Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g17790 Coffea canephora HOM05D004540 ORTHO05D004852 1.1e-39 166.0 78 100.0
Thecc.01G124700 Theobroma cacao HOM05D004540 ORTHO05D004852 2.2e-22 108.6 78 65.4
QL06p029800 Quercus lobata HOM05D004540 ORTHO05D004852 1.1e-21 106.3 74 64.9
Cfa002837 Carpinus fangiana HOM05D004540 ORTHO05D004852 1.4e-21 105.9 75 65.3
TPR.G37334 Trifolium pratense HOM05D004540 ORTHO05D004852 9.1e-21 103.2 78 60.3
Gohir.A11G055800 Gossypium hirsutum HOM05D004540 ORTHO05D004852 2.7e-20 101.7 79 63.3
Gohir.D11G059900 Gossypium hirsutum HOM05D004540 ORTHO05D004852 2.7e-20 101.7 79 63.3
Gorai.007G064600 Gossypium raimondii HOM05D004540 ORTHO05D004852 4.5e-20 100.9 79 63.3
Haze_25134 Corylus avellana HOM05D004540 ORTHO05D004852 7.7e-20 100.1 75 62.7
CiPaw.03G127700 Carya illinoinensis HOM05D004540 ORTHO05D004852 1.7e-19 99.0 75 64.0
Potri.007G110700 Populus trichocarpa HOM05D004540 ORTHO05D004852 3.8e-19 97.8 78 57.7
Medtr8g092860 Medicago truncatula HOM05D004540 ORTHO05D004852 1.5e-18 95.9 79 58.2
CiPaw.04G085800 Carya illinoinensis HOM05D004540 ORTHO05D004852 4.2e-18 94.4 74 58.1
Potri.005G057400 Populus trichocarpa HOM05D004540 ORTHO05D004852 4.2e-18 94.4 78 57.7
Gohir.A05G386200 Gossypium hirsutum HOM05D004540 ORTHO05D004852 7.2e-18 93.6 81 55.6
Prupe.6G159700 Prunus persica HOM05D004540 ORTHO05D004852 7.2e-18 93.6 78 56.4
Gohir.D04G023300 Gossypium hirsutum HOM05D004540 ORTHO05D004852 9.5e-18 93.2 81 55.6
Gorai.012G033600 Gossypium raimondii HOM05D004540 ORTHO05D004852 9.5e-18 93.2 81 55.6
Phvul.002G270200 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 1.6e-17 92.4 74 59.5
Lj4g0001726 Lotus japonicus HOM05D004540 ORTHO05D004852 2.1e-17 92.0 75 61.3
Lalb_Chr12g0203271 Lupinus albus HOM05D004540 ORTHO05D004852 2.1e-17 92.0 76 60.5
Phvul.009G148100 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 2.1e-17 92.0 69 59.4
Cpa.g.sc42.109 Carica papaya HOM05D004540 ORTHO05D004852 3.6e-17 91.3 78 57.7
Ciclev10026873m.g Citrus clementina HOM05D004540 ORTHO05D004852 3.6e-17 91.3 77 57.1
Gohir.A10G083507 Gossypium hirsutum HOM05D004540 ORTHO05D004852 8.0e-17 90.1 78 51.3
Medtr3g095690 Medicago truncatula HOM05D004540 ORTHO05D004852 1.0e-16 89.7 76 56.6
TPR.G18724 Trifolium pratense HOM05D004540 ORTHO05D004852 1.0e-16 89.7 70 57.1
Manes.12G152100 Manihot esculenta HOM05D004540 ORTHO05D004852 3.0e-16 88.2 77 57.1
Lalb_Chr08g0238521 Lupinus albus HOM05D004540 ORTHO05D004852 4.0e-16 87.8 78 57.7
Gohir.D10G105766 Gossypium hirsutum HOM05D004540 ORTHO05D004852 5.2e-16 87.4 78 50.0
Gorai.011G115500 Gossypium raimondii HOM05D004540 ORTHO05D004852 5.2e-16 87.4 78 50.0
Manes.13G071600 Manihot esculenta HOM05D004540 ORTHO05D004852 8.9e-16 86.7 80 57.5
Glyma.04G215100 Glycine max HOM05D004540 ORTHO05D004852 1.7e-14 82.4 51 72.5
MD01G1010200 Malus domestica HOM05D004540 ORTHO05D004852 8.3e-14 80.1 83 54.2
Eucgr.I00231 Eucalyptus grandis HOM05D004540 ORTHO05D004852 1.4e-13 79.3 73 58.9
Glyma.08G147100 Glycine max HOM05D004540 ORTHO05D004852 1.4e-13 79.3 79 55.7
Thecc.08G147500 Theobroma cacao HOM05D004540 ORTHO05D004852 1.8e-13 79.0 74 51.4
CSS0044504 Camellia sinensis var. sinensis HOM05D004540 ORTHO05D004852 3.2e-13 78.2 78 59.0
FvH4_1g23990 Fragaria vesca HOM05D004540 ORTHO05D004852 3.2e-13 78.2 95 46.3
FAN23G3045 Fragaria x ananassa HOM05D004540 ORTHO05D004852 3.2e-13 78.2 95 46.3
FAN26G2008 Fragaria x ananassa HOM05D004540 ORTHO05D004852 3.2e-13 78.2 95 46.3
FAN19G2513 Fragaria x ananassa HOM05D004540 ORTHO05D004852 4.1e-13 77.8 95 46.3
Glyma.05G189500 Glycine max HOM05D004540 ORTHO05D004852 5.4e-13 77.4 75 56.0
Nn1g06160 Nelumbo nucifera HOM05D004540 ORTHO05D004852 5.4e-13 77.4 74 55.4
RcHm_v2.0_Chr2g0120121 Rosa chinensis HOM05D004540 ORTHO05D004852 1.2e-12 76.3 95 46.3
Lalb_Chr07g0184521 Lupinus albus HOM05D004540 ORTHO05D004852 1.6e-12 75.9 78 52.6
Lalb_Chr13g0296521 Lupinus albus HOM05D004540 ORTHO05D004852 1.6e-12 75.9 78 51.3
Glyma.06G151100 Glycine max HOM05D004540 ORTHO05D004852 2.7e-12 75.1 50 70.0
Sed0025334 Sechium edule HOM05D004540 ORTHO05D004852 1.3e-11 72.8 71 52.1
Lalb_Chr06g0161521 Lupinus albus HOM05D004540 ORTHO05D004852 1.7e-11 72.4 67 52.2
DCAR_001351 Daucus carota HOM05D004540 ORTHO05D004852 2.3e-11 72.0 70 48.6
MELO3C008039.2 Cucumis melo HOM05D004540 ORTHO05D004852 5.0e-11 70.9 47 70.2
Nn5g28680 Nelumbo nucifera HOM05D004540 ORTHO05D004852 1.1e-10 69.7 74 48.6
Lalb_Chr21g0305401 Lupinus albus HOM05D004540 ORTHO05D004852 1.5e-10 69.3 59 57.6
CsaV3_6G041820 Cucumis sativus L. HOM05D004540 ORTHO05D004852 2.5e-10 68.6 46 69.6
Migut.H01103 Erythranthe guttata HOM05D004540 ORTHO05D004852 3.3e-10 68.2 62 56.5
CiPaw.16G014800 Carya illinoinensis HOM05D004540 ORTHO05D004852 5.6e-10 67.4 67 49.3
Lj5g0026068 Lotus japonicus HOM05D004540 ORTHO05D004852 7.3e-10 67.0 64 50.0
Manes.18G089800 Manihot esculenta HOM05D004540 ORTHO05D004852 1.2e-09 66.2 68 54.4
Potri.002G070401 Populus trichocarpa HOM05D004540 ORTHO05D004852 1.6e-09 65.9 72 51.4
CARHR094090 Cardamine hirsuta HOM05D004540 ORTHO05D004852 3.6e-09 64.7 76 47.4
CARHR278640 Cardamine hirsuta HOM05D004540 ORTHO05D004852 3.6e-09 64.7 67 47.8
Phvul.004G098900 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 4.7e-09 64.3 65 50.8
BcaB04g19000 Brassica carinata HOM05D004540 ORTHO05D004852 6.2e-09 63.9 76 46.1
Phvul.007G078400 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 6.2e-09 63.9 68 51.5
Manes.02G177000 Manihot esculenta HOM05D004540 ORTHO05D004852 8.0e-09 63.5 68 52.9
QL02p024551 Quercus lobata HOM05D004540 ORTHO05D004852 1.0e-08 63.2 70 48.6
Ciclev10003011m.g Citrus clementina HOM05D004540 ORTHO05D004852 1.4e-08 62.8 75 45.3
Haze_17734 Corylus avellana HOM05D004540 ORTHO05D004852 1.4e-08 62.8 78 46.2
Migut.L00808 Erythranthe guttata HOM05D004540 ORTHO05D004852 1.4e-08 62.8 82 40.2
A03p40790 Brassica napus HOM05D004540 ORTHO05D004852 1.8e-08 62.4 76 44.7
BraA03t13237Z Brassica rapa HOM05D004540 ORTHO05D004852 1.8e-08 62.4 76 44.7
Glyma.20G165500 Glycine max HOM05D004540 ORTHO05D004852 1.8e-08 62.4 70 47.1
A01p35740 Brassica napus HOM05D004540 ORTHO05D004852 2.3e-08 62.0 81 40.7
C03p49670 Brassica napus HOM05D004540 ORTHO05D004852 2.3e-08 62.0 76 44.7
BolC3t17265H Brassica oleracea HOM05D004540 ORTHO05D004852 2.3e-08 62.0 76 44.7
BraA01t03656Z Brassica rapa HOM05D004540 ORTHO05D004852 2.3e-08 62.0 81 40.7
Glyma.10G226800 Glycine max HOM05D004540 ORTHO05D004852 2.3e-08 62.0 68 51.5
Thhalv10022275m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 3.1e-08 61.6 76 46.1
Glyma.16G170400 Glycine max HOM05D004540 ORTHO05D004852 3.1e-08 61.6 72 48.6
Hma1.2p1_0483F.1_g162780 Hydrangea macrophylla HOM05D004540 ORTHO05D004852 3.1e-08 61.6 71 45.1
MD05G1020400 Malus domestica HOM05D019963 ORTHO05D004852 3.1e-08 61.6 74 48.6
Potri.005G189900 Populus trichocarpa HOM05D004540 ORTHO05D004852 3.1e-08 61.6 72 48.6
SGA_v2.0_scaffold137G35143 Striga asiatica HOM05D004540 ORTHO05D004852 4.0e-08 61.2 71 47.9
Thhalv10005301m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 5.2e-08 60.8 67 46.3
BcaC09g48828 Brassica carinata HOM05D004540 ORTHO05D004852 6.8e-08 60.5 77 41.6
C01p45480 Brassica napus HOM05D004540 ORTHO05D004852 6.8e-08 60.5 77 41.6
BolC1t04514H Brassica oleracea HOM05D004540 ORTHO05D004852 6.8e-08 60.5 77 41.6
Medtr1g099210 Medicago truncatula HOM05D004540 ORTHO05D004852 6.8e-08 60.5 66 45.5
CiPaw.15G019000 Carya illinoinensis HOM05D004540 ORTHO05D004852 8.9e-08 60.1 76 44.7
BcaB04g20754 Brassica carinata HOM05D004540 ORTHO05D004852 1.2e-07 59.7 78 41.0
Cfa018340 Carpinus fangiana HOM05D004540 ORTHO05D004852 1.2e-07 59.7 74 45.9
AT5G64667 Arabidopsis thaliana HOM05D004540 ORTHO05D004852 1.5e-07 59.3 68 42.6
Hma1.2p1_1454F.1_g284340 Hydrangea macrophylla HOM05D004540 ORTHO05D004852 1.5e-07 59.3 71 43.7
BcaB01g05561 Brassica carinata HOM05D004540 ORTHO05D004852 4.4e-07 57.8 78 42.3
C03p04700 Brassica napus HOM05D004540 ORTHO05D004852 4.4e-07 57.8 78 42.3
Carub.0008s2546 Capsella rubella HOM05D004540 ORTHO05D004852 4.4e-07 57.8 60 46.7
Sabra02G0055000 Salix brachista HOM05D004540 ORTHO05D004852 4.4e-07 57.8 71 47.9
Thhalv10015116m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 7.5e-07 57.0 75 40.0
AT3G18715 Arabidopsis thaliana HOM05D004540 ORTHO05D004852 9.8e-07 56.6 75 44.0
BcaC01g02698 Brassica carinata HOM05D004540 ORTHO05D004852 9.8e-07 56.6 66 47.0
A06p31460 Brassica napus HOM05D004540 ORTHO05D004852 9.8e-07 56.6 66 47.0
C03p61500 Brassica napus HOM05D004540 ORTHO05D004852 9.8e-07 56.6 66 47.0
BolC3t18411H Brassica oleracea HOM05D004540 ORTHO05D004852 9.8e-07 56.6 66 47.0
BraA06t26083Z Brassica rapa HOM05D004540 ORTHO05D004852 9.8e-07 56.6 66 47.0
BcaB02g09810 Brassica carinata HOM05D004540 ORTHO05D004852 1.3e-06 56.2 70 40.0
BcaB06g25922 Brassica carinata HOM05D004540 ORTHO05D004852 1.3e-06 56.2 78 42.3
BcaNung06138 Brassica carinata HOM05D004540 ORTHO05D004852 1.3e-06 56.2 78 42.3
DCAR_014344 Daucus carota HOM05D004540 ORTHO05D004852 1.3e-06 56.2 57 47.4
Prupe.8G024400 Prunus persica HOM05D004540 ORTHO05D004852 1.3e-06 56.2 72 45.8
BcaC05g28580 Brassica carinata HOM05D004540 ORTHO05D004852 2.2e-06 55.5 78 41.0
C05p46830 Brassica napus HOM05D004540 ORTHO05D004852 2.2e-06 55.5 78 41.0
BolC5t33413H Brassica oleracea HOM05D004540 ORTHO05D004852 2.2e-06 55.5 78 41.0
AL6G20210 Arabidopsis lyrata HOM05D004540 ORTHO05D004852 2.9e-06 55.1 80 37.5
A05p30900 Brassica napus HOM05D004540 ORTHO05D004852 2.9e-06 55.1 78 41.0
BraA05t21932Z Brassica rapa HOM05D004540 ORTHO05D004852 2.9e-06 55.1 78 41.0
AL8G42080 Arabidopsis lyrata HOM05D004540 ORTHO05D004852 3.7e-06 54.7 60 46.7
Migut.L00903 Erythranthe guttata HOM05D004540 ORTHO05D004852 3.7e-06 54.7 74 44.6
BcaC04g23300 Brassica carinata HOM05D004540 ORTHO05D004852 4.9e-06 54.3 72 40.3
C09p09950 Brassica napus HOM05D004540 ORTHO05D004852 4.9e-06 54.3 72 40.3
BolC9t53903H Brassica oleracea HOM05D004540 ORTHO05D004852 4.9e-06 54.3 72 40.3
Gohir.D05G243600 Gossypium hirsutum HOM05D037961 ORTHO05D004852 4.9e-06 54.3 78 39.7
TPR.G10141 Trifolium pratense HOM05D004540 ORTHO05D004852 6.4e-06 53.9 74 43.2


User provided reference genes

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