Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g15680 Coffea canephora HOM05D004921 ORTHO05D006008 1.3e-280 969.1 528 100.0
Actinidia36610 Actinidia chinensis HOM05D004921 ORTHO05D006008 6.7e-115 418.7 524 53.1
TAR381G0204 Trochodendron aralioides HOM05D004921 ORTHO05D006008 1.6e-113 414.1 529 51.8
Nitab4.5_0001095g0090 Nicotiana tabacum HOM05D004921 ORTHO05D006008 2.8e-113 413.3 502 51.0
Sopen04g024290 Solanum pennellii HOM05D004921 ORTHO05D006008 4.8e-113 412.5 517 50.5
Rhsim10G0156300 Rhododendron simsii HOM05D004921 ORTHO05D006008 4.0e-112 409.5 527 53.1
TAR381G1578 Trochodendron aralioides HOM05D004921 ORTHO05D006008 1.6e-108 397.5 535 50.5
MSTRG.2547 Avicennia marina HOM05D004921 ORTHO05D006008 2.6e-103 380.2 519 48.6
SGA_v2.0_scaffold51G18730 Striga asiatica HOM05D004921 ORTHO05D006008 5.8e-103 379.0 506 48.4
Lj4A880G51 Lonicera japonica HOM05D004921 ORTHO05D006008 1.7e-102 377.5 516 49.0
Migut.H02393 Erythranthe guttata HOM05D004921 ORTHO05D006008 7.9e-100 368.6 542 44.8
Eucgr.I00377 Eucalyptus grandis HOM05D004921 ORTHO05D006008 2.3e-99 367.1 525 48.4
Prupe.6G178900 Prunus persica HOM05D004921 ORTHO05D006008 1.1e-98 364.8 489 50.3
PGR004G1500 Punica granatum HOM05D004921 ORTHO05D006008 1.1e-98 364.8 517 48.4
Thecc.01G107800 Theobroma cacao HOM05D004921 ORTHO05D006008 2.2e-97 360.5 548 46.0
Gohir.A11G198900 Gossypium hirsutum HOM05D004921 ORTHO05D006008 2.8e-97 360.1 530 45.8
GSVIVG01022188001 Vitis vinifera HOM05D004921 ORTHO05D006008 3.1e-96 356.7 545 46.2
Manes.12G138700 Manihot esculenta HOM05D004921 ORTHO05D006008 9.0e-96 355.1 537 45.6
QL06p050536 Quercus lobata HOM05D004921 ORTHO05D006008 9.0e-96 355.1 542 45.8
Duzib147G0642 Durio zibethinus HOM05D004921 ORTHO05D006008 1.5e-95 354.4 522 46.4
Peaxi162Scf00204g00620 Petunia axillaris HOM05D004921 ORTHO05D006008 1.5e-95 354.4 510 45.7
Nn5g28998 Nelumbo nucifera HOM05D004921 ORTHO05D006008 1.0e-94 351.7 538 47.6
MD01G1023900 Malus domestica HOM05D004921 ORTHO05D006008 1.3e-94 351.3 523 45.9
Gohir.D11G225200 Gossypium hirsutum HOM05D004921 ORTHO05D006008 3.8e-94 349.7 565 45.1
Gorai.007G242500 Gossypium raimondii HOM05D004921 ORTHO05D006008 6.5e-94 349.0 565 45.0
Gorai.008G103200 Gossypium raimondii HOM05D004921 ORTHO05D006008 1.1e-93 348.2 524 45.2
Gohir.D12G094600 Gossypium hirsutum HOM05D004921 ORTHO05D006008 3.2e-93 346.7 524 45.0
TPR.G2186 Trifolium pratense HOM05D004921 ORTHO05D006008 3.0e-91 340.1 527 45.0
COL.COLO4_11048 Corchorus olitorius HOM05D004921 ORTHO05D006008 3.9e-91 339.7 548 44.9
Aqoxy6G00539 Aquilegia oxysepala HOM05D004921 ORTHO05D006008 1.1e-90 338.2 511 45.6
RcHm_v2.0_Chr2g0115541 Rosa chinensis HOM05D004921 ORTHO05D006008 2.0e-90 337.4 534 45.9
Duzib187G0704 Durio zibethinus HOM05D004921 ORTHO05D006008 5.7e-90 335.9 589 41.6
CiPaw.03G138100 Carya illinoinensis HOM05D004921 ORTHO05D006008 2.8e-89 333.6 380 54.7
Dinv21950 Davidia involucrata HOM05D004921 ORTHO05D006008 2.8e-89 333.6 231 79.7
HanXRQChr02g0041141 Helianthus annuus HOM05D004921 ORTHO05D006008 1.1e-88 331.6 522 45.0
MELO3C007782.2 Cucumis melo HOM05D004921 ORTHO05D006008 1.8e-88 330.9 530 44.2
Sc03g0002320 Simmondsia chinensis HOM05D004921 ORTHO05D006008 3.1e-88 330.1 528 43.9
Atru.chr4.263 Acer truncatum HOM05D004921 ORTHO05D006008 4.1e-88 329.7 521 44.3
MSTRG.23325 Avicennia marina HOM05D004921 ORTHO05D006008 4.1e-88 329.7 283 64.7
Sed0006076 Sechium edule HOM05D004921 ORTHO05D006008 2.0e-87 327.4 547 45.0
AUR62003756 Chenopodium quinoa HOM05D004921 ORTHO05D006008 3.4e-87 326.6 551 43.0
vmacro12934 Vaccinium macrocarpon HOM05D004921 ORTHO05D006008 5.9e-87 325.9 518 45.9
Potri.007G087100 Populus trichocarpa HOM05D004921 ORTHO05D006008 6.5e-86 322.4 520 44.0
THA.LOC104807708 Tarenaya hassleriana HOM05D004921 ORTHO05D006008 6.5e-86 322.4 539 44.0
Potri.005G080200 Populus trichocarpa HOM05D004921 ORTHO05D006008 8.5e-86 322.0 535 44.1
AT4G39690 Arabidopsis thaliana HOM05D004921 ORTHO05D006008 2.5e-85 320.5 559 42.6
ECA246G4277 Erigeron canadensis HOM05D004921 ORTHO05D006008 3.2e-85 320.1 523 44.9
Carub.0007s0157 Capsella rubella HOM05D004921 ORTHO05D006008 3.6e-84 316.6 490 44.5
CANSAT01G2911 Cannabis sativa HOM05D004921 ORTHO05D006008 6.1e-84 315.8 527 43.1
Lsat_1_v5_gn_5_40701 Lactuca sativa HOM05D004921 ORTHO05D006008 1.4e-83 314.7 514 43.0
CsaV3_6G045720 Cucumis sativus L. HOM05D004921 ORTHO05D006008 5.1e-83 312.8 552 42.0
TWI53G0980 Tripterygium wilfordii HOM05D004921 ORTHO05D006008 5.1e-83 312.8 552 43.3
Sp7g36200 Schrenkiella parvula HOM05D004921 ORTHO05D006008 2.0e-82 310.8 567 41.3
Lalb_Chr13g0296081 Lupinus albus HOM05D004921 ORTHO05D006008 1.3e-81 308.1 537 42.1
PSO541G2636 Papaver somniferum HOM05D004921 ORTHO05D006008 2.2e-81 307.4 385 50.9
Hma1.2p1_0070F.1_g037680 Hydrangea macrophylla HOM05D004921 ORTHO05D006008 3.7e-81 306.6 231 74.9
AUR62002041 Chenopodium quinoa HOM05D004921 ORTHO05D006008 6.3e-81 305.8 539 42.1
arahy.Tifrunner.gnm1.ann1.WRB6NJ Arachis hypogaea HOM05D004921 ORTHO05D006008 8.2e-81 305.4 516 42.6
PSO133G0077 Papaver somniferum HOM05D004921 ORTHO05D006008 8.2e-81 305.4 519 42.8
Ciclev10025222m.g Citrus clementina HOM05D004921 ORTHO05D006008 1.4e-80 304.7 517 42.4
Lj4g0017071 Lotus japonicus HOM05D004921 ORTHO05D006008 1.4e-80 304.7 587 38.8
Thhalv10024641m.g Eutrema salsugineum HOM05D004921 ORTHO05D006008 3.1e-80 303.5 540 41.1
CARHR247030 Cardamine hirsuta HOM05D004921 ORTHO05D006008 4.1e-80 303.1 557 41.1
Phvul.002G262700 Phaseolus vulgaris HOM05D004921 ORTHO05D006008 7.0e-80 302.4 538 42.2
Nitab4.5_0000518g0040 Nicotiana tabacum HOM05D004921 ORTHO05D006008 1.2e-79 301.6 432 45.6
EL10Ac6g15063 Beta vulgaris HOM05D004921 ORTHO05D006008 2.6e-79 300.4 498 44.0
Glyma.05G181700 Glycine max HOM05D004921 ORTHO05D006008 4.5e-79 299.7 540 41.3
A08p23440 Brassica napus HOM05D004921 ORTHO05D006008 1.0e-78 298.5 542 40.0
Sabra05G0065800 Salix brachista HOM05D004921 ORTHO05D006008 1.0e-78 298.5 587 39.2
ClCG01G019030 Citrullus lanatus HOM05D004921 ORTHO05D006008 6.5e-78 295.8 531 43.5
arahy.Tifrunner.gnm1.ann1.P05418 Arachis hypogaea HOM05D004921 ORTHO05D006008 1.9e-77 294.3 509 42.4
BcaB03g12266 Brassica carinata HOM05D004921 ORTHO05D006008 2.5e-77 293.9 539 40.8
Lalb_Chr07g0184941 Lupinus albus HOM05D004921 ORTHO05D006008 4.2e-77 293.1 528 41.1
VMungo0251G2130 Vigna mungo HOM05D004921 ORTHO05D006008 7.2e-77 292.4 527 42.1
C03p78130 Brassica napus HOM05D004921 ORTHO05D006008 2.1e-76 290.8 542 40.4
BraA08t34298Z Brassica rapa HOM05D004921 ORTHO05D006008 2.1e-76 290.8 489 42.1
BcaC01g00311 Brassica carinata HOM05D004921 ORTHO05D006008 3.6e-76 290.0 485 42.9
BolC3t20076H Brassica oleracea HOM05D004921 ORTHO05D006008 6.1e-76 289.3 485 42.5
AL7G11890 Arabidopsis lyrata HOM05D004921 ORTHO05D006008 3.0e-75 287.0 504 42.5
Medtr8g091480 Medicago truncatula HOM05D004921 ORTHO05D006008 2.0e-74 284.3 537 39.1
ATR0661G561 Amborella trichopoda HOM05D004921 ORTHO05D006008 8.2e-73 278.9 492 42.7
Gohir.A12G091122 Gossypium hirsutum HOM05D004921 ORTHO05D006008 1.4e-72 278.1 550 39.5
Psat7g053360 Pisum sativum HOM05D004921 ORTHO05D006008 1.4e-72 278.1 530 39.1
Hund13647 Selenicereus undatus HOM05D004921 ORTHO05D006008 3.1e-72 276.9 514 40.3
Haze_24997 Corylus avellana HOM05D004921 ORTHO05D006008 5.3e-72 276.2 556 38.5
Glyma.08G139400 Glycine max HOM05D004921 ORTHO05D006008 5.0e-70 269.6 534 39.3
MD15G1329400 Malus domestica HOM05D004921 ORTHO05D006008 4.2e-69 266.5 261 60.2
HPP92_016473 Vanilla planifolia HOM05D004921 ORTHO05D006008 6.8e-67 259.2 288 53.5
HPP92_027138 Vanilla planifolia HOM05D004921 ORTHO05D006008 3.4e-66 256.9 271 56.1
Aa31LG6G15580 Aethionema arabicum HOM05D004921 ORTHO05D006008 4.1e-64 250.0 532 37.4
Ah.03g142660 Amaranthus hybridus HOM05D004921 ORTHO05D006008 7.0e-64 249.2 497 42.3
FAN19G2080 Fragaria x ananassa HOM05D004921 ORTHO05D006008 9.1e-64 248.8 530 39.4
FAN26G3332 Fragaria x ananassa HOM05D004921 ORTHO05D006008 1.2e-63 248.4 475 41.5
FAN26G3387 Fragaria x ananassa HOM05D004921 ORTHO05D006008 1.2e-63 248.4 475 41.5
CDE04G0927 Ceratophyllum demersum HOM05D004921 ORTHO05D006008 2.0e-63 247.7 470 41.3
FAN28G0310 Fragaria x ananassa HOM05D004921 ORTHO05D006008 1.0e-62 245.4 445 42.5
FAN23G2445 Fragaria x ananassa HOM05D004921 ORTHO05D006008 6.5e-62 242.7 478 41.2
Zm00001eb431730 Zea mays HOM05D004921 ORTHO05D006008 4.2e-61 240.0 522 37.4
FvH4_1g21670 Fragaria vesca HOM05D004921 ORTHO05D006008 3.6e-60 236.9 532 39.1
SEGI_07937 Sequoiadendron giganteum HOM05D004921 ORTHO05D006008 3.0e-59 233.8 224 60.7
Hma1.2p1_0070F.1_g037670 Hydrangea macrophylla HOM05D004921 ORTHO05D006008 1.2e-58 231.9 426 43.2
SEGI_00052 Sequoiadendron giganteum HOM05D004921 ORTHO05D006008 1.2e-58 231.9 225 59.6
MBI05_g00773_MAGBIO Magnolia biondii HOM05D004921 ORTHO05D006008 5.7e-58 229.6 533 36.6
DCAR_001020 Daucus carota HOM05D004921 ORTHO05D006008 5.4e-56 223.0 515 36.3
unitig_0.g2479 Utricularia gibba HOM05D004921 ORTHO05D006008 1.7e-54 218.0 490 37.8
CDE06G0766 Ceratophyllum demersum HOM05D004921 ORTHO05D006008 2.5e-53 214.2 412 41.3
A01p00580 Brassica napus HOM05D004921 ORTHO05D006008 8.3e-41 172.6 160 61.2
CSS0005403 Camellia sinensis var. sinensis HOM05D004921 ORTHO05D006008 4.4e-34 150.2 331 39.9
Zm00001eb069160 Zea mays HOM05D004921 ORTHO05D006008 1.3e-33 148.7 427 32.6
Dinv04895 Davidia involucrata HOM05D004921 ORTHO05D006008 1.1e-32 145.6 141 63.8
Cpa.g.sc82.56 Carica papaya HOM05D004921 ORTHO05D006008 3.5e-31 140.6 89 76.4
Dinv32118 Davidia involucrata HOM05D004921 ORTHO05D006008 2.3e-30 137.9 141 61.0
Dinv40591 Davidia involucrata HOM05D004921 ORTHO05D006008 2.3e-30 137.9 140 62.1
BraA01t00066Z Brassica rapa HOM05D004921 ORTHO05D006008 4.0e-27 127.1 86 74.4
C01p00710 Brassica napus HOM05D004921 ORTHO05D006008 5.2e-27 126.7 87 77.0
BolC1t00074H Brassica oleracea HOM05D004921 ORTHO05D006008 5.2e-27 126.7 87 77.0
Sabra07G0072000 Salix brachista HOM05D004921 ORTHO05D006008 3.4e-26 124.0 343 32.7
Pp3c3_27510 Physcomitrium patens HOM05D004921 ORTHO05D006008 2.2e-25 121.3 213 39.0
SMO174G0199 Selaginella moellendorffii HOM05D004921 ORTHO05D006008 3.0e-22 110.9 374 28.1
MBI05_g36740_MAGBIO Magnolia biondii HOM05D004921 ORTHO05D006008 3.9e-22 110.5 112 58.0
AagrBONN_evm.TU.Sc2ySwM_344.1023 Anthoceros agrestis HOM05D004921 ORTHO05D006008 4.3e-21 107.1 420 30.0
Mapoly0001s0396 Marchantia polymorpha HOM05D004921 ORTHO05D006008 3.6e-20 104.0 458 27.7
Os04g0636600 Oryza sativa ssp. japonica HOM05D004921 ORTHO05D006008 8.9e-19 99.4 356 29.2
Cpa.g.sc82.54 Carica papaya HOM05D004921 ORTHO05D006008 9.9e-18 95.9 82 64.6
BcaNung00891 Brassica carinata HOM05D004921 ORTHO05D006008 1.9e-16 91.7 65 70.8
Dinv21952 Davidia involucrata HOM05D004921 ORTHO05D006008 9.6e-13 79.3 130 44.6
BcaNung05547 Brassica carinata HOM05D004921 ORTHO05D006008 2.8e-12 77.8 113 46.0
CBR_g51480 Chara braunii HOM05D004921 ORTHO05D006008 4.8e-12 77.0 404 27.2
Dinv16320 Davidia involucrata HOM05D004921 ORTHO05D006008 4.8e-12 77.0 45 84.4
COL.COLO4_35617 Corchorus olitorius HOM05D004921 ORTHO05D006008 2.9e-09 67.8 43 76.7
Dinv21951 Davidia involucrata HOM05D004921 ORTHO05D006008 3.0e-06 57.8 113 38.1


User provided reference genes

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