia involucrata HOM05D005555 ORTHO05D006923 4.2e-176 621.7 427 76.1
Nitab4.5_0008473g0010 Nicotiana tabacum HOM05D005555 ORTHO05D006923 1.6e-175 619.8 426 74.6
SGA_v2.0_scaffold172G39000 Striga asiatica HOM05D005555 ORTHO05D006923 1.6e-175 619.8 434 75.1
Duzib268G1179 Durio zibethinus HOM05D005555 ORTHO05D006923 2.3e-174 615.9 422 76.1
TAR627G0887 Trochodendron aralioides HOM05D005555 ORTHO05D006923 4.3e-173 611.7 431 74.5
Sed0005603 Sechium edule HOM05D005555 ORTHO05D006923 5.3e-171 604.7 422 74.6
Gohir.A04G016500 Gossypium hirsutum HOM05D005555 ORTHO05D006923 5.9e-170 601.3 422 74.9
QL08p010014 Quercus lobata HOM05D005555 ORTHO05D006923 3.8e-169 598.6 426 73.9
Rhsim06G0217300 Rhododendron simsii HOM05D005555 ORTHO05D006923 3.8e-169 598.6 445 70.8
Cpa.g.sc12.303 Carica papaya HOM05D005555 ORTHO05D006923 1.4e-168 596.7 426 73.2
Manes.15G071400 Manihot esculenta HOM05D005555 ORTHO05D006923 3.2e-168 595.5 427 74.5
Nn1g07133 Nelumbo nucifera HOM05D005555 ORTHO05D006923 5.5e-168 594.7 429 72.0
Ciclev10008353m.g Citrus clementina HOM05D005555 ORTHO05D006923 9.4e-168 594.0 429 74.8
CsaV3_7G021840 Cucumis sativus L. HOM05D005555 ORTHO05D006923 9.4e-168 594.0 422 73.5
Thecc.07G035900 Theobroma cacao HOM05D005555 ORTHO05D006923 9.4e-168 594.0 422 74.6
Aqoxy1G02148 Aquilegia oxysepala HOM05D005555 ORTHO05D006923 1.8e-166 589.7 420 73.1
PSO541G4760 Papaver somniferum HOM05D005555 ORTHO05D006923 1.8e-166 589.7 428 72.4
CSS0038584 Camellia sinensis var. sinensis HOM05D005555 ORTHO05D006923 3.0e-166 589.0 430 73.5
Gohir.D05G369700 Gossypium hirsutum HOM05D005555 ORTHO05D006923 3.0e-166 589.0 422 73.5
ECA240G0357 Erigeron canadensis HOM05D005555 ORTHO05D006923 5.1e-166 588.2 420 72.6
CAN.G542.3 Capsicum annuum HOM05D005555 ORTHO05D006923 1.1e-165 587.0 426 71.4
THA.LOC104817858 Tarenaya hassleriana HOM05D005555 ORTHO05D006923 1.1e-165 587.0 420 74.0
Actinidia35345 Actinidia chinensis HOM05D005555 ORTHO05D006923 1.5e-165 586.6 428 72.2
Lj6g0008930 Lotus japonicus HOM05D005555 ORTHO05D006923 5.7e-165 584.7 429 69.7
Hund15555 Selenicereus undatus HOM05D005555 ORTHO05D006923 9.7e-165 583.9 424 71.7
Nitab4.5_0000981g0050 Nicotiana tabacum HOM05D005555 ORTHO05D006923 3.7e-164 582.0 465 68.0
Sp1g37550 Schrenkiella parvula HOM05D005555 ORTHO05D006923 3.7e-164 582.0 419 74.7
Carub.0001s3974 Capsella rubella HOM05D005555 ORTHO05D006923 4.8e-164 581.6 419 74.5
BcaC08g43248 Brassica carinata HOM05D005555 ORTHO05D006923 1.1e-163 580.5 419 74.2
C06p05960 Brassica napus HOM05D005555 ORTHO05D006923 1.1e-163 580.5 419 74.2
BolC6t35709H Brassica oleracea HOM05D005555 ORTHO05D006923 1.1e-163 580.5 419 74.2
CiPaw.12G130100 Carya illinoinensis HOM05D005555 ORTHO05D006923 1.1e-163 580.5 422 71.8
A06p02920 Brassica napus HOM05D005555 ORTHO05D006923 1.4e-163 580.1 419 74.2
BraA06t23497Z Brassica rapa HOM05D005555 ORTHO05D006923 1.4e-163 580.1 419 74.2
AL1G58400 Arabidopsis lyrata HOM05D005555 ORTHO05D006923 4.1e-163 578.6 419 74.0
Lj8C169T24 Lonicera japonica HOM05D005555 ORTHO05D006923 4.1e-163 578.6 461 68.5
Lalb_Chr20g0113831 Lupinus albus HOM05D005555 ORTHO05D006923 4.1e-163 578.6 428 70.3
RcHm_v2.0_Chr2g0139231 Rosa chinensis HOM05D005555 ORTHO05D006923 4.1e-163 578.6 428 71.3
BcaC08g43250 Brassica carinata HOM05D005555 ORTHO05D006923 9.1e-163 577.4 419 73.7
AT1G50710 Arabidopsis thaliana HOM05D005555 ORTHO05D006923 1.2e-162 577.0 419 74.0
TPR.G33802 Trifolium pratense HOM05D005555 ORTHO05D006923 1.5e-162 576.6 439 70.4
CiPaw.11G190000 Carya illinoinensis HOM05D005555 ORTHO05D006923 4.5e-162 575.1 429 71.3
arahy.Tifrunner.gnm1.ann1.P3VUIG Arachis hypogaea HOM05D005555 ORTHO05D006923 5.9e-162 574.7 430 70.5
arahy.Tifrunner.gnm1.ann1.UR7PB1 Arachis hypogaea HOM05D005555 ORTHO05D006923 1.0e-161 573.9 430 70.2
VMungo0540G1244 Vigna mungo HOM05D005555 ORTHO05D006923 1.4e-160 570.1 430 69.5
PSO675G4173 Papaver somniferum HOM05D005555 ORTHO05D006923 3.2e-160 568.9 428 70.1
Thhalv10011513m.g Eutrema salsugineum HOM05D005555 ORTHO05D006923 7.2e-160 567.8 419 72.8
EL10Ac2g03146 Beta vulgaris HOM05D005555 ORTHO05D006923 9.4e-160 567.4 444 68.5
CANSAT11G1088 Cannabis sativa HOM05D005555 ORTHO05D006923 1.2e-159 567.0 428 70.8
PGR031G0129 Punica granatum HOM05D005555 ORTHO05D006923 1.2e-159 567.0 426 70.2
CARHR040810 Cardamine hirsuta HOM05D005555 ORTHO05D006923 2.1e-159 566.2 419 72.6
arahy.Tifrunner.gnm1.ann1.QY89IE Arachis hypogaea HOM05D005555 ORTHO05D006923 1.4e-158 563.5 428 69.6
FAN14G2902 Fragaria x ananassa HOM05D005555 ORTHO05D006923 1.4e-158 563.5 421 69.8
Gorai.009G438500 Gossypium raimondii HOM05D005555 ORTHO05D006923 1.4e-158 563.5 422 71.3
Psat5g178680 Pisum sativum HOM05D005555 ORTHO05D006923 1.4e-158 563.5 430 68.6
Prupe.3G065100 Prunus persica HOM05D005555 ORTHO05D006923 1.8e-158 563.1 418 71.8
BcaB02g11175 Brassica carinata HOM05D005555 ORTHO05D006923 2.3e-158 562.8 419 72.3
Medtr3g052180 Medicago truncatula HOM05D005555 ORTHO05D006923 1.5e-157 560.1 428 68.5
Ah.10g032310 Amaranthus hybridus HOM05D005555 ORTHO05D006923 2.0e-157 559.7 426 70.2
Glyma.08G316800 Glycine max HOM05D005555 ORTHO05D006923 2.6e-157 559.3 428 68.7
unitig_744.g24404 Utricularia gibba HOM05D005555 ORTHO05D006923 2.6e-157 559.3 428 69.2
Peaxi162Scf00660g00816 Petunia axillaris HOM05D005555 ORTHO05D006923 4.4e-157 558.5 383 75.7
Potri.011G090800 Populus trichocarpa HOM05D005555 ORTHO05D006923 4.4e-157 558.5 430 71.6
DCAR_016709 Daucus carota HOM05D005555 ORTHO05D006923 9.7e-157 557.4 423 69.5
Lsat_1_v5_gn_2_47780 Lactuca sativa HOM05D005555 ORTHO05D006923 9.7e-157 557.4 427 70.5
Phvul.006G044000 Phaseolus vulgaris HOM05D005555 ORTHO05D006923 1.3e-156 557.0 429 68.3
FAN05G3309 Fragaria x ananassa HOM05D005555 ORTHO05D006923 6.3e-156 554.7 421 69.4
Glyma.18G096300 Glycine max HOM05D005555 ORTHO05D006923 6.3e-156 554.7 428 67.5
HanXRQChr03g0076481 Helianthus annuus HOM05D005555 ORTHO05D006923 8.2e-156 554.3 407 71.3
ClCG09G010820 Citrullus lanatus HOM05D005555 ORTHO05D006923 1.1e-155 553.9 467 66.0
Aa31LG10G3630 Aethionema arabicum HOM05D005555 ORTHO05D006923 5.3e-155 551.6 423 70.4
BraA05t20906Z Brassica rapa HOM05D005555 ORTHO05D006923 5.3e-155 551.6 415 71.6
MD17G1190200 Malus domestica HOM05D005555 ORTHO05D006923 5.3e-155 551.6 430 68.8
Medtr5g049170 Medicago truncatula HOM05D005555 ORTHO05D006923 2.0e-154 549.7 428 67.3
Nn1g03520 Nelumbo nucifera HOM05D005555 ORTHO05D006923 2.6e-154 549.3 428 66.8
MELO3C013162.2 Cucumis melo HOM05D005555 ORTHO05D006923 5.9e-154 548.1 433 68.8
A05p19990 Brassica napus HOM05D005555 ORTHO05D006923 1.0e-153 547.4 415 71.6
Sc03g0008570 Simmondsia chinensis HOM05D005555 ORTHO05D006923 1.0e-153 547.4 380 74.7
CSS0007038 Camellia sinensis var. sinensis HOM05D005555 ORTHO05D006923 6.5e-153 544.7 437 68.9
Atru.chr2.3417 Acer truncatum HOM05D005555 ORTHO05D006923 8.5e-153 544.3 426 69.0
CDE04G3207 Ceratophyllum demersum HOM05D005555 ORTHO05D006923 2.5e-152 542.7 429 66.0
FAN02G4472 Fragaria x ananassa HOM05D005555 ORTHO05D006923 8.8e-150 534.3 421 67.5
DCAR_001508 Daucus carota HOM05D005555 ORTHO05D006923 7.5e-149 531.2 423 67.6
MD09G1208700 Malus domestica HOM05D005555 ORTHO05D006923 2.8e-148 529.3 427 67.0
MBI05_g12021_MAGBIO Magnolia biondii HOM05D005555 ORTHO05D006923 7.0e-147 524.6 429 67.4
arahy.Tifrunner.gnm1.ann1.GVQ212 Arachis hypogaea HOM05D005555 ORTHO05D006923 2.7e-146 522.7 463 61.8
MD03G1200100 Malus domestica HOM05D005555 ORTHO05D006923 6.5e-145 518.1 432 65.0
BcaB07g33510 Brassica carinata HOM05D005555 ORTHO05D006923 7.2e-144 514.6 433 67.7
Sabra11G0086200 Salix brachista HOM05D005555 ORTHO05D006923 2.7e-143 512.7 430 67.4
vmacro11723 Vaccinium macrocarpon HOM05D005555 ORTHO05D006923 3.6e-143 512.3 514 57.6
AUR62018195 Chenopodium quinoa HOM05D005555 ORTHO05D006923 8.8e-142 507.7 425 64.9
Ca_14731_v3 Cicer arietinum L. HOM05D005555 ORTHO05D006923 1.5e-141 506.9 511 56.4
ATR0752G192 Amborella trichopoda HOM05D005555 ORTHO05D006923 1.7e-140 503.4 425 63.1
HanXRQChr05g0134351 Helianthus annuus HOM05D005555 ORTHO05D006923 3.8e-137 492.3 427 63.9
RcHm_v2.0_Chr5g0039771 Rosa chinensis HOM05D005555 ORTHO05D006923 4.4e-133 478.8 416 60.8
Cfa020338 Carpinus fangiana HOM05D005555 ORTHO05D006923 8.3e-132 474.6 388 68.3
Dinv40759 Davidia involucrata HOM05D005555 ORTHO05D006923 1.1e-131 474.2 380 69.7
HPP92_010410 Vanilla planifolia HOM05D005555 ORTHO05D006923 7.0e-131 471.5 428 61.2
Haze_09680 Corylus avellana HOM05D005555 ORTHO05D006923 1.7e-129 466.8 489 57.3
Gohir.D05G370300 Gossypium hirsutum HOM05D005555 ORTHO05D006923 3.9e-129 465.7 378 68.0
Gohir.D05G369900 Gossypium hirsutum HOM05D005555 ORTHO05D006923 1.0e-126 457.6 422 61.8
FvH4_3g22760 Fragaria vesca HOM05D005555 ORTHO05D006923 1.2e-125 454.1 416 58.9
Mapoly0032s0110 Marchantia polymorpha HOM05D005555 ORTHO05D006923 2.3e-121 439.9 433 55.7
SMO352G0045 Selaginella moellendorffii HOM05D005555 ORTHO05D006923 5.0e-121 438.7 411 57.2
FAN16G3656 Fragaria x ananassa HOM05D005555 ORTHO05D006923 4.0e-118 429.1 399 58.1
Prupe.4G214200 Prunus persica HOM05D005555 ORTHO05D006923 1.7e-116 423.7 362 63.0
Zm00001eb230170 Zea mays HOM05D005555 ORTHO05D006923 2.1e-114 416.8 413 56.7
TPR.G5778 Trifolium pratense HOM05D005555 ORTHO05D006923 2.7e-114 416.4 344 65.4
Sed0020027 Sechium edule HOM05D005555 ORTHO05D006923 3.9e-113 412.5 388 60.8
FvH4_6g31880 Fragaria vesca HOM05D005555 ORTHO05D006923 8.6e-113 411.4 318 67.9
Pp3c17_11280 Physcomitrium patens HOM05D005555 ORTHO05D006923 2.1e-111 406.8 421 53.2
arahy.Tifrunner.gnm1.ann1.92YVPD Arachis hypogaea HOM05D005555 ORTHO05D006923 2.8e-111 406.4 432 54.2
AUR62038682 Chenopodium quinoa HOM05D005555 ORTHO05D006923 5.6e-104 382.1 427 53.4
FAN25G0297 Fragaria x ananassa HOM05D005555 ORTHO05D006923 2.0e-101 373.6 355 57.7
arahy.Tifrunner.gnm1.ann1.21WID0 Arachis hypogaea HOM05D005555 ORTHO05D006923 5.8e-101 372.1 434 49.8
Medtr5g049150 Medicago truncatula HOM05D005555 ORTHO05D006923 9.3e-67 258.5 221 63.3
CBR_g19746 Chara braunii HOM05D005555 ORTHO05D006923 2.2e-63 247.3 385 37.9
CBR_g6714 Chara braunii HOM05D005555 ORTHO05D006923 3.2e-59 233.4 425 36.5
Os02g0119100 Oryza sativa ssp. japonica HOM05D005555 ORTHO05D006923 4.5e-37 159.8 204 49.0
TPR.G5733 Trifolium pratense HOM05D005555 ORTHO05D006923 9.8e-24 115.5 83 71.1
Lsat_1_v5_gn_9_94361 Lactuca sativa HOM05D005555 ORTHO05D006923 3.7e-15 87.0 55 70.9
Hma1.2p1_0206F.1_g087650 Hydrangea macrophylla HOM05D005555 ORTHO05D006923 2.9e-12 77.4 44 81.8
Hma1.2p1_0545F.1_g176020 Hydrangea macrophylla HOM05D005555 ORTHO05D006923 2.9e-12 77.4 44 81.8
Actinidia13832 Actinidia chinensis HOM05D005555 ORTHO05D006923 8.9e-09 65.9 53 69.8


User provided reference genes

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