Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g16120 Coffea canephora HOM05D006985 ORTHO05D008749 4.7e-112 407.9 210 100.0
Lj2A564T40 Lonicera japonica HOM05D006985 ORTHO05D008749 7.6e-62 241.1 206 64.1
CSS0005033 Camellia sinensis var. sinensis HOM05D006985 ORTHO05D008749 9.9e-62 240.7 206 64.1
TAR625G1052 Trochodendron aralioides HOM05D006985 ORTHO05D008749 2.2e-61 239.6 207 62.8
Peaxi162Scf00323g00052 Petunia axillaris HOM05D006985 ORTHO05D008749 2.9e-61 239.2 212 64.2
PGSC0003DMG400016590 Solanum tuberosum HOM05D006985 ORTHO05D008749 3.8e-61 238.8 213 64.8
CAN.G276.1 Capsicum annuum HOM05D006985 ORTHO05D008749 4.9e-61 238.4 207 62.8
Nitab4.5_0000471g0030 Nicotiana tabacum HOM05D006985 ORTHO05D008749 8.4e-61 237.7 212 65.6
Manes.12G142400 Manihot esculenta HOM05D006985 ORTHO05D008749 1.1e-60 237.3 208 62.0
Oeu028373.1 Olea europaea HOM05D006985 ORTHO05D008749 3.2e-60 235.7 205 63.9
Gohir.D03G045800 Gossypium hirsutum HOM05D006985 ORTHO05D008749 4.2e-60 235.3 208 62.5
Gorai.003G047000 Gossypium raimondii HOM05D006985 ORTHO05D008749 4.2e-60 235.3 208 62.5
QL06p032211 Quercus lobata HOM05D006985 ORTHO05D008749 1.2e-59 233.8 217 60.4
Duzib147G0418 Durio zibethinus HOM05D006985 ORTHO05D008749 1.6e-59 233.4 208 63.5
Gohir.A02G134801 Gossypium hirsutum HOM05D006985 ORTHO05D008749 1.6e-59 233.4 208 62.5
Nn5g28916 Nelumbo nucifera HOM05D006985 ORTHO05D008749 1.6e-59 233.4 209 60.3
CSS0027796 Camellia sinensis var. sinensis HOM05D006985 ORTHO05D008749 2.1e-59 233.0 206 63.1
HanXRQChr14g0446291 Helianthus annuus HOM05D006985 ORTHO05D008749 2.7e-59 232.6 215 60.9
TWI53G2009 Tripterygium wilfordii HOM05D006985 ORTHO05D008749 4.6e-59 231.9 208 62.5
Sopen04g023520 Solanum pennellii HOM05D006985 ORTHO05D008749 1.7e-58 229.9 211 62.1
Oeu030683.1 Olea europaea HOM05D006985 ORTHO05D008749 2.3e-58 229.6 211 64.0
Glyma.05G183500 Glycine max HOM05D006985 ORTHO05D008749 3.0e-58 229.2 204 60.3
ECA238G4202 Erigeron canadensis HOM05D006985 ORTHO05D008749 3.9e-58 228.8 215 60.5
GSVIVG01022222001 Vitis vinifera HOM05D006985 ORTHO05D008749 6.6e-58 228.0 185 67.6
Haze_25036 Corylus avellana HOM05D006985 ORTHO05D008749 8.7e-58 227.6 209 59.8
Solyc04g053130.4 Solanum lycopersicum HOM05D006985 ORTHO05D008749 8.7e-58 227.6 211 62.1
Thecc.01G112400 Theobroma cacao HOM05D006985 ORTHO05D008749 1.1e-57 227.3 206 61.2
Atru.chr4.358 Acer truncatum HOM05D006985 ORTHO05D008749 1.5e-57 226.9 208 59.6
Cfa002750 Carpinus fangiana HOM05D006985 ORTHO05D008749 1.5e-57 226.9 209 59.8
Sabra05G0069300 Salix brachista HOM05D006985 ORTHO05D008749 1.9e-57 226.5 211 58.3
COL.COLO4_11016 Corchorus olitorius HOM05D006985 ORTHO05D008749 3.3e-57 225.7 210 60.5
Dinv42695 Davidia involucrata HOM05D006985 ORTHO05D008749 5.6e-57 224.9 205 62.4
Potri.005G084200 Populus trichocarpa HOM05D006985 ORTHO05D008749 5.6e-57 224.9 212 59.9
CiPaw.04G092100 Carya illinoinensis HOM05D006985 ORTHO05D008749 7.3e-57 224.6 208 59.1
Lalb_Chr13g0296201 Lupinus albus HOM05D006985 ORTHO05D008749 9.6e-57 224.2 207 57.0
Rhsim10G0013600 Rhododendron simsii HOM05D006985 ORTHO05D008749 1.6e-56 223.4 211 60.7
MSTRG.23313 Avicennia marina HOM05D006985 ORTHO05D008749 3.6e-56 222.2 210 57.6
Lsat_1_v5_gn_2_67381 Lactuca sativa HOM05D006985 ORTHO05D008749 3.6e-56 222.2 209 58.4
Eucgr.I00326 Eucalyptus grandis HOM05D006985 ORTHO05D008749 6.2e-56 221.5 213 58.2
Rhsim08G0007300 Rhododendron simsii HOM05D006985 ORTHO05D008749 1.8e-55 219.9 213 60.6
SalBow6G7167 Salvia bowleyana HOM05D006985 ORTHO05D008749 2.4e-55 219.5 212 59.4
Actinidia28892 Actinidia chinensis HOM05D006985 ORTHO05D008749 3.1e-55 219.2 159 69.8
Glyma.08G141300 Glycine max HOM05D006985 ORTHO05D008749 4.0e-55 218.8 204 59.3
Rhsim08G0006600 Rhododendron simsii HOM05D006985 ORTHO05D008749 4.0e-55 218.8 211 59.7
CANSAT01G0007 Cannabis sativa HOM05D006985 ORTHO05D008749 5.3e-55 218.4 210 58.6
arahy.Tifrunner.gnm1.ann1.7DG6XK Arachis hypogaea HOM05D006985 ORTHO05D008749 6.9e-55 218.0 160 68.8
PGR004G1495 Punica granatum HOM05D006985 ORTHO05D008749 1.2e-54 217.2 212 58.5
arahy.Tifrunner.gnm1.ann1.MHK3H7 Arachis hypogaea HOM05D006985 ORTHO05D008749 1.5e-54 216.9 158 69.0
Phvul.002G264600 Phaseolus vulgaris HOM05D006985 ORTHO05D008749 4.4e-54 215.3 206 59.2
Hma1.2p1_0375F.1_g138690 Hydrangea macrophylla HOM05D006985 ORTHO05D008749 7.6e-54 214.5 204 57.8
Ciclev10026526m.g Citrus clementina HOM05D006985 ORTHO05D008749 9.9e-54 214.2 209 56.5
VMungo0251G1437 Vigna mungo HOM05D006985 ORTHO05D008749 8.4e-53 211.1 206 58.7
MELO3C007486.2 Cucumis melo HOM05D006985 ORTHO05D008749 4.2e-52 208.8 161 68.3
MD15G1333400 Malus domestica HOM05D006985 ORTHO05D008749 7.1e-52 208.0 197 59.9
CsaV3_6G042430 Cucumis sativus L. HOM05D006985 ORTHO05D008749 1.2e-51 207.2 163 67.5
Prupe.6G173300 Prunus persica HOM05D006985 ORTHO05D008749 2.1e-51 206.5 208 56.2
Duzib187G0142 Durio zibethinus HOM05D006985 ORTHO05D008749 4.6e-51 205.3 210 57.6
vmacro18630 Vaccinium macrocarpon HOM05D006985 ORTHO05D008749 4.6e-51 205.3 218 54.1
ClCG01G016160 Citrullus lanatus HOM05D006985 ORTHO05D008749 1.0e-50 204.1 210 56.7
Lj4g0016816 Lotus japonicus HOM05D006985 ORTHO05D008749 1.0e-50 204.1 211 55.9
MBI02_g45734_MAGBIO Magnolia biondii HOM05D006985 ORTHO05D008749 1.3e-50 203.8 207 55.6
FvH4_1g22220 Fragaria vesca HOM05D006985 ORTHO05D008749 2.3e-50 203.0 212 57.5
FAN23G1894 Fragaria x ananassa HOM05D006985 ORTHO05D008749 2.3e-50 203.0 212 57.5
Cpa.g.sc196.10 Carica papaya HOM05D006985 ORTHO05D008749 3.0e-50 202.6 158 68.4
Sed0020932 Sechium edule HOM05D006985 ORTHO05D008749 3.0e-50 202.6 162 66.0
DCAR_010078 Daucus carota HOM05D006985 ORTHO05D008749 5.1e-50 201.8 207 54.6
RcHm_v2.0_Chr2g0116361 Rosa chinensis HOM05D006985 ORTHO05D008749 6.6e-50 201.4 159 67.9
SGA_v2.0_scaffold51G18747 Striga asiatica HOM05D006985 ORTHO05D008749 2.5e-49 199.5 203 52.7
THA.LOC104804144 Tarenaya hassleriana HOM05D006985 ORTHO05D008749 5.6e-49 198.4 215 53.0
MBI02_g20708_MAGBIO Magnolia biondii HOM05D006985 ORTHO05D008749 9.6e-49 197.6 162 64.8
Dinv19490 Davidia involucrata HOM05D006985 ORTHO05D008749 2.8e-48 196.1 144 70.8
Ah.03g141710 Amaranthus hybridus HOM05D006985 ORTHO05D008749 6.2e-48 194.9 176 61.4
Ca_17697_v3 Cicer arietinum L. HOM05D006985 ORTHO05D008749 1.1e-47 194.1 201 53.7
Migut.H02428 Erythranthe guttata HOM05D006985 ORTHO05D008749 1.4e-47 193.7 156 64.1
Aqoxy5G01954 Aquilegia oxysepala HOM05D006985 ORTHO05D008749 2.4e-47 193.0 209 52.2
Hund03540 Selenicereus undatus HOM05D006985 ORTHO05D008749 2.4e-47 193.0 221 51.6
Psat7g051440 Pisum sativum HOM05D006985 ORTHO05D008749 5.3e-47 191.8 200 55.0
AL4G11290 Arabidopsis lyrata HOM05D006985 ORTHO05D008749 1.2e-46 190.7 215 51.6
Aqoxy7G01607 Aquilegia oxysepala HOM05D006985 ORTHO05D008749 2.6e-46 189.5 209 51.7
MSTRG.3810 Avicennia marina HOM05D006985 ORTHO05D008749 2.6e-46 189.5 148 64.9
Sp4g01050 Schrenkiella parvula HOM05D006985 ORTHO05D008749 2.6e-46 189.5 163 61.3
Aa31LG7G14690 Aethionema arabicum HOM05D006985 ORTHO05D008749 3.4e-46 189.1 174 59.8
A09p57880 Brassica napus HOM05D006985 ORTHO05D008749 3.4e-46 189.1 215 51.6
C08p41110 Brassica napus HOM05D006985 ORTHO05D008749 3.4e-46 189.1 215 51.6
BolC8t51677H Brassica oleracea HOM05D006985 ORTHO05D008749 3.4e-46 189.1 215 51.6
BraA09t41180Z Brassica rapa HOM05D006985 ORTHO05D008749 3.4e-46 189.1 215 51.6
AT2G21970 Arabidopsis thaliana HOM05D006985 ORTHO05D008749 4.5e-46 188.7 162 61.1
BcaC07g41109 Brassica carinata HOM05D006985 ORTHO05D008749 5.8e-46 188.3 162 59.9
BcaB08g35014 Brassica carinata HOM05D006985 ORTHO05D008749 7.6e-46 188.0 166 60.2
EL10Ac6g14751 Beta vulgaris HOM05D006985 ORTHO05D008749 2.2e-45 186.4 182 57.7
AUR62016276 Chenopodium quinoa HOM05D006985 ORTHO05D008749 4.9e-45 185.3 226 50.0
Sc16g0004160 Simmondsia chinensis HOM05D006985 ORTHO05D008749 6.4e-45 184.9 177 57.6
Carub.0004s0111 Capsella rubella HOM05D006985 ORTHO05D008749 1.1e-44 184.1 164 57.3
AUR62003309 Chenopodium quinoa HOM05D006985 ORTHO05D008749 4.2e-44 182.2 178 55.6
Thhalv10000325m.g Eutrema salsugineum HOM05D006985 ORTHO05D008749 2.1e-43 179.9 168 56.5
CDE02G4368 Ceratophyllum demersum HOM05D006985 ORTHO05D008749 3.0e-42 176.0 216 45.4
PSO210G1005 Papaver somniferum HOM05D006985 ORTHO05D008749 8.1e-40 167.9 219 43.8
HPP92_013077 Vanilla planifolia HOM05D006985 ORTHO05D008749 8.1e-40 167.9 157 51.6
Zm00001eb431840 Zea mays HOM05D006985 ORTHO05D008749 1.8e-39 166.8 185 49.7
Os04g0639200 Oryza sativa ssp. japonica HOM05D006985 ORTHO05D008749 1.7e-37 160.2 214 43.5
ATR0564G194 Amborella trichopoda HOM05D006985 ORTHO05D008749 4.3e-33 145.6 178 46.1
SEGI_00004 Sequoiadendron giganteum HOM05D006985 ORTHO05D008749 5.7e-33 145.2 150 46.7
PSO170G0586 Papaver somniferum HOM05D006985 ORTHO05D008749 1.5e-25 120.6 172 42.4
CARHR113060 Cardamine hirsuta HOM05D006985 ORTHO05D008749 3.3e-25 119.4 93 62.4
Hund19658 Selenicereus undatus HOM05D006985 ORTHO05D008749 3.7e-24 115.9 128 51.6
AagrBONN_evm.TU.Sc2ySwM_362.2621 Anthoceros agrestis HOM05D006985 ORTHO05D008749 8.5e-21 104.8 154 36.4
SMO356G0636 Selaginella moellendorffii HOM05D006985 ORTHO05D008749 2.0e-17 93.6 140 34.3
SMO174G0105 Selaginella moellendorffii HOM05D006985 ORTHO05D008749 7.4e-17 91.7 143 35.0
FAN26G1540 Fragaria x ananassa HOM05D000436 ORTHO05D000678 1.1e-15 87.8 116 50.9
Mapoly0007s0046 Marchantia polymorpha HOM05D006985 ORTHO05D008749 6.9e-15 85.1 144 35.4
CBR_g770 Chara braunii HOM05D006985 ORTHO05D008749 2.9e-13 79.7 140 33.6
unitig_88.g27736 Utricularia gibba HOM05D006985 ORTHO05D008749 3.8e-13 79.3 98 45.9
CARHR113050 Cardamine hirsuta HOM05D006985 ORTHO05D008749 4.2e-12 75.9 74 55.4
Pp3c16_13700 Physcomitrium patens HOM05D006985 ORTHO05D008749 1.6e-11 73.9 141 30.5
Pp3c27_3810 Physcomitrium patens HOM05D006985 ORTHO05D008749 2.1e-11 73.6 140 32.1
CDE08G1171 Ceratophyllum demersum HOM05D000290 ORTHO05D009072 3.6e-11 72.8 73 54.8


User provided reference genes

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