Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g19330 Coffea canephora HOM05D005757 ORTHO05D007090 3.7e-28 127.5 64 100.0
CANSAT01G1027 Cannabis sativa HOM05D005757 ORTHO05D007090 3.9e-17 90.9 51 88.2
Dinv16327 Davidia involucrata HOM05D005757 ORTHO05D007090 1.5e-16 89.0 49 89.8
TPR.G33548 Trifolium pratense HOM05D005757 ORTHO05D007090 1.5e-16 89.0 50 88.0
HanXRQChr01g0019111 Helianthus annuus HOM05D005757 ORTHO05D007090 1.9e-16 88.6 49 89.8
FvH4_1g24990 Fragaria vesca HOM05D005757 ORTHO05D007090 2.5e-16 88.2 49 89.8
Gohir.A05G381400 Gossypium hirsutum HOM05D005757 ORTHO05D007090 3.3e-16 87.8 49 83.7
Gohir.D04G033900 Gossypium hirsutum HOM05D005757 ORTHO05D007090 3.3e-16 87.8 49 83.7
MSTRG.23485 Avicennia marina HOM05D005757 ORTHO05D007090 5.6e-16 87.0 50 84.0
Glyma.06G156000 Glycine max HOM05D005757 ORTHO05D007090 5.6e-16 87.0 49 85.7
CSS0011153 Camellia sinensis var. sinensis HOM05D005757 ORTHO05D007090 7.3e-16 86.7 49 87.8
FAN23G0434 Fragaria x ananassa HOM05D005757 ORTHO05D007090 7.3e-16 86.7 49 87.8
FAN26G2810 Fragaria x ananassa HOM05D005757 ORTHO05D007090 7.3e-16 86.7 49 87.8
Lj1g0019812 Lotus japonicus HOM05D005757 ORTHO05D007090 7.3e-16 86.7 50 84.0
RcHm_v2.0_Chr2g0122631 Rosa chinensis HOM05D005757 ORTHO05D007090 7.3e-16 86.7 49 87.8
Psat5g060320 Pisum sativum HOM05D005757 ORTHO05D007090 9.5e-16 86.3 50 86.0
Lalb_Chr11g0068621 Lupinus albus HOM05D005757 ORTHO05D007090 1.2e-15 85.9 49 83.7
Cpa.g.sc37.11 Carica papaya HOM05D005757 ORTHO05D007090 1.6e-15 85.5 49 83.7
ECA248G3451 Erigeron canadensis HOM05D005757 ORTHO05D007090 1.6e-15 85.5 49 85.7
Lsat_1_v5_gn_7_106341 Lactuca sativa HOM05D005757 ORTHO05D007090 1.6e-15 85.5 49 83.7
Medtr3g096710 Medicago truncatula HOM05D005757 ORTHO05D007090 1.6e-15 85.5 49 85.7
Rhsim08G0000300 Rhododendron simsii HOM05D005757 ORTHO05D007090 1.6e-15 85.5 49 85.7
Glyma.04G210000 Glycine max HOM05D005757 ORTHO05D007090 2.1e-15 85.1 49 81.6
Phvul.009G154300 Phaseolus vulgaris HOM05D005757 ORTHO05D007090 2.1e-15 85.1 49 83.7
PGR119G2343 Punica granatum HOM05D005757 ORTHO05D007090 2.1e-15 85.1 49 83.7
VMungo1309G1065 Vigna mungo HOM05D005757 ORTHO05D007090 2.1e-15 85.1 49 83.7
Atru.chr4.999 Acer truncatum HOM05D005757 ORTHO05D007090 2.8e-15 84.7 49 83.7
Aa31LG3G17760 Aethionema arabicum HOM05D005757 ORTHO05D007090 2.8e-15 84.7 49 83.7
Ca_16984_v3 Cicer arietinum L. HOM05D005757 ORTHO05D007090 2.8e-15 84.7 49 83.7
FAN28G1123 Fragaria x ananassa HOM05D005757 ORTHO05D007090 2.8e-15 84.7 49 85.7
Nitab4.5_0004105g0030 Nicotiana tabacum HOM05D005757 ORTHO05D007090 2.8e-15 84.7 49 81.6
Prupe.4G275900 Prunus persica HOM05D005757 ORTHO05D007090 3.6e-15 84.3 49 85.7
THA.LOC104818419 Tarenaya hassleriana HOM05D005757 ORTHO05D007090 3.6e-15 84.3 49 83.7
Actinidia16522 Actinidia chinensis HOM05D005757 ORTHO05D007090 6.2e-15 83.6 49 81.6
CAN.G186.1 Capsicum annuum HOM05D005757 ORTHO05D007090 6.2e-15 83.6 49 81.6
Migut.H00828 Erythranthe guttata HOM05D005757 ORTHO05D007090 6.2e-15 83.6 50 80.0
AUR62006868 Chenopodium quinoa HOM05D005757 ORTHO05D007090 8.0e-15 83.2 54 75.9
Eucgr.I00121 Eucalyptus grandis HOM05D005757 ORTHO05D007090 8.0e-15 83.2 49 79.6
Thhalv10013744m.g Eutrema salsugineum HOM05D005757 ORTHO05D007090 1.0e-14 82.8 49 81.6
MD00G1091800 Malus domestica HOM05D005757 ORTHO05D007090 1.4e-14 82.4 49 83.7
QL10p041184 Quercus lobata HOM05D005757 ORTHO05D007090 1.4e-14 82.4 49 81.6
QL10p041477 Quercus lobata HOM05D005757 ORTHO05D007090 1.4e-14 82.4 49 81.6
Solyc04g009430.3 Solanum lycopersicum HOM05D005757 ORTHO05D007090 1.4e-14 82.4 51 74.5
Sopen04g004560 Solanum pennellii HOM05D005757 ORTHO05D007090 1.4e-14 82.4 51 74.5
GSVIVG01022342001 Vitis vinifera HOM05D005757 ORTHO05D007090 1.4e-14 82.4 50 82.0
Peaxi162Scf00842g00217 Petunia axillaris HOM05D005757 ORTHO05D007090 1.8e-14 82.0 49 79.6
Sp6g34070 Schrenkiella parvula HOM05D005757 ORTHO05D007090 1.8e-14 82.0 49 79.6
Thecc.01G137800 Theobroma cacao HOM05D005757 ORTHO05D007090 2.3e-14 81.6 49 79.6
AL6G19620 Arabidopsis lyrata HOM05D005757 ORTHO05D007090 4.0e-14 80.9 49 81.6
Carub.0006s0779 Capsella rubella HOM05D005757 ORTHO05D007090 4.0e-14 80.9 49 81.6
CARHR204190 Cardamine hirsuta HOM05D005757 ORTHO05D007090 4.0e-14 80.9 49 81.6
Nitab4.5_0010993g0010 Nicotiana tabacum HOM05D005757 ORTHO05D007090 4.0e-14 80.9 49 77.6
CsaV3_2G019560 Cucumis sativus L. HOM05D005757 ORTHO05D007090 5.2e-14 80.5 49 79.6
Oeu037858.1 Olea europaea HOM05D005757 ORTHO05D007090 6.8e-14 80.1 49 81.6
PGSC0003DMG400032556 Solanum tuberosum HOM05D005757 ORTHO05D007090 6.8e-14 80.1 51 72.5
MELO3C023217.2 Cucumis melo HOM05D005757 ORTHO05D007090 8.9e-14 79.7 49 77.6
Lj7C583G3 Lonicera japonica HOM05D005757 ORTHO05D007090 8.9e-14 79.7 51 78.4
AT5G09230 Arabidopsis thaliana HOM05D005757 ORTHO05D007090 1.2e-13 79.3 48 81.2
TWI75G1840 Tripterygium wilfordii HOM05D005757 ORTHO05D007090 1.5e-13 79.0 49 79.6
BcaB05g21563 Brassica carinata HOM05D005757 ORTHO05D007090 2.0e-13 78.6 49 77.6
TAR625G0433 Trochodendron aralioides HOM05D005757 ORTHO05D007090 2.0e-13 78.6 49 75.5
BcaC03g13245 Brassica carinata HOM05D005757 ORTHO05D007090 2.6e-13 78.2 49 77.6
C02p03770 Brassica napus HOM05D005757 ORTHO05D007090 2.6e-13 78.2 49 77.6
BolC2t06338H Brassica oleracea HOM05D005757 ORTHO05D007090 2.6e-13 78.2 49 77.6
BraA02t04972Z Brassica rapa HOM05D005757 ORTHO05D007090 2.6e-13 78.2 49 77.6
QL10p041201 Quercus lobata HOM05D005757 ORTHO05D007090 2.6e-13 78.2 48 79.2
CiPaw.04G079300 Carya illinoinensis HOM05D005757 ORTHO05D007090 3.4e-13 77.8 49 79.6
DCAR_009593 Daucus carota HOM05D005757 ORTHO05D007090 3.4e-13 77.8 49 81.6
Manes.12G147700 Manihot esculenta HOM05D005757 ORTHO05D007090 4.4e-13 77.4 49 75.5
Manes.12G159200 Manihot esculenta HOM05D005757 ORTHO05D007090 4.4e-13 77.4 49 75.5
Hund07233 Selenicereus undatus HOM05D005757 ORTHO05D007090 4.4e-13 77.4 49 73.5
unitig_52.g17615 Utricularia gibba HOM05D005757 ORTHO05D007090 4.4e-13 77.4 49 79.6
EL10Ac4g09631 Beta vulgaris HOM05D005757 ORTHO05D007090 5.8e-13 77.0 54 72.2
Nn1g08970 Nelumbo nucifera HOM05D005757 ORTHO05D007090 5.8e-13 77.0 49 79.6
PSO675G6061 Papaver somniferum HOM05D005757 ORTHO05D007090 5.8e-13 77.0 48 77.1
PSO541G2210 Papaver somniferum HOM05D005757 ORTHO05D007090 2.2e-12 75.1 49 75.5
Ciclev10001356m.g Citrus clementina HOM05D005757 ORTHO05D007090 6.4e-12 73.6 49 71.4
HPP92_011392 Vanilla planifolia HOM05D005757 ORTHO05D007090 6.4e-12 73.6 49 73.5
Aqoxy6G00314 Aquilegia oxysepala HOM05D005757 ORTHO05D007090 1.9e-11 72.0 49 73.5
CDE08G1654 Ceratophyllum demersum HOM05D005757 ORTHO05D007090 1.9e-11 72.0 54 63.0
ECA248G1240 Erigeron canadensis HOM05D005757 ORTHO05D007090 4.1e-11 70.9 49 69.4
Sabra05G0055900 Salix brachista HOM05D005757 ORTHO05D007090 1.2e-10 69.3 82 51.2
ATR0584G010 Amborella trichopoda HOM05D005757 ORTHO05D007090 1.6e-10 68.9 49 67.3
AagrBONN_evm.TU.Sc2ySwM_228.4835 Anthoceros agrestis HOM05D005757 ORTHO05D007090 1.6e-10 68.9 48 66.7
Os12g0179800 Oryza sativa ssp. japonica HOM05D005757 ORTHO05D007090 1.7e-09 65.5 48 64.6
COL.COLO4_35820 Corchorus olitorius HOM05D005757 ORTHO05D007090 2.3e-09 65.1 39 82.1
Zm00001eb408300 Zea mays HOM05D005757 ORTHO05D007090 2.3e-09 65.1 48 66.7
Pp3c16_14390 Physcomitrium patens HOM05D005757 ORTHO05D007090 3.9e-09 64.3 49 63.3
Cfa002199 Carpinus fangiana HOM05D005757 ORTHO05D007090 8.6e-09 63.2 41 80.5
SGA_v2.0_scaffold20G08952 Striga asiatica HOM05D005757 ORTHO05D007090 8.6e-09 63.2 36 83.3
vmacro18686 Vaccinium macrocarpon HOM05D005757 ORTHO05D007090 8.6e-09 63.2 36 83.3
AUR62000523 Chenopodium quinoa HOM05D005757 ORTHO05D007090 1.6e-07 58.9 35 80.0
QL05p088935 Quercus lobata HOM05D005757 ORTHO05D007090 3.6e-07 57.8 34 82.4
QL05p089323 Quercus lobata HOM05D005757 ORTHO05D007090 3.6e-07 57.8 34 82.4
Mapoly0093s0042 Marchantia polymorpha HOM05D005757 ORTHO05D007090 1.1e-06 56.2 48 56.2
ClCG02G000280 Citrullus lanatus HOM05D005757 ORTHO05D007090 4.0e-06 54.3 33 81.8


User provided reference genes

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