Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g17610 Coffea canephora HOM05D005613 ORTHO05D006903 1.4e-164 582.8 279 100.0
Cc00_g03610 Coffea canephora HOM05D005613 ORTHO05D006903 7.2e-161 570.5 280 98.2
CAN.G767.35 Capsicum annuum HOM05D005613 ORTHO05D006903 9.8e-142 506.9 271 85.2
PGSC0003DMG400004674 Solanum tuberosum HOM05D005613 ORTHO05D006903 5.4e-140 501.1 271 84.1
Solyc12g098640.3 Solanum lycopersicum HOM05D005613 ORTHO05D006903 9.2e-140 500.4 271 84.1
Sopen12g033400 Solanum pennellii HOM05D005613 ORTHO05D006903 2.0e-139 499.2 271 83.8
PGR044G0561 Punica granatum HOM05D005613 ORTHO05D006903 4.6e-139 498.0 276 82.2
MSTRG.17588 Avicennia marina HOM05D005613 ORTHO05D006903 1.0e-138 496.9 270 84.1
Dinv11157 Davidia involucrata HOM05D005613 ORTHO05D006903 8.6e-138 493.8 276 81.5
CSS0000406 Camellia sinensis var. sinensis HOM05D005613 ORTHO05D006903 2.5e-137 492.3 276 80.8
Glyma.06G171500 Glycine max HOM05D005613 ORTHO05D006903 5.6e-137 491.1 272 83.8
Lj1g0013310 Lotus japonicus HOM05D005613 ORTHO05D006903 9.5e-137 490.3 273 82.4
CANSAT80G2472 Cannabis sativa HOM05D005613 ORTHO05D006903 2.1e-136 489.2 276 81.2
Actinidia15836 Actinidia chinensis HOM05D005613 ORTHO05D006903 3.6e-136 488.4 273 81.0
Glyma.04G194500 Glycine max HOM05D005613 ORTHO05D006903 4.7e-136 488.0 273 82.8
Nitab4.5_0007541g0020 Nicotiana tabacum HOM05D005613 ORTHO05D006903 6.2e-136 487.6 271 82.7
Nitab4.5_0011040g0030 Nicotiana tabacum HOM05D005613 ORTHO05D006903 6.2e-136 487.6 271 82.7
MD06G1143700 Malus domestica HOM05D005613 ORTHO05D006903 1.1e-135 486.9 278 80.6
MD14G1159000 Malus domestica HOM05D005613 ORTHO05D006903 3.1e-135 485.3 278 80.6
Peaxi162Scf00378g00519 Petunia axillaris HOM05D005613 ORTHO05D006903 3.1e-135 485.3 270 82.6
Phvul.009G167500 Phaseolus vulgaris HOM05D005613 ORTHO05D006903 3.1e-135 485.3 273 82.8
Prupe.5G152900 Prunus persica HOM05D005613 ORTHO05D006903 5.2e-135 484.6 276 81.5
TAR371G0420 Trochodendron aralioides HOM05D005613 ORTHO05D006903 5.2e-135 484.6 276 80.4
Aqoxy5G04126 Aquilegia oxysepala HOM05D005613 ORTHO05D006903 2.6e-134 482.3 272 81.2
RcHm_v2.0_Chr7g0190451 Rosa chinensis HOM05D005613 ORTHO05D006903 2.2e-133 479.2 273 80.6
CiPaw.11G009100 Carya illinoinensis HOM05D005613 ORTHO05D006903 2.9e-133 478.8 270 81.9
Thecc.03G126700 Theobroma cacao HOM05D005613 ORTHO05D006903 3.7e-133 478.4 271 81.2
Eucgr.K02737 Eucalyptus grandis HOM05D005613 ORTHO05D006903 4.9e-133 478.0 274 79.6
Lalb_Chr11g0069651 Lupinus albus HOM05D005613 ORTHO05D006903 3.2e-132 475.3 276 79.7
Manes.06G118100 Manihot esculenta HOM05D005613 ORTHO05D006903 3.2e-132 475.3 276 78.6
TWI39G1237 Tripterygium wilfordii HOM05D005613 ORTHO05D006903 5.4e-132 474.6 276 77.2
GSVIVG01008514001 Vitis vinifera HOM05D005613 ORTHO05D006903 5.4e-132 474.6 273 80.6
Medtr3g089010 Medicago truncatula HOM05D005613 ORTHO05D006903 7.1e-132 474.2 273 79.1
THA.LOC104803145 Tarenaya hassleriana HOM05D005613 ORTHO05D006903 9.2e-132 473.8 271 78.2
Manes.14G052800 Manihot esculenta HOM05D005613 ORTHO05D006903 1.2e-131 473.4 276 77.9
VMungo1309G0937 Vigna mungo HOM05D005613 ORTHO05D006903 2.7e-131 472.2 274 81.0
Ciclev10021465m.g Citrus clementina HOM05D005613 ORTHO05D006903 3.5e-131 471.9 276 78.6
Haze_07235 Corylus avellana HOM05D005613 ORTHO05D006903 4.6e-131 471.5 311 72.3
FvH4_5g07950 Fragaria vesca HOM05D005613 ORTHO05D006903 4.6e-131 471.5 273 79.5
SalBow7G2516 Salvia bowleyana HOM05D005613 ORTHO05D006903 4.6e-131 471.5 276 79.0
Psat5g169720 Pisum sativum HOM05D005613 ORTHO05D006903 6.0e-131 471.1 273 79.1
Carub.0008s1047 Capsella rubella HOM05D005613 ORTHO05D006903 7.8e-131 470.7 271 77.9
Gohir.A07G051800 Gossypium hirsutum HOM05D005613 ORTHO05D006903 7.8e-131 470.7 271 79.7
Gohir.D07G056300 Gossypium hirsutum HOM05D005613 ORTHO05D006903 7.8e-131 470.7 271 80.1
Gorai.001G059700 Gossypium raimondii HOM05D005613 ORTHO05D006903 7.8e-131 470.7 271 80.1
TWI23G0755 Tripterygium wilfordii HOM05D005613 ORTHO05D006903 7.8e-131 470.7 273 78.0
AT5G50375 Arabidopsis thaliana HOM05D005613 ORTHO05D006903 1.0e-130 470.3 271 78.2
CARHR258110 Cardamine hirsuta HOM05D005613 ORTHO05D006903 1.0e-130 470.3 271 77.9
Duzib205G1234 Durio zibethinus HOM05D005613 ORTHO05D006903 2.3e-130 469.2 270 80.0
Aa31LG3G6910 Aethionema arabicum HOM05D005613 ORTHO05D006903 3.0e-130 468.8 273 79.1
Potri.015G093500 Populus trichocarpa HOM05D005613 ORTHO05D006903 3.0e-130 468.8 276 76.4
Migut.N02308 Erythranthe guttata HOM05D005613 ORTHO05D006903 3.9e-130 468.4 271 78.6
AL8G24500 Arabidopsis lyrata HOM05D005613 ORTHO05D006903 6.6e-130 467.6 271 77.9
HanXRQChr09g0273061 Helianthus annuus HOM05D005613 ORTHO05D006903 6.6e-130 467.6 275 77.5
Lsat_1_v5_gn_4_76740 Lactuca sativa HOM05D005613 ORTHO05D006903 1.1e-129 466.8 275 78.2
arahy.Tifrunner.gnm1.ann1.91S2FI Arachis hypogaea HOM05D005613 ORTHO05D006903 1.5e-129 466.5 294 75.2
BcaC01g04807 Brassica carinata HOM05D005613 ORTHO05D006903 1.5e-129 466.5 271 77.5
TPR.G26132 Trifolium pratense HOM05D005613 ORTHO05D006903 1.9e-129 466.1 299 73.2
BcaB01g02892 Brassica carinata HOM05D005613 ORTHO05D006903 2.5e-129 465.7 271 77.5
EL10Ac5g11023 Beta vulgaris HOM05D005613 ORTHO05D006903 3.3e-129 465.3 270 77.8
QL10p004191 Quercus lobata HOM05D005613 ORTHO05D006903 3.3e-129 465.3 278 77.3
ECA232G4063 Erigeron canadensis HOM05D005613 ORTHO05D006903 4.3e-129 464.9 275 76.7
CsaV3_1G009570 Cucumis sativus L. HOM05D005613 ORTHO05D006903 7.3e-129 464.2 270 78.5
Hund02427 Selenicereus undatus HOM05D005613 ORTHO05D006903 9.5e-129 463.8 273 76.2
MELO3C002354.2 Cucumis melo HOM05D005613 ORTHO05D006903 1.2e-128 463.4 270 78.5
AUR62032039 Chenopodium quinoa HOM05D005613 ORTHO05D006903 1.6e-128 463.0 272 76.8
SpUn0050_0040 Schrenkiella parvula HOM05D005613 ORTHO05D006903 2.1e-128 462.6 271 77.1
QL10p004130 Quercus lobata HOM05D005613 ORTHO05D006903 2.8e-128 462.2 278 77.0
Thhalv10014300m.g Eutrema salsugineum HOM05D005613 ORTHO05D006903 3.6e-128 461.8 271 76.8
C03p33570 Brassica napus HOM05D005613 ORTHO05D006903 4.7e-128 461.5 273 76.9
A03p27830 Brassica napus HOM05D005613 ORTHO05D006903 1.4e-127 459.9 278 75.5
PSO017G2706 Papaver somniferum HOM05D005613 ORTHO05D006903 1.4e-127 459.9 270 77.8
PSO017G3077 Papaver somniferum HOM05D005613 ORTHO05D006903 1.8e-127 459.5 270 77.8
BolC3t15677H Brassica oleracea HOM05D005613 ORTHO05D006903 2.3e-127 459.1 279 75.3
BraA03t11994Z Brassica rapa HOM05D005613 ORTHO05D006903 3.1e-127 458.8 284 73.9
PSO478G0845 Papaver somniferum HOM05D005613 ORTHO05D006903 5.2e-127 458.0 270 77.4
Sed0021273 Sechium edule HOM05D005613 ORTHO05D006903 8.9e-127 457.2 276 76.8
Actinidia25589 Actinidia chinensis HOM05D005613 ORTHO05D006903 2.0e-126 456.1 257 80.9
PSO675G0985 Papaver somniferum HOM05D005613 ORTHO05D006903 7.6e-126 454.1 270 76.7
arahy.Tifrunner.gnm1.ann1.AY81KB Arachis hypogaea HOM05D005613 ORTHO05D006903 2.2e-125 452.6 273 78.4
Lj9C477T8 Lonicera japonica HOM05D005613 ORTHO05D006903 1.1e-124 450.3 278 77.0
Sed0001462 Sechium edule HOM05D005613 ORTHO05D006903 4.1e-124 448.4 278 75.5
FAN13G2894 Fragaria x ananassa HOM05D005613 ORTHO05D006903 9.2e-124 447.2 273 76.6
A09p55960 Brassica napus HOM05D005613 ORTHO05D006903 4.6e-123 444.9 273 74.0
BraA09t40998Z Brassica rapa HOM05D005613 ORTHO05D006903 4.6e-123 444.9 273 74.0
Rhsim08G0188600 Rhododendron simsii HOM05D005613 ORTHO05D006903 7.8e-123 444.1 259 79.5
ClCG03G003690 Citrullus lanatus HOM05D005613 ORTHO05D006903 1.0e-122 443.7 316 67.4
unitig_27.g24986 Utricularia gibba HOM05D005613 ORTHO05D006903 1.7e-122 443.0 270 74.4
BcaB08g35134 Brassica carinata HOM05D005613 ORTHO05D006903 2.3e-122 442.6 271 74.2
SEGI_09495 Sequoiadendron giganteum HOM05D005613 ORTHO05D006903 6.6e-122 441.0 271 75.6
DCAR_016405 Daucus carota HOM05D005613 ORTHO05D006903 8.6e-122 440.7 273 75.5
BolC8t51467H Brassica oleracea HOM05D005613 ORTHO05D006903 3.3e-121 438.7 271 73.4
C08p38940 Brassica napus HOM05D005613 ORTHO05D006903 9.6e-121 437.2 271 73.1
Zm00001eb265520 Zea mays HOM05D005613 ORTHO05D006903 9.6e-121 437.2 269 75.8
FAN18G4059 Fragaria x ananassa HOM05D005613 ORTHO05D006903 8.1e-120 434.1 313 68.1
CDE02G3999 Ceratophyllum demersum HOM05D005613 ORTHO05D006903 9.9e-118 427.2 271 72.7
DCAR_021614 Daucus carota HOM05D005613 ORTHO05D006903 9.9e-118 427.2 274 71.2
Sabra15G0115100 Salix brachista HOM05D005613 ORTHO05D006903 6.4e-117 424.5 289 68.9
Dinv04871 Davidia involucrata HOM05D005613 ORTHO05D006903 2.4e-116 422.5 278 72.3
ATR0680G053 Amborella trichopoda HOM05D005613 ORTHO05D006903 3.2e-116 422.2 267 73.0
Nn4g22373 Nelumbo nucifera HOM05D005613 ORTHO05D006903 1.3e-114 416.8 271 72.3
arahy.Tifrunner.gnm1.ann1.LN4RIT Arachis hypogaea HOM05D005613 ORTHO05D006903 2.3e-114 416.0 237 80.6
unitig_699.g19129 Utricularia gibba HOM05D005613 ORTHO05D006903 3.0e-114 415.6 271 71.2
BcaC07g40897 Brassica carinata HOM05D005613 ORTHO05D006903 8.7e-114 414.1 275 69.8
FAN08G1682 Fragaria x ananassa HOM05D005613 ORTHO05D006903 3.6e-112 408.7 301 66.8
vmacro19214 Vaccinium macrocarpon HOM05D005613 ORTHO05D006903 9.9e-110 400.6 356 57.6
COL.COLO4_28085 Corchorus olitorius HOM05D005613 ORTHO05D006903 7.9e-107 391.0 219 82.6
AUR62036512 Chenopodium quinoa HOM05D005613 ORTHO05D006903 7.4e-105 384.4 241 72.6
CDE09G1331 Ceratophyllum demersum HOM05D005613 ORTHO05D006903 1.4e-100 370.2 271 66.1
Cpa.g.sc13.142 Carica papaya HOM05D005613 ORTHO05D006903 3.2e-100 369.0 213 78.9
BcaB05g24059 Brassica carinata HOM05D005613 ORTHO05D006903 7.1e-100 367.9 289 62.3
SMO180G0005 Selaginella moellendorffii HOM05D005613 ORTHO05D006903 2.5e-97 359.4 274 59.9
Aqoxy22s001 Aquilegia oxysepala HOM05D005613 ORTHO05D006903 1.3e-96 357.1 199 81.9
SpUn0508_0010 Schrenkiella parvula HOM05D005613 ORTHO05D006903 1.4e-95 353.6 211 75.4
Mapoly0019s0004 Marchantia polymorpha HOM05D005613 ORTHO05D006903 6.9e-95 351.3 275 60.4
CiPaw.12G041000 Carya illinoinensis HOM05D005613 ORTHO05D006903 2.0e-94 349.7 197 81.7
Pp3c14_22450 Physcomitrium patens HOM05D005613 ORTHO05D006903 7.1e-92 341.3 272 59.6
Aqoxy1G01617 Aquilegia oxysepala HOM05D005613 ORTHO05D006903 5.9e-86 321.6 213 72.8
SHI39270 Sapria himalayana HOM05D005613 ORTHO05D006903 5.5e-84 315.1 189 78.3
SHI42710 Sapria himalayana HOM05D005613 ORTHO05D006903 5.5e-84 315.1 189 78.3
Cre16.g657300 Chlamydomonas reinhardtii HOM05D005613 ORTHO05D006903 2.2e-80 303.1 271 55.7
AUR62032713 Chenopodium quinoa HOM05D005613 ORTHO05D006903 1.8e-79 300.1 229 64.2
AagrBONN_evm.TU.Sc2ySwM_362.2466 Anthoceros agrestis HOM05D005613 ORTHO05D006903 4.5e-78 295.4 226 63.7
SGA_v2.0_scaffold42G16110 Striga asiatica HOM05D005613 ORTHO05D006903 5.0e-69 265.4 290 49.3
SGA_v2.0_scaffold115G32075 Striga asiatica HOM05D005613 ORTHO05D006903 8.8e-66 254.6 151 77.5
AagrBONN_evm.TU.Sc2ySwM_117.1130 Anthoceros agrestis HOM05D005613 ORTHO05D006903 5.9e-62 241.9 182 61.5
HPP92_006202 Vanilla planifolia HOM05D005613 ORTHO05D006903 1.7e-61 240.4 156 73.7
CBR_g48821 Chara braunii HOM05D005613 ORTHO05D006903 3.6e-59 232.6 212 50.5
SMO353G0009 Selaginella moellendorffii HOM05D005613 ORTHO05D006903 1.2e-54 217.6 265 44.9
Ah.11g044830 Amaranthus hybridus HOM05D006563 ORTHO05D008154 2.7e-54 216.5 136 72.8
SGA_v2.0_scaffold115G32072 Striga asiatica HOM05D000001 ORTHO05D000003 2.4e-47 193.4 191 50.3
PRCOL_00007276 Prasinoderma coloniale HOM05D005613 ORTHO05D006903 3.7e-40 169.5 272 38.2
HPP92_006201 Vanilla planifolia HOM05D005613 ORTHO05D006903 1.4e-39 167.5 95 76.8
MCO03G530 Micromonas commoda HOM05D005613 ORTHO05D006903 2.0e-38 163.7 211 40.8
SGA_v2.0_scaffold3G01513 Striga asiatica HOM05D005613 ORTHO05D006903 1.7e-29 134.0 101 60.4
Os11g0302500 Oryza sativa ssp. japonica HOM05D005613 ORTHO05D006903 9.5e-28 128.3 82 69.5
CBR_g48823 Chara braunii HOM05D005613 ORTHO05D006903 9.2e-15 85.1 66 57.6
SEGI_05867 Sequoiadendron giganteum HOM05D005613 ORTHO05D006903 3.5e-14 83.2 38 89.5
arahy.Tifrunner.gnm1.ann1.W1BQBA Arachis hypogaea HOM05D005613 ORTHO05D006903 1.6e-11 74.3 45 68.9


User provided reference genes

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