Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g16470 Coffea canephora HOM05D006367 ORTHO05D007942 0.0e+00 1109.7 544 100.0
Cc04_g11230 Coffea canephora HOM05D006367 ORTHO05D007942 6.0e-252 874.0 462 93.9
Manes.12G144300 Manihot esculenta HOM05D006367 ORTHO05D007942 1.5e-218 763.1 501 71.9
Thecc.01G115500 Theobroma cacao HOM05D006367 ORTHO05D007942 1.6e-217 759.6 514 71.2
Potri.005G085800 Populus trichocarpa HOM05D006367 ORTHO05D007942 1.1e-216 756.9 500 72.4
Solyc04g051610.3 Solanum lycopersicum HOM05D006367 ORTHO05D007942 2.6e-215 752.3 460 76.7
MSTRG.23307 Avicennia marina HOM05D006367 ORTHO05D007942 7.6e-215 750.7 462 77.7
FAN19G1918 Fragaria x ananassa HOM05D006367 ORTHO05D007942 7.6e-215 750.7 529 68.2
QL06p031689 Quercus lobata HOM05D006367 ORTHO05D007942 3.8e-214 748.4 466 74.0
Oeu028362.1 Olea europaea HOM05D006367 ORTHO05D007942 1.1e-213 746.9 505 71.3
TAR625G1249 Trochodendron aralioides HOM05D006367 ORTHO05D007942 1.1e-213 746.9 466 73.2
Gohir.A02G136100 Gossypium hirsutum HOM05D006367 ORTHO05D007942 2.4e-213 745.7 489 71.2
RcHm_v2.0_Chr2g0117401 Rosa chinensis HOM05D006367 ORTHO05D007942 2.4e-213 745.7 467 73.4
Duzib187G0980 Durio zibethinus HOM05D006367 ORTHO05D007942 3.2e-213 745.3 520 68.5
Sabra05G0070700 Salix brachista HOM05D006367 ORTHO05D007942 3.2e-213 745.3 502 71.3
TWI75G1400 Tripterygium wilfordii HOM05D006367 ORTHO05D007942 9.3e-213 743.8 523 68.1
Sopen04g022980 Solanum pennellii HOM05D006367 ORTHO05D007942 1.2e-212 743.4 536 68.3
COL.COLO4_10985 Corchorus olitorius HOM05D006367 ORTHO05D007942 2.1e-212 742.7 534 68.4
Nitab4.5_0009050g0050 Nicotiana tabacum HOM05D006367 ORTHO05D007942 4.6e-212 741.5 544 67.1
Gorai.003G048000 Gossypium raimondii HOM05D006367 ORTHO05D007942 6.0e-212 741.1 527 67.7
FAN26G2292 Fragaria x ananassa HOM05D006367 ORTHO05D007942 7.9e-212 740.7 528 67.8
Nitab4.5_0000184g0160 Nicotiana tabacum HOM05D006367 ORTHO05D007942 3.9e-211 738.4 557 66.1
Atru.chr7.1822 Acer truncatum HOM05D006367 ORTHO05D007942 2.5e-210 735.7 465 73.3
Ciclev10025312m.g Citrus clementina HOM05D006367 ORTHO05D007942 4.3e-210 734.9 495 69.9
Eucgr.I00312 Eucalyptus grandis HOM05D006367 ORTHO05D007942 4.3e-210 734.9 480 71.0
RcHm_v2.0_Chr2g0117461 Rosa chinensis HOM05D006367 ORTHO05D007942 5.6e-210 734.6 467 72.4
Nn5g28853 Nelumbo nucifera HOM05D006367 ORTHO05D007942 3.7e-209 731.9 553 64.9
CiPaw.04G090000 Carya illinoinensis HOM05D006367 ORTHO05D007942 4.8e-209 731.5 472 73.3
SalBow6G4439 Salvia bowleyana HOM05D006367 ORTHO05D007942 6.2e-209 731.1 470 71.7
Dinv42673 Davidia involucrata HOM05D006367 ORTHO05D007942 1.8e-208 729.6 431 78.4
FAN23G0352 Fragaria x ananassa HOM05D006367 ORTHO05D007942 2.4e-208 729.2 529 67.5
PGR004G1961 Punica granatum HOM05D006367 ORTHO05D007942 4.0e-208 728.4 516 68.8
Aqoxy6G00434 Aquilegia oxysepala HOM05D006367 ORTHO05D007942 6.9e-208 727.6 506 69.0
Prupe.6G168900 Prunus persica HOM05D006367 ORTHO05D007942 3.4e-207 725.3 500 68.8
MD10G1028700 Malus domestica HOM05D006367 ORTHO05D007942 1.3e-206 723.4 478 69.7
Migut.H02447 Erythranthe guttata HOM05D006367 ORTHO05D007942 6.5e-206 721.1 476 71.0
PSO675G5206 Papaver somniferum HOM05D006367 ORTHO05D007942 9.3e-205 717.2 486 69.1
MBI04_g33338_MAGBIO Magnolia biondii HOM05D006367 ORTHO05D007942 1.6e-204 716.5 471 70.7
VMungo0251G2542 Vigna mungo HOM05D006367 ORTHO05D007942 2.7e-204 715.7 470 69.8
CANSAT21G2601 Cannabis sativa HOM05D006367 ORTHO05D007942 3.5e-204 715.3 508 68.3
Sc14g0009250 Simmondsia chinensis HOM05D006367 ORTHO05D007942 1.0e-203 713.8 463 72.6
THA.LOC104807726 Tarenaya hassleriana HOM05D006367 ORTHO05D007942 1.0e-203 713.8 509 66.6
Haze_25063 Corylus avellana HOM05D006367 ORTHO05D007942 3.9e-203 711.8 479 70.8
arahy.Tifrunner.gnm1.ann1.511U58 Arachis hypogaea HOM05D006367 ORTHO05D007942 1.1e-202 710.3 503 66.0
AUR62040525 Chenopodium quinoa HOM05D006367 ORTHO05D007942 1.5e-202 709.9 446 73.1
arahy.Tifrunner.gnm1.ann1.GSD986 Arachis hypogaea HOM05D006367 ORTHO05D007942 2.5e-202 709.1 540 62.8
Cfa002770 Carpinus fangiana HOM05D006367 ORTHO05D007942 3.3e-202 708.8 479 70.4
SGA_v2.0_scaffold2G01287 Striga asiatica HOM05D006367 ORTHO05D007942 9.7e-202 707.2 485 68.5
BcaC02g08760 Brassica carinata HOM05D006367 ORTHO05D007942 2.8e-201 705.7 523 65.6
C04p50960 Brassica napus HOM05D006367 ORTHO05D007942 2.8e-201 705.7 523 65.6
BcaB06g27790 Brassica carinata HOM05D006367 ORTHO05D007942 1.1e-200 703.7 526 66.7
Ah.15g092040 Amaranthus hybridus HOM05D006367 ORTHO05D007942 1.8e-200 703.0 470 70.4
CSS0012231 Camellia sinensis var. sinensis HOM05D006367 ORTHO05D007942 1.2e-199 700.3 418 76.8
Sp4g00950 Schrenkiella parvula HOM05D006367 ORTHO05D007942 1.5e-199 699.9 520 65.6
Hund02300 Selenicereus undatus HOM05D006367 ORTHO05D007942 1.5e-199 699.9 454 72.0
AT2G21860 Arabidopsis thaliana HOM05D006367 ORTHO05D007942 2.6e-199 699.1 513 65.3
HanXRQChr03g0078741 Helianthus annuus HOM05D006367 ORTHO05D007942 2.6e-199 699.1 491 68.0
BraA04t17280Z Brassica rapa HOM05D006367 ORTHO05D007942 5.9e-199 698.0 525 65.1
A04p16450 Brassica napus HOM05D006367 ORTHO05D007942 3.8e-198 695.3 525 65.0
Thhalv10000126m.g Eutrema salsugineum HOM05D006367 ORTHO05D007942 6.5e-198 694.5 468 69.4
ECA240G4594 Erigeron canadensis HOM05D006367 ORTHO05D007942 1.1e-197 693.7 457 69.8
Carub.0004s0089 Capsella rubella HOM05D006367 ORTHO05D007942 3.2e-197 692.2 515 65.4
Rhsim10G0148300 Rhododendron simsii HOM05D006367 ORTHO05D007942 5.5e-197 691.4 452 72.6
AL4G11170 Arabidopsis lyrata HOM05D006367 ORTHO05D007942 1.6e-196 689.9 517 64.0
Hma1.2p1_0696F.1_g204660 Hydrangea macrophylla HOM05D006367 ORTHO05D007942 7.9e-196 687.6 436 75.0
CARHR112860 Cardamine hirsuta HOM05D006367 ORTHO05D007942 1.4e-195 686.8 468 69.2
AUR62039784 Chenopodium quinoa HOM05D006367 ORTHO05D007942 8.8e-195 684.1 471 69.0
Psat7g050440 Pisum sativum HOM05D006367 ORTHO05D007942 8.8e-195 684.1 509 64.4
Lj4g0025161 Lotus japonicus HOM05D006367 ORTHO05D007942 1.3e-193 680.2 468 66.5
RcHm_v2.0_Chr2g0117441 Rosa chinensis HOM05D006367 ORTHO05D007942 2.2e-193 679.5 421 73.9
Glyma.05G184900 Glycine max HOM05D006367 ORTHO05D007942 2.4e-192 676.0 467 67.9
CAN.G1044.2 Capsicum annuum HOM05D006367 ORTHO05D007942 3.1e-192 675.6 517 66.2
FvH4_1g22940 Fragaria vesca HOM05D006367 ORTHO05D007942 5.3e-192 674.9 421 73.9
DCAR_011462 Daucus carota HOM05D006367 ORTHO05D007942 1.5e-191 673.3 479 67.2
Lsat_1_v5_gn_5_44981 Lactuca sativa HOM05D006367 ORTHO05D007942 7.7e-191 671.0 456 68.0
Lalb_Chr07g0184731 Lupinus albus HOM05D006367 ORTHO05D007942 1.7e-190 669.8 459 67.8
Ca_17687_v3 Cicer arietinum L. HOM05D006367 ORTHO05D007942 3.8e-190 668.7 470 66.2
ClCG02G000950 Citrullus lanatus HOM05D006367 ORTHO05D007942 1.6e-188 663.3 468 67.3
Aa31LG7G14760 Aethionema arabicum HOM05D006367 ORTHO05D007942 7.9e-188 661.0 472 67.2
Os01g0716400 Oryza sativa ssp. japonica HOM05D006367 ORTHO05D007942 7.9e-188 661.0 455 67.7
Zm00001eb361490 Zea mays HOM05D006367 ORTHO05D007942 1.0e-187 660.6 476 65.1
MELO3C034581.2 Cucumis melo HOM05D006367 ORTHO05D007942 2.6e-186 656.0 468 66.0
EL10Ac7g17324 Beta vulgaris HOM05D006367 ORTHO05D007942 5.7e-186 654.8 433 69.5
TPR.G2178 Trifolium pratense HOM05D006367 ORTHO05D007942 7.4e-186 654.4 477 63.5
CARHR112850 Cardamine hirsuta HOM05D006367 ORTHO05D007942 8.2e-185 651.0 514 61.5
Medtr8g092050 Medicago truncatula HOM05D006367 ORTHO05D007942 4.1e-184 648.7 504 62.5
CsaV3_2G017740 Cucumis sativus L. HOM05D006367 ORTHO05D007942 5.3e-184 648.3 468 65.6
MELO3C020965.2 Cucumis melo HOM05D006367 ORTHO05D007942 1.9e-181 639.8 468 65.0
CDE06G2209 Ceratophyllum demersum HOM05D006367 ORTHO05D007942 9.4e-181 637.5 431 66.8
CDE04G0187 Ceratophyllum demersum HOM05D006367 ORTHO05D007942 1.6e-180 636.7 464 61.6
Lj4P863T60 Lonicera japonica HOM05D006367 ORTHO05D007942 1.0e-179 634.0 413 72.9
Actinidia05379 Actinidia chinensis HOM05D006367 ORTHO05D007942 2.3e-179 632.9 420 70.2
ATR1120G154 Amborella trichopoda HOM05D006367 ORTHO05D007942 3.9e-179 632.1 491 60.9
Sed0027379 Sechium edule HOM05D006367 ORTHO05D007942 4.5e-175 618.6 417 69.3
Gohir.D03G046900 Gossypium hirsutum HOM05D006367 ORTHO05D007942 8.5e-166 587.8 347 78.1
Nitab4.5_0005102g0010 Nicotiana tabacum HOM05D006367 ORTHO05D007942 3.6e-148 529.3 569 51.3
SMO367G0721 Selaginella moellendorffii HOM05D006367 ORTHO05D007942 3.5e-143 512.7 457 53.8
Pp3c8_810 Physcomitrium patens HOM05D006367 ORTHO05D007942 5.0e-142 508.8 485 50.9
AagrBONN_evm.TU.Sc2ySwM_344.2769 Anthoceros agrestis HOM05D006367 ORTHO05D007942 2.1e-140 503.4 445 53.7
Phvul.002G265800 Phaseolus vulgaris HOM05D006367 ORTHO05D007942 3.0e-134 483.0 372 62.6
PGSC0003DMG400020963 Solanum tuberosum HOM05D006367 ORTHO05D007942 2.6e-130 469.9 415 56.9
CBR_g8843 Chara braunii HOM05D006367 ORTHO05D007942 4.6e-127 459.1 531 43.3
Peaxi162Scf00106g01216 Petunia axillaris HOM05D006367 ORTHO05D007942 3.5e-119 433.0 479 51.6
PGSC0003DMG400023291 Solanum tuberosum HOM05D006367 ORTHO05D007942 2.0e-114 417.2 376 59.0
Eucgr.L02754 Eucalyptus grandis HOM05D006367 ORTHO05D007942 5.1e-102 375.9 317 58.7
Cre09.g388060 Chlamydomonas reinhardtii HOM05D006367 ORTHO05D007942 4.8e-100 369.4 469 43.3
PGSC0003DMG400031203 Solanum tuberosum HOM05D006367 ORTHO05D007942 8.4e-97 358.6 194 82.0
AagrBONN_evm.TU.Sc2ySwM_344.1355 Anthoceros agrestis HOM05D006367 ORTHO05D007942 8.2e-92 342.0 451 39.9
MCO11G553 Micromonas commoda HOM05D006367 ORTHO05D007942 5.5e-88 329.3 464 38.1
unitig_899.g14612 Utricularia gibba HOM05D006367 ORTHO05D007942 3.0e-86 323.6 235 67.7
Glyma.08G142950 Glycine max HOM05D006367 ORTHO05D007942 1.3e-81 308.1 186 73.7
PRCOL_00006729 Prasinoderma coloniale HOM05D006367 ORTHO05D007942 6.9e-75 285.8 451 38.1
Hma1.2p1_0696F.1_g204650 Hydrangea macrophylla HOM05D006367 ORTHO05D007942 4.5e-74 283.1 218 64.2
Aqoxy4G01385 Aquilegia oxysepala HOM05D006367 ORTHO05D007942 8.2e-68 262.3 150 77.3
Aqoxy4G01201 Aquilegia oxysepala HOM05D006367 ORTHO05D007942 1.5e-66 258.1 150 76.0
Glyma.08G142900 Glycine max HOM05D006367 ORTHO05D007942 6.5e-65 252.7 232 56.9
HPP92_027992 Vanilla planifolia HOM05D006367 ORTHO05D007942 6.5e-65 252.7 223 57.4
PGSC0003DMG400004546 Solanum tuberosum HOM05D006367 ORTHO05D007942 1.7e-44 184.9 415 32.0
GSVIVG01022252001 Vitis vinifera HOM05D006367 ORTHO05D007942 6.4e-36 156.4 140 57.1
vmacro12891 Vaccinium macrocarpon HOM05D006367 ORTHO05D007942 4.4e-21 107.1 91 61.5
Haze_08452 Corylus avellana HOM05D014029 ORTHO05D044818 3.9e-17 94.0 68 61.8
arahy.Tifrunner.gnm1.ann1.ZGZX3T Arachis hypogaea HOM05D006573 ORTHO05D008073 1.4e-14 85.5 285 24.6
Dinv19279 Davidia involucrata HOM05D006573 ORTHO05D008073 8.9e-14 82.8 311 23.5
Hma1.2p1_0696F.1_g204670 Hydrangea macrophylla HOM05D006367 ORTHO05D007942 8.9e-14 82.8 47 78.7
Glyma.19G251000 Glycine max HOM05D006573 ORTHO05D008073 1.5e-13 82.0 311 23.2
SalBow1G0293 Salvia bowleyana HOM05D006573 ORTHO05D008073 1.5e-13 82.0 281 23.5
arahy.Tifrunner.gnm1.ann1.L0KK3Q Arachis hypogaea HOM05D006573 ORTHO05D008073 2.0e-13 81.6 285 24.2
Glyma.03G253500 Glycine max HOM05D006573 ORTHO05D008073 3.4e-13 80.9 310 24.2
VMungo0540G0667 Vigna mungo HOM05D006573 ORTHO05D008073 3.4e-13 80.9 285 24.2
Ca_09476_v3 Cicer arietinum L. HOM05D006573 ORTHO05D008073 4.4e-13 80.5 283 22.3
ATR0069G016 Amborella trichopoda HOM05D006573 ORTHO05D008073 9.9e-13 79.3 306 22.2
Medtr7g116630 Medicago truncatula HOM05D006573 ORTHO05D008073 9.9e-13 79.3 287 22.6
SalBow1G2715 Salvia bowleyana HOM05D006573 ORTHO05D008073 9.9e-13 79.3 281 23.1
BolC4t26688H Brassica oleracea HOM05D002293 ORTHO05D005475 2.2e-12 78.2 115 44.3
Psat3g005000 Pisum sativum HOM05D006573 ORTHO05D008073 2.2e-12 78.2 287 23.3
TPR.G4727 Trifolium pratense HOM05D006573 ORTHO05D008073 2.2e-12 78.2 287 21.6
Haze_24492 Corylus avellana HOM05D001078 ORTHO05D000927 2.9e-12 77.8 57 71.9
Zm00001eb085840 Zea mays HOM05D006573 ORTHO05D008073 4.9e-12 77.0 269 23.0
Pp3c3_13220 Physcomitrium patens HOM05D006573 ORTHO05D008073 1.9e-11 75.1 282 24.8
Phvul.006G108200 Phaseolus vulgaris HOM05D006573 ORTHO05D008073 7.1e-11 73.2 162 26.5
SEGI_03231 Sequoiadendron giganteum HOM05D006573 ORTHO05D008073 7.1e-11 73.2 354 21.2
CBR_g38554 Chara braunii HOM05D006573 ORTHO05D008073 9.2e-11 72.8 286 22.7
Lalb_Chr18g0044221 Lupinus albus HOM05D006573 ORTHO05D008073 1.2e-10 72.4 281 21.4
MCO16G084 Micromonas commoda HOM05D006573 ORTHO05D008073 1.2e-10 72.4 275 23.3
AagrBONN_evm.TU.Sc2ySwM_228.1660 Anthoceros agrestis HOM05D006573 ORTHO05D008073 2.1e-10 71.6 270 22.6
CARHR293120 Cardamine hirsuta HOM05D006367 ORTHO05D007942 3.5e-10 70.9 89 43.8
CARHR034070 Cardamine hirsuta HOM05D006367 ORTHO05D007942 6.0e-10 70.1 129 36.4
Mapoly0111s0023 Marchantia polymorpha HOM05D006573 ORTHO05D008073 1.0e-09 69.3 275 23.6


User provided reference genes

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