Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g18320 Coffea canephora HOM05D004356 ORTHO05D005542 1.2e-208 729.6 353 100.0
Cc10_g15470 Coffea canephora HOM05D004356 ORTHO05D005542 3.2e-198 694.9 351 95.4
Cc10_g15440 Coffea canephora HOM05D004356 ORTHO05D005542 6.1e-197 690.6 353 94.6
Dinv42649 Davidia involucrata HOM05D004356 ORTHO05D005542 7.2e-174 614.0 349 82.5
Actinidia33114 Actinidia chinensis HOM05D004356 ORTHO05D005542 6.8e-172 607.4 348 82.8
Solyc01g081300.4 Solanum lycopersicum HOM05D004356 ORTHO05D005542 7.5e-171 604.0 349 79.9
CSS0046210 Camellia sinensis var. sinensis HOM05D004356 ORTHO05D005542 6.3e-170 600.9 349 81.4
Sopen01g032880 Solanum pennellii HOM05D004356 ORTHO05D005542 5.4e-169 597.8 349 79.4
PGSC0003DMG400001802 Solanum tuberosum HOM05D004356 ORTHO05D005542 9.1e-169 597.0 349 79.4
TAR381G1323 Trochodendron aralioides HOM05D004356 ORTHO05D005542 1.6e-168 596.3 348 79.9
GSVIVG01009120001 Vitis vinifera HOM05D004356 ORTHO05D005542 2.0e-168 595.9 350 79.7
Nitab4.5_0004523g0040 Nicotiana tabacum HOM05D004356 ORTHO05D005542 5.9e-168 594.3 349 78.5
ECA247G0627 Erigeron canadensis HOM05D004356 ORTHO05D005542 1.3e-167 593.2 340 79.7
Nitab4.5_0001788g0020 Nicotiana tabacum HOM05D004356 ORTHO05D005542 1.3e-167 593.2 349 78.8
QL09p016893 Quercus lobata HOM05D004356 ORTHO05D005542 1.1e-166 590.1 351 78.3
Migut.M02007 Erythranthe guttata HOM05D004356 ORTHO05D005542 1.9e-166 589.3 349 79.1
Oeu025262.1 Olea europaea HOM05D004356 ORTHO05D005542 2.5e-166 589.0 351 79.2
SalBow8G3481 Salvia bowleyana HOM05D004356 ORTHO05D005542 1.2e-165 586.6 342 79.2
vmacro04684 Vaccinium macrocarpon HOM05D004356 ORTHO05D005542 1.2e-165 586.6 376 75.5
CANSAT21G1617 Cannabis sativa HOM05D004356 ORTHO05D005542 3.6e-165 585.1 351 77.2
Lsat_1_v5_gn_1_2520 Lactuca sativa HOM05D004356 ORTHO05D005542 4.7e-165 584.7 351 77.2
SGA_v2.0_scaffold175G39331 Striga asiatica HOM05D004356 ORTHO05D005542 6.1e-165 584.3 342 78.9
MD15G1379800 Malus domestica HOM05D004356 ORTHO05D005542 1.0e-164 583.6 349 77.1
CAN.G992.8 Capsicum annuum HOM05D004356 ORTHO05D005542 3.0e-164 582.0 349 77.1
Rhsim07G0209000 Rhododendron simsii HOM05D004356 ORTHO05D005542 6.8e-164 580.9 374 74.9
RcHm_v2.0_Chr1g0327751 Rosa chinensis HOM05D004356 ORTHO05D005542 8.8e-164 580.5 349 77.1
CSS0005507 Camellia sinensis var. sinensis HOM05D004356 ORTHO05D005542 2.0e-163 579.3 349 79.1
MD00G1136500 Malus domestica HOM05D004356 ORTHO05D005542 2.6e-163 578.9 351 76.6
HanXRQChr02g0040341 Helianthus annuus HOM05D004356 ORTHO05D005542 3.4e-163 578.6 346 76.0
MSTRG.16368 Avicennia marina HOM05D004356 ORTHO05D005542 7.5e-163 577.4 354 76.0
Ca_19032_v3 Cicer arietinum L. HOM05D004356 ORTHO05D005542 9.8e-163 577.0 344 78.5
Duzib093G1902 Durio zibethinus HOM05D004356 ORTHO05D005542 1.3e-162 576.6 350 76.9
FvH4_5g36000 Fragaria vesca HOM05D004356 ORTHO05D005542 1.7e-162 576.2 349 76.5
FAN18G3440 Fragaria x ananassa HOM05D004356 ORTHO05D005542 2.8e-162 575.5 349 76.5
MELO3C011060.2 Cucumis melo HOM05D004356 ORTHO05D005542 3.7e-162 575.1 340 77.9
CsaV3_2G030020 Cucumis sativus L. HOM05D004356 ORTHO05D005542 4.9e-162 574.7 340 77.9
Peaxi162Scf00592g00454 Petunia axillaris HOM05D004356 ORTHO05D005542 8.3e-162 573.9 377 70.8
COL.COLO4_11966 Corchorus olitorius HOM05D004356 ORTHO05D005542 2.4e-161 572.4 350 75.4
FAN04G0906 Fragaria x ananassa HOM05D004356 ORTHO05D005542 2.4e-161 572.4 349 75.6
Aqoxy3G00172 Aquilegia oxysepala HOM05D004356 ORTHO05D005542 5.4e-161 571.2 351 74.9
TPR.G16206 Trifolium pratense HOM05D004356 ORTHO05D005542 5.4e-161 571.2 348 76.7
Sed0016629 Sechium edule HOM05D004356 ORTHO05D005542 9.2e-161 570.5 340 77.4
Phvul.008G178500 Phaseolus vulgaris HOM05D004356 ORTHO05D005542 1.2e-160 570.1 349 77.7
RcHm_v2.0_Chr7g0237731 Rosa chinensis HOM05D004356 ORTHO05D005542 1.6e-160 569.7 346 76.0
Glyma.14G178900 Glycine max HOM05D004356 ORTHO05D005542 2.0e-160 569.3 350 76.6
Dinv44826 Davidia involucrata HOM05D004356 ORTHO05D005542 2.7e-160 568.9 315 83.2
PSO675G0521 Papaver somniferum HOM05D004356 ORTHO05D005542 2.7e-160 568.9 334 79.0
Hund16880 Selenicereus undatus HOM05D004356 ORTHO05D005542 3.5e-160 568.5 350 76.9
Aqoxy1G00182 Aquilegia oxysepala HOM05D004356 ORTHO05D005542 1.0e-159 567.0 350 75.7
VMungo0647G1889 Vigna mungo HOM05D004356 ORTHO05D005542 1.0e-159 567.0 339 78.2
TWI56G1415 Tripterygium wilfordii HOM05D004356 ORTHO05D005542 2.3e-159 565.8 352 76.1
Gohir.A05G222100 Gossypium hirsutum HOM05D004356 ORTHO05D005542 2.9e-159 565.5 341 76.2
Lj1g0019049 Lotus japonicus HOM05D004356 ORTHO05D005542 5.0e-159 564.7 352 76.7
Ciclev10001304m.g Citrus clementina HOM05D004356 ORTHO05D005542 8.6e-159 563.9 347 74.9
TPR.G30120 Trifolium pratense HOM05D004356 ORTHO05D005542 8.6e-159 563.9 347 76.4
PSO675G5075 Papaver somniferum HOM05D004356 ORTHO05D005542 1.1e-158 563.5 341 78.3
Gohir.D05G224800 Gossypium hirsutum HOM05D004356 ORTHO05D005542 1.5e-158 563.1 354 74.9
Gorai.009G232200 Gossypium raimondii HOM05D004356 ORTHO05D005542 1.9e-158 562.8 353 74.8
AUR62027839 Chenopodium quinoa HOM05D004356 ORTHO05D005542 2.5e-158 562.4 351 76.1
Atru.chr13.1064 Acer truncatum HOM05D004356 ORTHO05D005542 3.3e-158 562.0 350 74.6
Atru.chr13.1070 Acer truncatum HOM05D004356 ORTHO05D005542 3.3e-158 562.0 350 74.6
PSO017G1942 Papaver somniferum HOM05D004356 ORTHO05D005542 3.3e-158 562.0 335 77.9
Haze_22357 Corylus avellana HOM05D004356 ORTHO05D005542 4.3e-158 561.6 390 70.3
FAN08G0112 Fragaria x ananassa HOM05D004356 ORTHO05D005542 7.3e-158 560.8 376 71.0
ATR0022G038 Amborella trichopoda HOM05D004356 ORTHO05D005542 9.5e-158 560.5 336 76.5
Medtr5g065270 Medicago truncatula HOM05D004356 ORTHO05D005542 3.6e-157 558.5 351 75.8
Eucgr.F00397 Eucalyptus grandis HOM05D004356 ORTHO05D005542 6.1e-157 557.8 368 71.2
Psat2g068800 Pisum sativum HOM05D004356 ORTHO05D005542 6.1e-157 557.8 351 74.6
arahy.Tifrunner.gnm1.ann1.VLAW7V Arachis hypogaea HOM05D004356 ORTHO05D005542 8.0e-157 557.4 340 76.2
Glyma.02G211300 Glycine max HOM05D004356 ORTHO05D005542 1.4e-156 556.6 340 75.6
Manes.18G062300 Manihot esculenta HOM05D004356 ORTHO05D005542 1.8e-156 556.2 340 75.9
Lalb_Chr10g0102631 Lupinus albus HOM05D004356 ORTHO05D005542 4.0e-156 555.1 353 75.1
arahy.Tifrunner.gnm1.ann1.QY7301 Arachis hypogaea HOM05D004356 ORTHO05D005542 5.2e-156 554.7 348 75.0
Ah.05g170540 Amaranthus hybridus HOM05D004356 ORTHO05D005542 6.8e-156 554.3 340 76.2
PGR102G1623 Punica granatum HOM05D004356 ORTHO05D005542 6.8e-156 554.3 352 73.6
arahy.Tifrunner.gnm1.ann1.JC6ZCB Arachis hypogaea HOM05D004356 ORTHO05D005542 1.5e-155 553.1 351 73.8
CiPaw.16G056200 Carya illinoinensis HOM05D004356 ORTHO05D005542 1.5e-155 553.1 341 76.0
EL10Ac9g21432 Beta vulgaris HOM05D000128 ORTHO05D005542 9.8e-155 550.4 350 74.6
CDE04G0095 Ceratophyllum demersum HOM05D004356 ORTHO05D005542 1.3e-154 550.1 331 76.7
unitig_37.g12048 Utricularia gibba HOM05D004356 ORTHO05D005542 3.7e-154 548.5 352 71.9
A03p42020 Brassica napus HOM05D004356 ORTHO05D005542 6.4e-154 547.7 352 73.3
THA.LOC104816870 Tarenaya hassleriana HOM05D004356 ORTHO05D005542 1.1e-153 547.0 340 73.8
Thhalv10020825m.g Eutrema salsugineum HOM05D004356 ORTHO05D005542 3.2e-153 545.4 352 72.4
Lj1g0006758 Lotus japonicus HOM05D004356 ORTHO05D005542 9.2e-153 543.9 336 76.8
Zm00001eb284720 Zea mays HOM05D004356 ORTHO05D005542 1.2e-152 543.5 364 70.6
Duzib106G0787 Durio zibethinus HOM05D004356 ORTHO05D005542 1.6e-152 543.1 349 74.2
AT3G21110 Arabidopsis thaliana HOM05D004356 ORTHO05D005542 2.0e-152 542.7 349 72.2
BcaB04g19136 Brassica carinata HOM05D004356 ORTHO05D005542 2.0e-152 542.7 350 73.1
BraA03t13356Z Brassica rapa HOM05D004356 ORTHO05D005542 2.0e-152 542.7 357 72.8
BolC3t17429H Brassica oleracea HOM05D004356 ORTHO05D005542 2.7e-152 542.3 352 72.4
CARHR096940 Cardamine hirsuta HOM05D004356 ORTHO05D005542 3.5e-152 542.0 348 72.1
Os09g0467100 Oryza sativa ssp. japonica HOM05D004356 ORTHO05D005542 3.0e-151 538.9 330 75.2
AL3G35050 Arabidopsis lyrata HOM05D004356 ORTHO05D005542 5.0e-151 538.1 351 70.9
A01p33740 Brassica napus HOM05D004356 ORTHO05D005542 6.6e-151 537.7 346 72.3
Aa31LG8G7830 Aethionema arabicum HOM05D004356 ORTHO05D005542 2.5e-150 535.8 352 72.2
BraA01t03487Z Brassica rapa HOM05D004356 ORTHO05D005542 3.3e-150 535.4 350 72.3
Carub.0003s2101 Capsella rubella HOM05D004356 ORTHO05D005542 7.3e-150 534.3 349 71.3
Carub.0003s2106 Capsella rubella HOM05D004356 ORTHO05D005542 4.7e-149 531.6 344 71.5
HPP92_011797 Vanilla planifolia HOM05D004356 ORTHO05D005542 6.2e-149 531.2 340 72.1
Cfa013712 Carpinus fangiana HOM05D004356 ORTHO05D005542 4.0e-148 528.5 353 72.5
AUR62018997 Chenopodium quinoa HOM05D004356 ORTHO05D005542 4.4e-147 525.0 337 73.9
Thecc.08G065800 Theobroma cacao HOM05D004356 ORTHO05D005542 7.5e-147 524.2 296 81.4
Potri.017G051500 Populus trichocarpa HOM05D004356 ORTHO05D005542 1.3e-146 523.5 314 77.7
Mapoly0044s0034 Marchantia polymorpha HOM05D004356 ORTHO05D005542 1.9e-145 519.6 351 71.2
BcaB04g20611 Brassica carinata HOM05D004356 ORTHO05D005542 9.2e-145 517.3 346 70.5
BcaC01g03528 Brassica carinata HOM05D004356 ORTHO05D004900 1.6e-144 516.5 335 71.6
SEGI_03509 Sequoiadendron giganteum HOM05D004356 ORTHO05D005542 1.7e-143 513.1 338 71.0
Sabra17G0038400 Salix brachista HOM05D004356 ORTHO05D005542 3.9e-143 511.9 358 70.1
Sabra17G0043000 Salix brachista HOM05D004356 ORTHO05D005542 3.9e-143 511.9 358 70.1
Sabra17G0037700 Salix brachista HOM05D004356 ORTHO05D005542 3.3e-142 508.8 358 69.8
arahy.Tifrunner.gnm1.ann1.3Z7WCZ Arachis hypogaea HOM05D004356 ORTHO05D005542 1.4e-140 503.4 348 69.5
Prupe.1G526100 Prunus persica HOM05D004356 ORTHO05D005542 1.5e-139 500.0 283 78.4
C03p51440 Brassica napus HOM05D004356 ORTHO05D005542 2.0e-139 499.6 356 67.7
Sp3g19060 Schrenkiella parvula HOM05D004356 ORTHO05D005542 3.4e-139 498.8 350 67.7
Pp3c23_9790 Physcomitrium patens HOM05D004356 ORTHO05D005542 3.7e-138 495.4 333 69.1
AagrBONN_evm.TU.Sc2ySwM_344.5470 Anthoceros agrestis HOM05D004356 ORTHO05D005542 8.3e-138 494.2 341 65.7
C01p43120 Brassica napus HOM05D004356 ORTHO05D005542 2.4e-137 492.7 309 73.5
BolC1t04259H Brassica oleracea HOM05D004356 ORTHO05D005542 2.4e-137 492.7 309 73.5
Carub.0043s0008 Capsella rubella HOM05D004356 ORTHO05D005542 7.8e-136 487.6 297 73.7
arahy.Tifrunner.gnm1.ann1.1YQ32R Arachis hypogaea HOM05D004356 ORTHO05D005542 1.7e-135 486.5 323 70.6
SMO340G0097 Selaginella moellendorffii HOM05D004356 ORTHO05D005542 8.6e-135 484.2 334 66.8
arahy.Tifrunner.gnm1.ann1.L8UQBM Arachis hypogaea HOM05D004356 ORTHO05D005542 4.9e-130 468.4 277 76.5
CBR_g27760 Chara braunii HOM05D004356 ORTHO05D005542 4.9e-130 468.4 334 64.7
Carub.0043s0006 Capsella rubella HOM05D004356 ORTHO05D005542 4.1e-129 465.3 349 64.8
Sc23g0000510 Simmondsia chinensis HOM05D004356 ORTHO05D005542 7.8e-128 461.1 282 76.2
Lj4C732G13 Lonicera japonica HOM05D004356 ORTHO05D005542 1.5e-126 456.8 372 64.0
Carub.0043s0010 Capsella rubella HOM05D004356 ORTHO05D005542 2.4e-121 439.5 335 63.6
Cre03.g202113 Chlamydomonas reinhardtii HOM05D004356 ORTHO05D005542 1.4e-113 413.7 339 56.3
SHI20358 Sapria himalayana HOM05D004356 ORTHO05D005542 1.9e-113 413.3 324 62.3
Cpa.g.sc198.38 Carica papaya HOM05D004356 ORTHO05D005542 1.2e-107 394.0 261 72.0
MCO12G379 Micromonas commoda HOM05D004356 ORTHO05D005542 5.5e-105 385.2 321 56.4
PRCOL_00002575 Prasinoderma coloniale HOM05D004356 ORTHO05D005542 5.5e-105 385.2 317 57.4
Gohir.A05G222001 Gossypium hirsutum HOM05D004356 ORTHO05D005542 8.7e-103 377.9 280 65.7
CiPaw.16G030800 Carya illinoinensis HOM05D004356 ORTHO05D005542 1.0e-95 354.4 271 64.6
Actinidia29604 Actinidia chinensis HOM05D004356 ORTHO05D005542 1.0e-87 327.8 188 80.9
Nn1g08498 Nelumbo nucifera HOM05D004356 ORTHO05D005542 6.7e-87 325.1 198 78.3
ClCG00G002050 Citrullus lanatus HOM05D004356 ORTHO05D005542 1.5e-83 313.9 183 80.9
arahy.Tifrunner.gnm1.ann1.PGQR8U Arachis hypogaea HOM05D004356 ORTHO05D005542 1.9e-81 307.0 303 54.8
Nn1g08495 Nelumbo nucifera HOM05D004356 ORTHO05D005542 2.0e-70 270.4 157 77.7
RcHm_v2.0_Chr3g0491851 Rosa chinensis HOM05D004356 ORTHO05D005542 3.1e-68 263.1 275 49.8
ClCG08G011430 Citrullus lanatus HOM05D004356 ORTHO05D005542 4.1e-68 262.7 161 72.7
Carub.0516s0001 Capsella rubella HOM05D004356 ORTHO05D005542 2.4e-60 236.9 143 70.6
DCAR_012871 Daucus carota HOM05D004356 ORTHO05D005542 7.7e-59 231.9 303 44.6
arahy.Tifrunner.gnm1.ann1.X0GHYT Arachis hypogaea HOM05D004356 ORTHO05D005542 8.5e-58 228.4 236 53.4
arahy.Tifrunner.gnm1.ann1.HK5GW2 Arachis hypogaea HOM05D004356 ORTHO05D005542 2.8e-53 213.4 218 55.0
arahy.Tifrunner.gnm1.ann1.F88CCI Arachis hypogaea HOM05D004356 ORTHO05D005542 2.6e-46 190.3 282 42.9
Psat0s4321g0120 Pisum sativum HOM05D004356 ORTHO05D005542 1.3e-45 188.0 116 76.7
arahy.Tifrunner.gnm1.ann1.F3AJY4 Arachis hypogaea HOM05D004356 ORTHO05D005542 4.5e-43 179.5 130 68.5
arahy.Tifrunner.gnm1.ann1.D1TUAT Arachis hypogaea HOM05D004356 ORTHO05D005542 2.5e-41 173.7 129 63.6
arahy.Tifrunner.gnm1.ann1.FASD2W Arachis hypogaea HOM05D004356 ORTHO05D005542 4.7e-40 169.5 130 66.9
arahy.Tifrunner.gnm1.ann1.MUPT6T Arachis hypogaea HOM05D004356 ORTHO05D005542 4.7e-40 169.5 130 66.9
arahy.Tifrunner.gnm1.ann1.6VP8YS Arachis hypogaea HOM05D004356 ORTHO05D005542 6.1e-40 169.1 122 68.0
arahy.Tifrunner.gnm1.ann1.H4UIY2 Arachis hypogaea HOM05D004356 ORTHO05D005542 1.7e-29 134.4 159 46.5
arahy.Tifrunner.gnm1.ann1.JXGW17 Arachis hypogaea HOM05D004356 ORTHO05D005542 1.7e-29 134.4 159 46.5
EL10As8g23848 Beta vulgaris HOM05D004356 ORTHO05D090264 6.4e-29 132.5 231 35.9
Cfa024383 Carpinus fangiana HOM05D004356 ORTHO05D124745 4.9e-21 106.3 169 37.9
Zm00001eb297900 Zea mays HOM05D004356 ORTHO05D005542 5.6e-17 92.8 53 71.7
Zm00001eb297960 Zea mays HOM05D004356 ORTHO05D444542 5.6e-17 92.8 53 71.7
arahy.Tifrunner.gnm1.ann1.8IDC4C Arachis hypogaea HOM05D004356 ORTHO05D005542 7.6e-14 82.4 51 76.5


User provided reference genes

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