Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g18460 Coffea canephora HOM05D004292 ORTHO05D005206 5.0e-45 184.1 95 100.0
Cc11_g08440 Coffea canephora HOM05D004292 ORTHO05D005206 2.0e-25 119.0 74 87.8
Migut.L00354 Erythranthe guttata HOM05D004292 ORTHO05D005206 3.1e-23 111.7 75 80.0
Migut.L00977 Erythranthe guttata HOM05D004292 ORTHO05D005206 3.1e-23 111.7 75 80.0
TAR622G0066 Trochodendron aralioides HOM05D004292 ORTHO05D005206 3.1e-23 111.7 75 77.3
FvH4_4g32670 Fragaria vesca HOM05D004292 ORTHO05D005206 4.1e-23 111.3 75 80.0
FAN07G2049 Fragaria x ananassa HOM05D004292 ORTHO05D005206 4.1e-23 111.3 75 80.0
FAN12G2104 Fragaria x ananassa HOM05D004292 ORTHO05D005206 4.1e-23 111.3 75 80.0
FAN22G2140 Fragaria x ananassa HOM05D004292 ORTHO05D005206 4.1e-23 111.3 75 80.0
RcHm_v2.0_Chr4g0441581 Rosa chinensis HOM05D004292 ORTHO05D005206 4.1e-23 111.3 75 80.0
Hma1.2p1_0096F.1_g047700 Hydrangea macrophylla HOM05D004292 ORTHO05D005206 5.3e-23 110.9 75 78.7
FAN17G0423 Fragaria x ananassa HOM05D004292 ORTHO05D005206 9.1e-23 110.2 75 78.7
Lj6C744T5 Lonicera japonica HOM05D004292 ORTHO05D005206 9.1e-23 110.2 75 80.0
Atru.chr11.473 Acer truncatum HOM05D004292 ORTHO05D005206 2.7e-22 108.6 75 77.3
MSTRG.2160 Avicennia marina HOM05D004292 ORTHO05D005206 2.7e-22 108.6 75 76.0
SGA_v2.0_scaffold234G43615 Striga asiatica HOM05D004292 ORTHO05D005206 2.7e-22 108.6 75 77.3
GSVIVG01011737001 Vitis vinifera HOM05D004292 ORTHO05D005206 2.7e-22 108.6 75 77.3
MD13G1023800 Malus domestica HOM05D004292 ORTHO05D005206 3.5e-22 108.2 75 77.3
Oeu018604.1 Olea europaea HOM05D004292 ORTHO05D005206 3.5e-22 108.2 75 77.3
Prupe.1G326900 Prunus persica HOM05D004292 ORTHO05D005206 3.5e-22 108.2 75 77.3
Aqoxy3G00082 Aquilegia oxysepala HOM05D004292 ORTHO05D005206 4.5e-22 107.8 75 74.7
CSS0026867 Camellia sinensis var. sinensis HOM05D004292 ORTHO05D005206 5.9e-22 107.5 75 76.0
Carub.0001s2263 Capsella rubella HOM05D004292 ORTHO05D005206 5.9e-22 107.5 75 77.3
Duzib251G0662 Durio zibethinus HOM05D004292 ORTHO05D005206 5.9e-22 107.5 75 76.0
PSO017G6162 Papaver somniferum HOM05D004292 ORTHO05D005206 5.9e-22 107.5 84 69.0
PSO478G0265 Papaver somniferum HOM05D004292 ORTHO05D005206 5.9e-22 107.5 84 69.0
PGR119G0156 Punica granatum HOM05D004292 ORTHO05D005206 5.9e-22 107.5 69 79.7
TAR374G0923 Trochodendron aralioides HOM05D004292 ORTHO05D005206 5.9e-22 107.5 75 76.0
AL1G36680 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 7.7e-22 107.1 75 76.0
AT1G23110 Arabidopsis thaliana HOM05D004292 ORTHO05D005206 7.7e-22 107.1 75 76.0
A07p14020 Brassica napus HOM05D004292 ORTHO05D005206 7.7e-22 107.1 75 77.3
BraA07t29156Z Brassica rapa HOM05D004292 ORTHO05D005206 7.7e-22 107.1 75 77.3
MD16G1026500 Malus domestica HOM05D004292 ORTHO05D005206 7.7e-22 107.1 75 77.3
Peaxi162Scf00253g01121 Petunia axillaris HOM05D004292 ORTHO05D005206 7.7e-22 107.1 75 76.0
Sp1g20550 Schrenkiella parvula HOM05D004292 ORTHO05D005206 7.7e-22 107.1 75 76.0
BcaC06g35023 Brassica carinata HOM05D004292 ORTHO05D005206 1.0e-21 106.7 75 76.0
C07p20600 Brassica napus HOM05D004292 ORTHO05D005206 1.0e-21 106.7 75 76.0
BolC7t42590H Brassica oleracea HOM05D004292 ORTHO05D005206 1.0e-21 106.7 75 76.0
COL.COLO4_13153 Corchorus olitorius HOM05D004292 ORTHO05D005206 1.0e-21 106.7 75 74.7
Dinv14417 Davidia involucrata HOM05D004292 ORTHO05D005206 1.0e-21 106.7 75 74.7
Lj3C871G6 Lonicera japonica HOM05D004292 ORTHO05D005206 1.0e-21 106.7 75 76.0
Sabra10G0081700 Salix brachista HOM05D004292 ORTHO05D005206 1.0e-21 106.7 75 77.3
Actinidia36661 Actinidia chinensis HOM05D004292 ORTHO05D005206 1.3e-21 106.3 75 77.3
CARHR023490 Cardamine hirsuta HOM05D004292 ORTHO05D005206 1.7e-21 105.9 75 74.7
Dinv07664 Davidia involucrata HOM05D004292 ORTHO05D005206 1.7e-21 105.9 75 74.7
Thhalv10008584m.g Eutrema salsugineum HOM05D004292 ORTHO05D005206 1.7e-21 105.9 75 74.7
Lsat_1_v5_gn_8_44580 Lactuca sativa HOM05D004292 ORTHO05D005206 1.7e-21 105.9 75 77.3
Nitab4.5_0004230g0010 Nicotiana tabacum HOM05D004292 ORTHO05D005206 1.7e-21 105.9 75 74.7
Sopen04g002820 Solanum pennellii HOM05D004292 ORTHO05D005206 1.7e-21 105.9 75 74.7
PGSC0003DMG401005954 Solanum tuberosum HOM05D004292 ORTHO05D005206 1.7e-21 105.9 75 74.7
Thecc.02G283600 Theobroma cacao HOM05D004292 ORTHO05D005206 1.7e-21 105.9 75 74.7
HPP92_009641 Vanilla planifolia HOM05D004292 ORTHO05D005206 1.7e-21 105.9 75 73.3
Actinidia12367 Actinidia chinensis HOM05D004292 ORTHO05D005206 2.2e-21 105.5 75 76.0
BcaB03g14168 Brassica carinata HOM05D004292 ORTHO05D005206 2.2e-21 105.5 75 76.0
CAN.G150.4 Capsicum annuum HOM05D004292 ORTHO05D005206 2.2e-21 105.5 75 74.7
Gohir.A05G309400 Gossypium hirsutum HOM05D004292 ORTHO05D005206 2.2e-21 105.5 75 73.3
Gohir.D05G310300 Gossypium hirsutum HOM05D004292 ORTHO05D005206 2.2e-21 105.5 75 73.3
Nitab4.5_0000426g0230 Nicotiana tabacum HOM05D004292 ORTHO05D005206 2.2e-21 105.5 75 74.7
Solyc04g007730.3 Solanum lycopersicum HOM05D004292 ORTHO05D005206 2.2e-21 105.5 75 74.7
TWI75G1503 Tripterygium wilfordii HOM05D004292 ORTHO05D005206 2.2e-21 105.5 75 74.7
Cpa.g.c36802 Carica papaya HOM05D004292 ORTHO05D005206 2.9e-21 105.1 82 68.3
Ciclev10016392m.g Citrus clementina HOM05D004292 ORTHO05D005206 2.9e-21 105.1 75 74.7
Thhalv10019522m.g Eutrema salsugineum HOM05D004292 ORTHO05D005206 2.9e-21 105.1 75 76.0
Gohir.D01G144600 Gossypium hirsutum HOM05D004292 ORTHO05D005206 2.9e-21 105.1 75 74.7
Gorai.002G178500 Gossypium raimondii HOM05D004292 ORTHO05D005206 2.9e-21 105.1 75 74.7
Lj2g0018897 Lotus japonicus HOM05D004292 ORTHO05D005206 2.9e-21 105.1 75 73.3
Nn3g18267 Nelumbo nucifera HOM05D004292 ORTHO05D005206 2.9e-21 105.1 75 74.7
Peaxi162Scf00159g01025 Petunia axillaris HOM05D004292 ORTHO05D005206 2.9e-21 105.1 75 74.7
Duzib248G1431 Durio zibethinus HOM05D004292 ORTHO05D005206 3.8e-21 104.8 75 73.3
Potri.010G111300 Populus trichocarpa HOM05D004292 ORTHO05D005206 3.8e-21 104.8 75 76.0
Rhsim09G0096100 Rhododendron simsii HOM05D004292 ORTHO05D005206 3.8e-21 104.8 76 73.7
SalBow8G2030 Salvia bowleyana HOM05D004292 ORTHO05D005206 3.8e-21 104.8 75 74.7
SalBow8G2865 Salvia bowleyana HOM05D004292 ORTHO05D005206 3.8e-21 104.8 75 74.7
THA.LOC104809176 Tarenaya hassleriana HOM05D004292 ORTHO05D005206 3.8e-21 104.8 75 74.7
MBI12_g36036_MAGBIO Magnolia biondii HOM05D004292 ORTHO05D005206 5.0e-21 104.4 89 66.3
Rhsim09G0095100 Rhododendron simsii HOM05D004292 ORTHO05D005206 5.0e-21 104.4 69 78.3
TPR.G36967 Trifolium pratense HOM05D004292 ORTHO05D005206 5.0e-21 104.4 75 73.3
VMungo1215G3121 Vigna mungo HOM05D004292 ORTHO05D005206 5.0e-21 104.4 75 70.7
DCAR_030229 Daucus carota HOM05D004292 ORTHO05D005206 6.5e-21 104.0 69 79.7
Medtr1g031620 Medicago truncatula HOM05D004292 ORTHO05D005206 6.5e-21 104.0 75 73.3
BcaB03g14853 Brassica carinata HOM05D004292 ORTHO05D005206 8.5e-21 103.6 75 74.7
Migut.E00438 Erythranthe guttata HOM05D004292 ORTHO05D005206 8.5e-21 103.6 75 72.0
Sp5g26070 Schrenkiella parvula HOM05D004292 ORTHO05D005206 8.5e-21 103.6 75 74.7
ATR0564G234 Amborella trichopoda HOM05D004292 ORTHO05D005206 1.1e-20 103.2 75 73.3
A07p37330 Brassica napus HOM05D004292 ORTHO05D005206 1.1e-20 103.2 75 74.7
C06p45000 Brassica napus HOM05D004292 ORTHO05D005206 1.1e-20 103.2 75 74.7
BolC6t39558H Brassica oleracea HOM05D004292 ORTHO05D005206 1.1e-20 103.2 75 74.7
BraA07t31292Z Brassica rapa HOM05D004292 ORTHO05D005206 1.1e-20 103.2 75 74.7
Ca_12581_v3 Cicer arietinum L. HOM05D004292 ORTHO05D005206 1.1e-20 103.2 75 70.7
Ca_12594_v3 Cicer arietinum L. HOM05D004292 ORTHO05D005206 1.1e-20 103.2 75 70.7
Gorai.009G330900 Gossypium raimondii HOM05D004292 ORTHO05D005206 1.1e-20 103.2 75 72.0
Lalb_Chr17g0338501 Lupinus albus HOM05D004292 ORTHO05D005206 1.1e-20 103.2 75 72.0
Phvul.003G031700 Phaseolus vulgaris HOM05D004292 ORTHO05D005206 1.1e-20 103.2 75 69.3
Carub.0002s1769 Capsella rubella HOM05D004292 ORTHO05D005206 1.5e-20 102.8 75 73.3
DCAR_023592 Daucus carota HOM05D004292 ORTHO05D005206 1.5e-20 102.8 75 74.7
Eucgr.G02180 Eucalyptus grandis HOM05D004292 ORTHO05D005206 1.5e-20 102.8 75 70.7
HanXRQChr08g0212101 Helianthus annuus HOM05D004292 ORTHO05D005206 1.5e-20 102.8 75 73.3
Manes.15G129300 Manihot esculenta HOM05D004292 ORTHO05D005206 1.5e-20 102.8 75 72.0
Manes.17G078500 Manihot esculenta HOM05D004292 ORTHO05D005206 1.5e-20 102.8 75 73.3
Psat6g043600 Pisum sativum HOM05D004292 ORTHO05D005206 1.5e-20 102.8 75 70.7
QL01p001285 Quercus lobata HOM05D004292 ORTHO05D005206 1.5e-20 102.8 76 71.1
vmacro10650 Vaccinium macrocarpon HOM05D004292 ORTHO05D005206 1.5e-20 102.8 75 74.7
vmacro10653 Vaccinium macrocarpon HOM05D004292 ORTHO05D005206 1.5e-20 102.8 75 74.7
AL2G30410 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 1.9e-20 102.4 75 73.3
HanXRQChr12g0364371 Helianthus annuus HOM05D004292 ORTHO05D005206 1.9e-20 102.4 75 73.3
Nn4g24213 Nelumbo nucifera HOM05D004292 ORTHO05D005206 1.9e-20 102.4 75 73.3
Aa31LG4G10150 Aethionema arabicum HOM05D004292 ORTHO05D005206 2.5e-20 102.1 76 72.4
BcaC08g46539 Brassica carinata HOM05D004292 ORTHO05D005206 2.5e-20 102.1 75 73.3
ECA233G2687 Erigeron canadensis HOM05D004292 ORTHO05D005206 2.5e-20 102.1 75 73.3
Gohir.A01G151400 Gossypium hirsutum HOM05D004292 ORTHO05D005206 2.5e-20 102.1 74 73.0
Ah.03g137320 Amaranthus hybridus HOM05D004292 ORTHO05D001279 4.2e-20 101.3 75 72.0
Glyma.19G064200 Glycine max HOM05D004292 ORTHO05D005206 5.5e-20 100.9 75 68.0
Potri.008G130700 Populus trichocarpa HOM05D004292 ORTHO05D005206 5.5e-20 100.9 75 73.3
AT1G70900 Arabidopsis thaliana HOM05D004292 ORTHO05D005206 7.2e-20 100.5 75 70.7
CANSAT64G1906 Cannabis sativa HOM05D004292 ORTHO05D005206 7.2e-20 100.5 75 72.0
CDE05G3602 Ceratophyllum demersum HOM05D004292 ORTHO05D005206 7.2e-20 100.5 75 70.7
arahy.Tifrunner.gnm1.ann1.A6Q8V1 Arachis hypogaea HOM05D004292 ORTHO05D005206 1.2e-19 99.8 75 69.3
arahy.Tifrunner.gnm1.ann1.EY5UDZ Arachis hypogaea HOM05D004292 ORTHO05D005206 1.2e-19 99.8 75 69.3
CiPaw.06G047000 Carya illinoinensis HOM05D004292 ORTHO05D005206 1.2e-19 99.8 76 67.1
CARHR064180 Cardamine hirsuta HOM05D004292 ORTHO05D005206 1.6e-19 99.4 75 69.3
SalBow2G3034 Salvia bowleyana HOM05D004292 ORTHO05D005206 1.6e-19 99.4 75 69.3
Cfa008626 Carpinus fangiana HOM05D004292 ORTHO05D005206 2.1e-19 99.0 76 68.4
MBI19_g22783_MAGBIO Magnolia biondii HOM05D004292 ORTHO05D005206 2.1e-19 99.0 74 73.0
Os08g0433200 Oryza sativa ssp. japonica HOM05D004292 ORTHO05D005206 2.1e-19 99.0 75 68.0
Haze_10980 Corylus avellana HOM05D004292 ORTHO05D005206 2.7e-19 98.6 76 68.4
Sed0011413 Sechium edule HOM05D004292 ORTHO05D005206 2.7e-19 98.6 76 68.4
MELO3C005303.2 Cucumis melo HOM05D004292 ORTHO05D005206 6.1e-19 97.4 76 67.1
CsaV3_5G028400 Cucumis sativus L. HOM05D004292 ORTHO05D005206 6.1e-19 97.4 76 67.1
Hund10268 Selenicereus undatus HOM05D004292 ORTHO05D005206 6.1e-19 97.4 75 68.0
AUR62014183 Chenopodium quinoa HOM05D004292 ORTHO05D005206 8.0e-19 97.1 75 68.0
Aa31LG7G7080 Aethionema arabicum HOM05D004292 ORTHO05D005206 1.0e-18 96.7 86 66.3
Sc04g0005360 Simmondsia chinensis HOM05D004292 ORTHO05D005206 1.4e-18 96.3 75 66.7
ClCG01G006270 Citrullus lanatus HOM05D004292 ORTHO05D005206 1.8e-18 95.9 76 65.8
Zm00001eb099420 Zea mays HOM05D004292 ORTHO05D005206 4.0e-18 94.7 69 69.6
Zm00001eb041560 Zea mays HOM05D004292 ORTHO05D005206 2.0e-17 92.4 80 65.0
CSS0022047 Camellia sinensis var. sinensis HOM05D004292 ORTHO05D005206 4.4e-17 91.3 79 65.8
CDE05G3401 Ceratophyllum demersum HOM05D001044 ORTHO05D004551 2.0e-14 82.4 57 75.4
C06p45020 Brassica napus HOM05D004292 ORTHO05D005206 3.8e-13 78.2 82 57.3
BolC6t39560H Brassica oleracea HOM05D004292 ORTHO05D005206 3.8e-13 78.2 82 57.3
Pp3c24_11420 Physcomitrium patens HOM05D004292 ORTHO05D005206 1.1e-12 76.6 76 56.6
Pp3c7_7180 Physcomitrium patens HOM05D004292 ORTHO05D005206 1.9e-12 75.9 76 53.9
Mapoly0185s0002 Marchantia polymorpha HOM05D004292 ORTHO05D005206 1.2e-11 73.2 74 50.0
AagrBONN_evm.TU.Sc2ySwM_368.1350 Anthoceros agrestis HOM05D004292 ORTHO05D005206 2.1e-11 72.4 69 53.6
unitig_699.g19535 Utricularia gibba HOM05D004292 ORTHO05D005206 2.3e-10 68.9 80 53.8
SMO111G0032 Selaginella moellendorffii HOM05D004292 ORTHO05D005206 6.8e-10 67.4 75 53.3
GSVIVG01038114001 Vitis vinifera HOM05D000242 ORTHO05D000631 5.4e-07 57.8 36 77.8
MD06G1224600 Malus domestica HOM05D004292 ORTHO05D005206 7.8e-06 53.9 36 72.2


User provided reference genes

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