Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g18400 Coffea canephora HOM05D005237 ORTHO05D006189 1.1e-95 353.2 173 100.0
Nitab4.5_0002267g0030 Nicotiana tabacum HOM05D005237 ORTHO05D006189 3.6e-86 321.6 175 90.3
CiPaw.03G250600 Carya illinoinensis HOM05D005237 ORTHO05D006189 4.0e-85 318.2 175 89.7
Duzib150G0783 Durio zibethinus HOM05D005237 ORTHO05D006189 5.2e-85 317.8 175 90.3
QL02p090325 Quercus lobata HOM05D005237 ORTHO05D006189 5.2e-85 317.8 174 90.2
Peaxi162Scf00088g00918 Petunia axillaris HOM05D005237 ORTHO05D006189 1.5e-84 316.2 174 89.7
vmacro07739 Vaccinium macrocarpon HOM05D005237 ORTHO05D006189 2.0e-84 315.8 174 89.7
Actinidia07336 Actinidia chinensis HOM05D005237 ORTHO05D006189 2.6e-84 315.5 175 89.7
GSVIVG01012837001 Vitis vinifera HOM05D005237 ORTHO05D006189 2.6e-84 315.5 175 89.7
Rhsim01G0059600 Rhododendron simsii HOM05D005237 ORTHO05D006189 3.4e-84 315.1 175 89.1
Glyma.17G108800 Glycine max HOM05D005237 ORTHO05D006189 5.8e-84 314.3 175 88.0
Medtr4g115900 Medicago truncatula HOM05D005237 ORTHO05D006189 7.6e-84 313.9 171 90.1
unitig_748.g7174 Utricularia gibba HOM05D005237 ORTHO05D006189 7.6e-84 313.9 174 87.9
Cpa.g.sc277.15 Carica papaya HOM05D005237 ORTHO05D006189 9.9e-84 313.5 175 88.6
Ciclev10009685m.g Citrus clementina HOM05D005237 ORTHO05D006189 1.3e-83 313.2 175 89.1
Dinv41456 Davidia involucrata HOM05D005237 ORTHO05D006189 1.3e-83 313.2 175 88.0
Haze_25466 Corylus avellana HOM05D005237 ORTHO05D006189 2.2e-83 312.4 175 88.6
Haze_25470 Corylus avellana HOM05D005237 ORTHO05D006189 2.2e-83 312.4 175 88.6
Lj7A437T44 Lonicera japonica HOM05D005237 ORTHO05D006189 2.2e-83 312.4 173 89.0
MD02G1020300 Malus domestica HOM05D005237 ORTHO05D006189 2.2e-83 312.4 174 88.5
Oeu000523.1 Olea europaea HOM05D005237 ORTHO05D006189 2.2e-83 312.4 175 86.9
Eucgr.C04376 Eucalyptus grandis HOM05D005237 ORTHO05D006189 2.9e-83 312.0 175 87.4
SGA_v2.0_scaffold37G14721 Striga asiatica HOM05D005237 ORTHO05D006189 3.8e-83 311.6 175 88.0
Migut.K00410 Erythranthe guttata HOM05D005237 ORTHO05D006189 4.9e-83 311.2 171 88.3
Glyma.13G162500 Glycine max HOM05D005237 ORTHO05D006189 4.9e-83 311.2 175 87.4
Lalb_Chr13g0301391 Lupinus albus HOM05D005237 ORTHO05D006189 6.4e-83 310.8 175 86.9
Psat0s3428g0040 Pisum sativum HOM05D005237 ORTHO05D006189 6.4e-83 310.8 171 87.7
PGSC0003DMG400030712 Solanum tuberosum HOM05D005237 ORTHO05D006189 8.4e-83 310.5 175 86.9
Potri.018G123100 Populus trichocarpa HOM05D005237 ORTHO05D006189 1.1e-82 310.1 171 88.3
PGR102G2022 Punica granatum HOM05D005237 ORTHO05D006189 1.1e-82 310.1 171 88.9
Gohir.A08G089300 Gossypium hirsutum HOM05D005237 ORTHO05D006189 1.4e-82 309.7 175 87.4
CsaV3_2G003270 Cucumis sativus L. HOM05D005237 ORTHO05D006189 2.4e-82 308.9 175 86.9
DCAR_009333 Daucus carota HOM05D005237 ORTHO05D006189 2.4e-82 308.9 170 87.6
Nitab4.5_0000704g0070 Nicotiana tabacum HOM05D005237 ORTHO05D006189 2.4e-82 308.9 190 82.1
Phvul.003G171200 Phaseolus vulgaris HOM05D005237 ORTHO05D006189 2.4e-82 308.9 175 86.3
Sabra18G0104800 Salix brachista HOM05D005237 ORTHO05D006189 2.4e-82 308.9 171 87.7
Hma1.2p1_0343F.1_g130850 Hydrangea macrophylla HOM05D005237 ORTHO05D006189 3.2e-82 308.5 173 87.3
Lj4g0017742 Lotus japonicus HOM05D005237 ORTHO05D006189 3.2e-82 308.5 175 87.4
ClCG11G003410 Citrullus lanatus HOM05D005237 ORTHO05D006189 4.2e-82 308.1 175 86.9
Gorai.004G108300 Gossypium raimondii HOM05D005237 ORTHO05D006189 4.2e-82 308.1 174 87.9
Lalb_Chr12g0198311 Lupinus albus HOM05D005237 ORTHO05D006189 5.4e-82 307.8 175 85.1
Atru.chr7.1980 Acer truncatum HOM05D005237 ORTHO05D006189 7.1e-82 307.4 174 87.9
Carub.0002s0491 Capsella rubella HOM05D005237 ORTHO05D006189 7.1e-82 307.4 171 87.1
MD15G1163100 Malus domestica HOM05D005237 ORTHO05D006189 7.1e-82 307.4 174 86.8
Prupe.7G251500 Prunus persica HOM05D005237 ORTHO05D006189 7.1e-82 307.4 174 86.8
Ah.09g224420 Amaranthus hybridus HOM05D005237 ORTHO05D006189 9.3e-82 307.0 171 86.5
AT1G60430 Arabidopsis thaliana HOM05D005237 ORTHO05D006189 9.3e-82 307.0 171 86.5
CARHR052620 Cardamine hirsuta HOM05D005237 ORTHO05D006189 1.2e-81 306.6 171 86.5
SalBow1G1295 Salvia bowleyana HOM05D005237 ORTHO05D006189 1.2e-81 306.6 175 86.3
Solyc07g007630.3 Solanum lycopersicum HOM05D005237 ORTHO05D006189 1.2e-81 306.6 175 85.7
Sopen07g003620 Solanum pennellii HOM05D005237 ORTHO05D006189 1.6e-81 306.2 175 85.1
Aa31LG2G10030 Aethionema arabicum HOM05D005237 ORTHO05D006189 2.1e-81 305.8 171 86.5
CANSAT11G1632 Cannabis sativa HOM05D005237 ORTHO05D006189 2.1e-81 305.8 175 85.1
Manes.14G117900 Manihot esculenta HOM05D005237 ORTHO05D006189 2.1e-81 305.8 171 87.1
THA.LOC104815299 Tarenaya hassleriana HOM05D005237 ORTHO05D006189 2.1e-81 305.8 170 85.9
TWI32G1192 Tripterygium wilfordii HOM05D005237 ORTHO05D006189 2.1e-81 305.8 175 85.7
MSTRG.26338 Avicennia marina HOM05D005237 ORTHO05D006189 2.7e-81 305.4 175 86.3
FvH4_3g33280 Fragaria vesca HOM05D005237 ORTHO05D006189 4.6e-81 304.7 174 86.8
FAN11G2421 Fragaria x ananassa HOM05D005237 ORTHO05D006189 4.6e-81 304.7 174 86.8
EL10Ac8g18779 Beta vulgaris HOM05D005237 ORTHO05D006189 7.8e-81 303.9 171 85.4
arahy.Tifrunner.gnm1.ann1.E2H6AC Arachis hypogaea HOM05D005237 ORTHO05D006189 1.0e-80 303.5 175 85.7
Hund09300 Selenicereus undatus HOM05D005237 ORTHO05D006189 1.0e-80 303.5 171 86.0
Nn8g40617 Nelumbo nucifera HOM05D005237 ORTHO05D006189 1.3e-80 303.1 171 85.4
Sp2g04330 Schrenkiella parvula HOM05D005237 ORTHO05D006189 1.7e-80 302.8 170 85.9
HPP92_021894 Vanilla planifolia HOM05D005237 ORTHO05D006189 1.7e-80 302.8 171 86.5
Thhalv10023668m.g Eutrema salsugineum HOM05D005237 ORTHO05D006189 2.3e-80 302.4 170 85.9
Sed0005481 Sechium edule HOM05D005237 ORTHO05D006189 2.3e-80 302.4 175 85.7
FAN21G0596 Fragaria x ananassa HOM05D005237 ORTHO05D006189 3.0e-80 302.0 174 86.2
AL2G16270 Arabidopsis lyrata HOM05D005237 ORTHO05D006189 3.9e-80 301.6 171 85.4
BcaB07g31213 Brassica carinata HOM05D005237 ORTHO05D006189 5.1e-80 301.2 171 84.8
BcaC04g22225 Brassica carinata HOM05D005237 ORTHO05D006189 5.1e-80 301.2 171 84.8
HanXRQChr06g0180531 Helianthus annuus HOM05D005237 ORTHO05D006189 5.1e-80 301.2 170 85.3
SEGI_28631 Sequoiadendron giganteum HOM05D005237 ORTHO05D006189 8.7e-80 300.4 170 85.3
ECA236G1442 Erigeron canadensis HOM05D005237 ORTHO05D006189 1.1e-79 300.1 170 85.9
Sc18g0000220 Simmondsia chinensis HOM05D005237 ORTHO05D006189 1.1e-79 300.1 171 84.8
CiPaw.04G176700 Carya illinoinensis HOM05D005237 ORTHO05D006189 1.5e-79 299.7 175 85.1
RcHm_v2.0_Chr5g0060671 Rosa chinensis HOM05D005237 ORTHO05D006189 1.5e-79 299.7 174 85.6
Sed0006539 Sechium edule HOM05D005237 ORTHO05D006189 1.5e-79 299.7 175 84.0
C09p21860 Brassica napus HOM05D002152 ORTHO05D006189 2.5e-79 298.9 170 84.7
BraA09t37380Z Brassica rapa HOM05D002152 ORTHO05D006189 2.5e-79 298.9 170 84.7
Potri.006G063400 Populus trichocarpa HOM05D005237 ORTHO05D006189 2.5e-79 298.9 171 86.0
Aqoxy7G00028 Aquilegia oxysepala HOM05D005237 ORTHO05D006189 3.3e-79 298.5 175 84.0
Lsat_1_v5_gn_8_61340 Lactuca sativa HOM05D005237 ORTHO05D006189 3.3e-79 298.5 170 84.1
CDE07G1573 Ceratophyllum demersum HOM05D005237 ORTHO05D006189 4.3e-79 298.1 174 82.8
Zm00001eb238940 Zea mays HOM05D005237 ORTHO05D006189 4.3e-79 298.1 171 84.8
A09p17560 Brassica napus HOM05D002152 ORTHO05D006189 5.6e-79 297.7 170 84.1
Zm00001eb238960 Zea mays HOM05D005237 ORTHO05D006189 5.6e-79 297.7 170 85.3
Zm00001eb238970 Zea mays HOM05D005237 ORTHO05D006189 5.6e-79 297.7 170 85.3
Zm00001eb438640 Zea mays HOM05D005237 ORTHO05D006189 5.6e-79 297.7 170 85.3
Zm00001eb438650 Zea mays HOM05D005237 ORTHO05D006189 5.6e-79 297.7 170 85.3
Zm00001eb150940 Zea mays HOM05D005237 ORTHO05D006189 8.1e-78 293.9 170 84.7
CSS0004544 Camellia sinensis var. sinensis HOM05D005237 ORTHO05D006189 2.0e-76 289.3 226 68.1
Dinv36460 Davidia involucrata HOM05D005237 ORTHO05D006189 9.9e-76 287.0 159 89.9
MBI14_g10734_MAGBIO Magnolia biondii HOM05D005237 ORTHO05D006189 9.9e-76 287.0 181 80.7
Gohir.D05G014800 Gossypium hirsutum HOM05D005237 ORTHO05D006189 3.8e-75 285.0 172 79.7
Gohir.A05G013700 Gossypium hirsutum HOM05D005237 ORTHO05D006189 8.4e-75 283.9 172 79.1
Gorai.009G014900 Gossypium raimondii HOM05D005237 ORTHO05D006189 4.2e-74 281.6 174 78.2
Gohir.D08G100500 Gossypium hirsutum HOM05D005237 ORTHO05D006189 9.3e-74 280.4 158 88.6
SHI03217 Sapria himalayana HOM05D005237 ORTHO05D006189 1.2e-73 280.0 165 81.8
ATR0580G166 Amborella trichopoda HOM05D005237 ORTHO05D006189 1.3e-67 260.0 149 87.2
CDE04G0420 Ceratophyllum demersum HOM05D005237 ORTHO05D006189 3.8e-67 258.5 151 83.4
Pp3c3_23320 Physcomitrium patens HOM05D005237 ORTHO05D006189 3.8e-67 258.5 174 67.8
Pp3c10_12220 Physcomitrium patens HOM05D005237 ORTHO05D006189 6.4e-67 257.7 174 67.8
Mapoly0002s0013 Marchantia polymorpha HOM05D005237 ORTHO05D006189 2.4e-66 255.8 176 69.3
SMO356G0108 Selaginella moellendorffii HOM05D005237 ORTHO05D006189 4.6e-65 251.5 174 68.4
BolC9t55091H Brassica oleracea HOM05D002152 ORTHO05D002737 1.3e-64 250.0 146 84.2
MELO3C004473.2 Cucumis melo HOM05D005237 ORTHO05D006189 3.0e-64 248.8 139 87.8
PSO675G7544 Papaver somniferum HOM05D005237 ORTHO05D006189 2.0e-60 236.1 135 85.2
Zm00001eb238980 Zea mays HOM05D005237 ORTHO05D006189 1.0e-59 233.8 131 86.3
Thecc.09G135400 Theobroma cacao HOM05D005237 ORTHO05D006189 3.8e-59 231.9 168 70.8
VMungo1215G1009 Vigna mungo HOM05D005237 ORTHO05D006189 1.9e-58 229.6 136 83.1
CAN.G1382.4 Capsicum annuum HOM05D005237 ORTHO05D006189 3.2e-58 228.8 127 87.4
COL.COLO4_15552 Corchorus olitorius HOM05D005237 ORTHO05D006189 4.2e-58 228.4 126 88.9
AUR62011203 Chenopodium quinoa HOM05D005237 ORTHO05D006189 7.9e-57 224.2 130 85.4
AUR62013284 Chenopodium quinoa HOM05D005237 ORTHO05D006189 7.9e-57 224.2 130 85.4
Lsat_1_v5_gn_7_44340 Lactuca sativa HOM05D005237 ORTHO05D006189 7.9e-57 224.2 176 62.5
TAR626G0602 Trochodendron aralioides HOM05D005237 ORTHO05D006189 1.3e-56 223.4 134 84.3
TPR.G39824 Trifolium pratense HOM05D005237 ORTHO05D006189 2.3e-56 222.6 127 85.0
Duzib187G1805 Durio zibethinus HOM05D005237 ORTHO05D006189 6.7e-56 221.1 130 84.6
Os02g0235000 Oryza sativa ssp. japonica HOM05D005237 ORTHO05D006189 1.9e-55 219.5 127 84.3
TWI38G2392 Tripterygium wilfordii HOM05D005237 ORTHO05D006189 4.8e-54 214.9 128 82.8
MD10G1159100 Malus domestica HOM05D005237 ORTHO05D006189 3.1e-53 212.2 129 82.2
FAN25G0883 Fragaria x ananassa HOM05D005237 ORTHO05D006189 5.8e-52 208.0 163 68.1
VMungo0251G3112 Vigna mungo HOM05D005237 ORTHO05D006189 5.5e-50 201.4 145 72.4
Sopen02g003910 Solanum pennellii HOM05D005237 ORTHO05D006189 9.3e-50 200.7 132 74.2
Peaxi162Scf00113g00061 Petunia axillaris HOM05D005237 ORTHO05D006189 3.0e-48 195.7 128 76.6
Solyc02g014540.3 Solanum lycopersicum HOM05D005237 ORTHO05D006189 8.2e-46 187.6 130 70.8
Ca_21648_v3 Cicer arietinum L. HOM05D005237 ORTHO05D006189 1.9e-42 176.4 129 72.1
FAN16G0279 Fragaria x ananassa HOM05D005237 ORTHO05D006189 5.7e-39 164.9 93 86.0
Sabra06G0046100 Salix brachista HOM05D005237 ORTHO05D006189 1.1e-37 160.6 94 85.1
FAN21G3302 Fragaria x ananassa HOM05D005237 ORTHO05D006189 4.1e-37 158.7 92 84.8
FAN17G0595 Fragaria x ananassa HOM05D005237 ORTHO05D006189 1.0e-35 154.1 105 74.3
PGSC0003DMG400003270 Solanum tuberosum HOM05D005237 ORTHO05D006189 1.7e-35 153.3 89 80.9
FAN28G2985 Fragaria x ananassa HOM05D005237 ORTHO05D006189 2.2e-35 152.9 93 81.7
FAN17G0540 Fragaria x ananassa HOM05D005237 ORTHO05D006189 3.8e-35 152.1 128 66.4
FAN02G0796 Fragaria x ananassa HOM05D005237 ORTHO05D006189 2.5e-34 149.4 103 72.8
FAN20G0460 Fragaria x ananassa HOM05D005237 ORTHO05D006189 9.4e-34 147.5 90 80.0
Duzib168G1377 Durio zibethinus HOM05D005237 ORTHO05D006189 7.4e-31 137.9 75 89.3
Eucgr.I02126 Eucalyptus grandis HOM05D005237 ORTHO05D006189 1.1e-29 134.0 80 81.2
Medtr0320s0040 Medicago truncatula HOM05D005237 ORTHO05D006189 7.7e-28 127.9 88 73.9
FAN20G1904 Fragaria x ananassa HOM05D005237 ORTHO05D006189 1.0e-27 127.5 77 83.1
Cre09.g397950 Chlamydomonas reinhardtii HOM05D005237 ORTHO05D006189 8.5e-27 124.4 190 37.4
Aa31LG9G5450 Aethionema arabicum HOM05D005237 ORTHO05D006189 5.5e-26 121.7 97 63.9
Eucgr.L01822 Eucalyptus grandis HOM05D005237 ORTHO05D006189 2.7e-25 119.4 78 74.4
Zm00001eb302220 Zea mays HOM05D005237 ORTHO05D006189 9.7e-23 110.9 67 79.1
TAR625G1190 Trochodendron aralioides HOM05D005237 ORTHO05D006189 9.4e-18 94.4 90 56.7
Cc06_g07800 Coffea canephora HOM05D005237 ORTHO05D006189 1.0e-16 90.9 57 78.9
Lsat_1_v5_gn_2_45981 Lactuca sativa HOM05D005237 ORTHO05D003224 1.5e-10 70.5 46 65.2


User provided reference genes

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