Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g16560 Coffea canephora HOM05D004165 ORTHO05D005063 0.0e+00 6469.8 3263 100.0
Dinv21242 Davidia involucrata HOM05D004165 ORTHO05D005063 0.0e+00 4084.6 3320 65.1
CSS0013219 Camellia sinensis var. sinensis HOM05D004165 ORTHO05D005063 0.0e+00 3859.7 3324 62.5
Lj4C863G6 Lonicera japonica HOM05D004165 ORTHO05D005063 0.0e+00 3773.0 3298 61.8
CiPaw.03G132500 Carya illinoinensis HOM05D004165 ORTHO05D005063 0.0e+00 3741.8 3319 61.2
Cfa002775 Carpinus fangiana HOM05D004165 ORTHO05D005063 0.0e+00 3710.2 3311 60.5
Sopen04g022920 Solanum pennellii HOM05D004165 ORTHO05D005063 0.0e+00 3709.5 3288 60.3
TAR628G1404 Trochodendron aralioides HOM05D004165 ORTHO05D005063 0.0e+00 3695.6 3343 60.5
Atru.chr4.460 Acer truncatum HOM05D004165 ORTHO05D005063 0.0e+00 3662.5 3320 60.2
MSTRG.23305 Avicennia marina HOM05D004165 ORTHO05D005063 0.0e+00 3653.6 3293 60.0
Migut.H02450 Erythranthe guttata HOM05D004165 ORTHO05D005063 0.0e+00 3651.7 3293 60.2
vmacro12886 Vaccinium macrocarpon HOM05D004165 ORTHO05D005063 0.0e+00 3647.1 3423 58.7
Thecc.01G115900 Theobroma cacao HOM05D004165 ORTHO05D005063 0.0e+00 3616.2 3315 58.8
Prupe.6G168600 Prunus persica HOM05D004165 ORTHO05D005063 0.0e+00 3607.4 3307 58.8
Actinidia28449 Actinidia chinensis HOM05D004165 ORTHO05D005063 0.0e+00 3598.5 3293 59.4
FAN26G2965 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 3586.6 3313 58.3
Potri.007G078650 Populus trichocarpa HOM05D004165 ORTHO05D005063 0.0e+00 3580.8 3321 58.8
FvH4_1g23050 Fragaria vesca HOM05D004165 ORTHO05D005063 0.0e+00 3579.6 3313 58.3
Gohir.D12G093100 Gossypium hirsutum HOM05D004165 ORTHO05D005063 0.0e+00 3576.6 3303 58.9
Manes.12G144600 Manihot esculenta HOM05D004165 ORTHO05D005063 0.0e+00 3575.0 3315 58.9
Potri.005G086100 Populus trichocarpa HOM05D004165 ORTHO05D005063 0.0e+00 3574.6 3320 58.8
FAN23G0468 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 3573.1 3311 58.1
Gohir.A12G083100 Gossypium hirsutum HOM05D004165 ORTHO05D005063 0.0e+00 3571.6 3309 58.8
Gorai.008G100800 Gossypium raimondii HOM05D004165 ORTHO05D005063 0.0e+00 3569.2 3314 58.7
FAN19G2841 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 3564.2 3313 58.0
RcHm_v2.0_Chr2g0117761 Rosa chinensis HOM05D004165 ORTHO05D005063 0.0e+00 3560.4 3319 58.2
Nn5g28841 Nelumbo nucifera HOM05D004165 ORTHO05D005063 0.0e+00 3556.9 3343 58.3
SalBow6G1439 Salvia bowleyana HOM05D004165 ORTHO05D005063 0.0e+00 3547.3 3300 58.7
FAN28G2110 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 3545.7 3314 57.8
Sabra05G0071000 Salix brachista HOM05D004165 ORTHO05D005063 0.0e+00 3539.6 3383 57.8
MD15G1330600 Malus domestica HOM05D004165 ORTHO05D005063 0.0e+00 3525.7 3310 57.8
CANSAT01G1143 Cannabis sativa HOM05D004165 ORTHO05D005063 0.0e+00 3479.5 3311 57.6
HanXRQChr08g0218061 Helianthus annuus HOM05D004165 ORTHO05D005063 0.0e+00 3420.2 3287 57.0
Ca_17683_v3 Cicer arietinum L. HOM05D004165 ORTHO05D005063 0.0e+00 3409.0 3327 56.3
arahy.Tifrunner.gnm1.ann1.KAY7L7 Arachis hypogaea HOM05D004165 ORTHO05D005063 0.0e+00 3401.7 3335 56.1
arahy.Tifrunner.gnm1.ann1.F6TX6D Arachis hypogaea HOM05D004165 ORTHO05D005063 0.0e+00 3400.5 3335 56.0
Phvul.002G266300 Phaseolus vulgaris HOM05D004165 ORTHO05D005063 0.0e+00 3376.3 3326 56.4
Lj4g0014922 Lotus japonicus HOM05D004165 ORTHO05D005063 0.0e+00 3375.9 3327 56.1
Lalb_Chr13g0296271 Lupinus albus HOM05D004165 ORTHO05D005063 0.0e+00 3373.2 3331 56.1
Glyma.08G143200 Glycine max HOM05D004165 ORTHO05D005063 0.0e+00 3372.8 3333 56.2
PGR004G2408 Punica granatum HOM05D004165 ORTHO05D005063 0.0e+00 3366.6 3311 56.2
ECA233G2130 Erigeron canadensis HOM05D004165 ORTHO05D005063 0.0e+00 3358.2 3186 57.3
PSO210G1143 Papaver somniferum HOM05D004165 ORTHO05D005063 0.0e+00 3356.6 3353 55.4
Solyc04g051570.4 Solanum lycopersicum HOM05D004165 ORTHO05D005063 0.0e+00 3356.2 2735 64.2
Aqoxy5G02023 Aquilegia oxysepala HOM05D004165 ORTHO05D005063 0.0e+00 3345.1 3330 55.3
PSO170G0015 Papaver somniferum HOM05D004165 ORTHO05D005063 0.0e+00 3337.4 3355 55.4
Medtr8g092100 Medicago truncatula HOM05D004165 ORTHO05D005063 0.0e+00 3320.0 3305 55.4
Duzib147G0774 Durio zibethinus HOM05D004165 ORTHO05D005063 0.0e+00 3316.2 3323 56.1
TPR.G2248 Trifolium pratense HOM05D004165 ORTHO05D005063 0.0e+00 3291.9 3324 55.4
Oeu054941.1 Olea europaea HOM05D004165 ORTHO05D005063 0.0e+00 3281.9 3110 58.1
Sc03g0004750 Simmondsia chinensis HOM05D004165 ORTHO05D005063 0.0e+00 3278.4 3334 54.9
CsaV3_6G042210 Cucumis sativus L. HOM05D004165 ORTHO05D005063 0.0e+00 3266.9 3320 54.2
Lsat_1_v5_gn_9_57180 Lactuca sativa HOM05D004165 ORTHO05D005063 0.0e+00 3254.5 3291 55.4
MELO3C007461.2 Cucumis melo HOM05D004165 ORTHO05D005063 0.0e+00 3249.1 3334 53.9
Glyma.05G185300 Glycine max HOM05D004165 ORTHO05D005063 0.0e+00 3231.4 2945 59.4
Sed0015867 Sechium edule HOM05D004165 ORTHO05D005063 0.0e+00 3205.6 3329 53.5
EL10Ac6g15255 Beta vulgaris HOM05D004165 ORTHO05D005063 0.0e+00 3194.4 3317 53.3
AT4G39420 Arabidopsis thaliana HOM05D004165 ORTHO05D005063 0.0e+00 3180.2 3308 54.1
Thhalv10024179m.g Eutrema salsugineum HOM05D004165 ORTHO05D005063 0.0e+00 3170.2 3319 53.7
THA.LOC104804480 Tarenaya hassleriana HOM05D004165 ORTHO05D005063 0.0e+00 3169.4 3316 53.4
CARHR247290 Cardamine hirsuta HOM05D004165 ORTHO05D005063 0.0e+00 3168.3 3319 53.6
ClCG01G015940 Citrullus lanatus HOM05D004165 ORTHO05D005063 0.0e+00 3166.7 3315 53.0
AL7G11450 Arabidopsis lyrata HOM05D004165 ORTHO05D005063 0.0e+00 3158.6 3303 53.9
C01p00530 Brassica napus HOM05D004165 ORTHO05D005063 0.0e+00 3158.6 3305 53.6
BolC1t00056H Brassica oleracea HOM05D004165 ORTHO05D005063 0.0e+00 3146.3 3305 53.4
A01p00380 Brassica napus HOM05D004165 ORTHO05D005063 0.0e+00 3144.4 3301 53.5
BraA01t00046Z Brassica rapa HOM05D004165 ORTHO05D005063 0.0e+00 3143.2 3304 53.5
Carub.0007s0134 Capsella rubella HOM05D004165 ORTHO05D005063 0.0e+00 3124.3 3313 53.8
SGA_v2.0_scaffold2G01283 Striga asiatica HOM05D004165 ORTHO05D005063 0.0e+00 3118.9 3051 56.8
Aa31LG6G15850 Aethionema arabicum HOM05D004165 ORTHO05D005063 0.0e+00 3096.6 3360 52.2
ATR1120G060 Amborella trichopoda HOM05D004165 ORTHO05D005063 0.0e+00 3085.4 3342 52.2
Sp7g36440 Schrenkiella parvula HOM05D004165 ORTHO05D005063 0.0e+00 3083.9 3313 52.8
DCAR_016674 Daucus carota HOM05D004165 ORTHO05D005063 0.0e+00 3031.1 2474 63.7
Nitab4.5_0000184g0120 Nicotiana tabacum HOM05D004165 ORTHO05D005063 0.0e+00 3014.2 3159 53.3
Psat7g050200 Pisum sativum HOM05D004165 ORTHO05D005063 0.0e+00 2929.4 3083 52.9
Ciclev10024679m.g Citrus clementina HOM05D004165 ORTHO05D005063 0.0e+00 2764.6 3315 49.4
QL06p031619 Quercus lobata HOM05D004165 ORTHO05D005063 0.0e+00 2744.5 2070 69.1
Zm00001eb062420 Zea mays HOM05D004165 ORTHO05D005063 0.0e+00 2640.1 3325 46.3
CDE07G1357 Ceratophyllum demersum HOM05D004165 ORTHO05D005063 0.0e+00 2436.8 2474 53.5
unitig_899.g14615 Utricularia gibba HOM05D004165 ORTHO05D005063 0.0e+00 2410.2 2618 52.8
GSVIVG01022255001 Vitis vinifera HOM05D004165 ORTHO05D005063 0.0e+00 2299.6 1644 73.2
Nitab4.5_0009050g0020 Nicotiana tabacum HOM05D004165 ORTHO05D005063 0.0e+00 2180.2 1548 73.1
Eucgr.I00310 Eucalyptus grandis HOM05D004165 ORTHO05D005063 0.0e+00 2145.9 1741 65.0
HPP92_013330 Vanilla planifolia HOM05D004165 ORTHO05D005063 0.0e+00 2135.1 2032 57.0
Mapoly0066s0021 Marchantia polymorpha HOM05D004165 ORTHO05D005063 0.0e+00 2123.6 3398 39.6
Peaxi162Scf00702g00610 Petunia axillaris HOM05D004165 ORTHO05D005063 0.0e+00 2121.3 1456 75.3
AUR62003622 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 1992.6 2478 46.9
Hma1.2p1_0134F.1_g061540 Hydrangea macrophylla HOM05D004165 ORTHO05D005063 0.0e+00 1964.1 1837 59.9
Rhsim10G0147800 Rhododendron simsii HOM05D004165 ORTHO05D005063 0.0e+00 1961.8 1447 71.5
SEGI_01323 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 0.0e+00 1936.0 2869 41.9
AUR62017931 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 1927.5 2506 45.6
Pp3c3_30110 Physcomitrium patens HOM05D004165 ORTHO05D005063 0.0e+00 1919.8 3358 38.0
Pp3c10_13600 Physcomitrium patens HOM05D004165 ORTHO05D005063 0.0e+00 1874.8 3337 36.9
Pp3c7_14700 Physcomitrium patens HOM05D004165 ORTHO05D005063 0.0e+00 1785.4 3375 36.1
Nitab4.5_0009050g0010 Nicotiana tabacum HOM05D004165 ORTHO05D005063 0.0e+00 1620.9 1726 50.7
Haze_25067 Corylus avellana HOM05D004165 ORTHO05D005063 0.0e+00 1559.7 1005 79.3
HPP92_013326 Vanilla planifolia HOM05D004165 ORTHO05D005063 0.0e+00 1397.5 2215 40.0
SMO116G0345 Selaginella moellendorffii HOM05D004165 ORTHO05D005063 0.0e+00 1270.0 1603 47.7
VMungo0251G1264 Vigna mungo HOM05D004165 ORTHO05D005063 0.0e+00 1232.6 1293 51.7
HPP92_013327 Vanilla planifolia HOM05D004165 ORTHO05D005063 0.0e+00 1232.2 1014 64.5
Haze_25068 Corylus avellana HOM05D004165 ORTHO05D005063 0.0e+00 1199.5 1019 61.7
AUR62017932 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 1198.7 842 72.3
AUR62003623 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 1139.4 836 69.9
MBI01_g36155_MAGBIO Magnolia biondii HOM05D004165 ORTHO05D005063 0.0e+00 1091.3 1552 43.2
TPR.G2291 Trifolium pratense HOM05D004165 ORTHO05D005063 1.7e-306 1057.7 1142 55.0
SEGI_35182 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 8.1e-304 1048.9 952 59.7
SEGI_21320 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 2.9e-301 1040.4 854 63.0
CBR_g5608 Chara braunii HOM05D004165 ORTHO05D005063 3.0e-298 1030.4 3369 27.7
Peaxi162Scf00702g00617 Petunia axillaris HOM05D004165 ORTHO05D005063 9.0e-295 1018.8 1295 46.0
QL06p031599 Quercus lobata HOM05D004165 ORTHO05D005063 5.5e-268 929.9 1517 40.2
TPR.G2323 Trifolium pratense HOM05D004165 ORTHO05D005063 2.5e-252 877.9 1479 37.8
COL.COLO4_22364 Corchorus olitorius HOM05D004165 ORTHO05D005063 3.6e-235 820.8 893 49.3
GSVIVG01022256001 Vitis vinifera HOM05D004165 ORTHO05D005063 3.7e-232 810.8 740 56.9
PGSC0003DMG402020957 Solanum tuberosum HOM05D004165 ORTHO05D005063 3.7e-208 731.1 441 83.7
Cpa.g.sc72.8 Carica papaya HOM05D004165 ORTHO05D005063 2.5e-204 718.4 412 87.4
Peaxi162Scf00702g00611 Petunia axillaris HOM05D004165 ORTHO05D005063 3.7e-163 581.6 442 63.3
CAN.G1044.9 Capsicum annuum HOM05D004165 ORTHO05D005063 5.9e-153 547.7 819 41.3
GSVIVG01022257001 Vitis vinifera HOM05D004165 ORTHO05D005063 2.1e-150 539.3 878 40.0
AagrBONN_evm.TU.Sc2ySwM_344.5499 Anthoceros agrestis HOM05D004165 ORTHO05D005063 6.1e-150 537.7 656 47.1
Haze_25071 Corylus avellana HOM05D004165 ORTHO05D005063 1.0e-149 537.0 818 40.8
COL.COLO4_22365 Corchorus olitorius HOM05D004165 ORTHO05D005063 1.1e-146 526.9 825 40.7
Dinv05635 Davidia involucrata HOM05D004165 ORTHO05D005063 2.4e-146 525.8 815 40.9
VMungo0251G0498 Vigna mungo HOM05D004165 ORTHO05D005063 6.1e-134 484.6 947 36.3
Os01g0182900 Oryza sativa ssp. japonica HOM05D004165 ORTHO05D005063 4.0e-133 481.9 327 74.0
CAN.G1044.6 Capsicum annuum HOM05D004165 ORTHO05D005063 1.5e-127 463.4 270 85.2
COL.COLO4_22363 Corchorus olitorius HOM05D004165 ORTHO05D005063 6.8e-125 454.5 250 89.2
DCAR_016673 Daucus carota HOM05D004165 ORTHO05D005063 1.7e-120 439.9 815 37.2
Oeu054940.1 Olea europaea HOM05D004165 ORTHO05D005063 1.9e-106 393.3 657 39.1
Cpa.g.sc72.12 Carica papaya HOM05D004165 ORTHO05D005063 1.0e-104 387.5 577 43.0
CAN.G1044.7 Capsicum annuum HOM05D004165 ORTHO05D005063 8.6e-104 384.4 415 51.8
Psat4g052480 Pisum sativum HOM05D004165 ORTHO05D005063 1.9e-103 383.3 612 43.0
Haze_25069 Corylus avellana HOM05D004165 ORTHO05D005063 8.3e-99 367.9 408 50.5
Cpa.g.sc72.10 Carica papaya HOM05D004165 ORTHO05D005063 2.4e-98 366.3 304 61.8
Psat0s5282g0080 Pisum sativum HOM05D004165 ORTHO05D005063 7.8e-97 361.3 217 86.2
Psat4g052520 Pisum sativum HOM05D004165 ORTHO05D005063 3.6e-94 352.4 332 58.7
SHI11797 Sapria himalayana HOM05D004165 ORTHO05D005063 1.8e-93 350.1 244 70.5
SHI11781 Sapria himalayana HOM05D004165 ORTHO05D005063 1.1e-87 330.9 921 30.1
SHI11786 Sapria himalayana HOM05D004165 ORTHO05D005063 2.8e-86 326.2 455 40.9
SEGI_28584 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 2.4e-82 313.2 308 56.5
Cpa.g.sc72.14 Carica papaya HOM05D004165 ORTHO05D005063 9.6e-79 301.2 251 61.0
CDE07G1151 Ceratophyllum demersum HOM05D004165 ORTHO05D005063 2.8e-78 299.7 845 29.6
SHI11791 Sapria himalayana HOM05D004165 ORTHO05D005063 2.3e-72 280.0 295 54.6
Cpa.g.sc72.15 Carica papaya HOM05D004165 ORTHO05D005063 8.7e-72 278.1 348 45.7
SHI11792 Sapria himalayana HOM05D004165 ORTHO05D005063 5.3e-69 268.9 328 46.6
SEGI_28346 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 2.6e-68 266.5 977 26.9
Cpa.g.sc72.11 Carica papaya HOM05D004165 ORTHO05D005063 7.4e-63 248.4 155 78.1
TAR629G2775 Trochodendron aralioides HOM05D004165 ORTHO05D005063 7.6e-60 238.4 825 27.8
Os01g0182832 Oryza sativa ssp. japonica HOM05D004165 ORTHO05D005063 2.5e-55 223.4 696 27.0
SHI11785 Sapria himalayana HOM05D004165 ORTHO05D005063 1.9e-50 207.2 311 39.5
AagrBONN_evm.TU.Sc2ySwM_344.5500 Anthoceros agrestis HOM05D004165 ORTHO05D005063 3.5e-49 203.0 708 27.0
SMO116G0288 Selaginella moellendorffii HOM05D004165 ORTHO05D005063 6.1e-49 202.2 390 34.1
SHI11788 Sapria himalayana HOM05D004165 ORTHO05D005063 4.5e-44 186.0 195 51.3
SHI11794 Sapria himalayana HOM05D004165 ORTHO05D005063 2.2e-35 157.1 118 67.8
PGSC0003DMG401020957 Solanum tuberosum HOM05D004165 ORTHO05D005063 2.0e-31 144.1 111 58.6
Dinv05989 Davidia involucrata HOM05D004165 ORTHO05D005063 4.4e-31 142.9 82 84.1
Psat5g190880 Pisum sativum HOM05D004165 ORTHO05D326560 5.9e-28 132.5 97 71.1
arahy.Tifrunner.gnm1.ann1.SA1CMP Arachis hypogaea HOM05D004165 ORTHO05D023735 8.5e-27 128.6 144 50.7
Dinv05988 Davidia involucrata HOM05D004165 ORTHO05D005063 6.7e-24 119.0 86 68.6
PGSC0003DMG400026832 Solanum tuberosum HOM05D004165 ORTHO05D005063 1.3e-22 114.8 93 55.9
TPR.G35587 Trifolium pratense HOM05D004165 ORTHO05D005063 3.7e-22 113.2 70 81.4
SHI11789 Sapria himalayana HOM05D004165 ORTHO05D005063 2.4e-21 110.5 109 56.0
Psat5g077040 Pisum sativum HOM05D004628 ORTHO05D005166 2.7e-20 107.1 87 69.0
Psat0ss6263g0080 Pisum sativum HOM05D004165 ORTHO05D005166 4.5e-20 106.3 149 49.0
Psat0ss6263g0240 Pisum sativum HOM05D004165 ORTHO05D005166 5.9e-20 105.9 123 55.3
Sabra16G0108800 Salix brachista HOM05D000241 ORTHO05D001001 4.2e-10 73.2 64 56.2
Lsat_1_v5_gn_1_66781 Lactuca sativa HOM05D000921 ORTHO05D002852 2.7e-09 70.5 140 33.6
SHI11793 Sapria himalayana HOM05D004165 ORTHO05D005063 3.0e-08 67.0 45 68.9
Lsat_1_v5_gn_3_81660 Lactuca sativa HOM05D000921 ORTHO05D002852 2.0e-07 64.3 60 55.0
Lsat_1_v5_gn_5_173760 Lactuca sativa HOM05D000298 ORTHO05D233122 2.6e-07 63.9 88 45.5
Cpa.g.c46795 Carica papaya HOM05D004165 ORTHO05D005063 3.4e-07 63.5 51 68.6
Lsat_1_v5_gn_3_124661 Lactuca sativa HOM05D004165 ORTHO05D232501 9.8e-07 62.0 57 57.9
Lsat_1_v5_gn_9_124480 Lactuca sativa HOM05D001159 ORTHO05D001712 1.7e-06 61.2 55 56.4


User provided reference genes

Program Settings