Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g15400 Coffea canephora HOM05D005306 ORTHO05D006158 2.5e-195 685.3 343 100.0
Actinidia36600 Actinidia chinensis HOM05D005306 ORTHO05D006158 6.8e-76 288.5 366 46.2
CSS0034809 Camellia sinensis var. sinensis HOM05D005306 ORTHO05D006158 5.9e-72 275.4 379 44.6
Dinv16302 Davidia involucrata HOM05D005306 ORTHO05D006158 8.5e-71 271.6 352 48.0
Dinv21926 Davidia involucrata HOM05D005306 ORTHO05D006158 4.2e-70 269.2 375 44.5
Lj4A885T20 Lonicera japonica HOM05D005306 ORTHO05D006158 2.3e-68 263.5 359 46.0
Oeu032161.1 Olea europaea HOM05D005306 ORTHO05D006158 1.8e-65 253.8 375 43.7
Oeu032163.1 Olea europaea HOM05D005306 ORTHO05D006158 1.8e-65 253.8 375 43.7
Sopen04g024710 Solanum pennellii HOM05D005306 ORTHO05D006158 6.6e-63 245.4 348 45.7
PGSC0003DMG400020626 Solanum tuberosum HOM05D005306 ORTHO05D006158 1.1e-62 244.6 349 43.8
Solyc04g054900.3 Solanum lycopersicum HOM05D005306 ORTHO05D006158 2.5e-62 243.4 348 44.5
Peaxi162Scf00422g00025 Petunia axillaris HOM05D005306 ORTHO05D006158 1.2e-59 234.6 356 42.7
Ciclev10025982m.g Citrus clementina HOM05D005306 ORTHO05D006158 1.3e-58 231.1 359 41.2
Nitab4.5_0000104g0330 Nicotiana tabacum HOM05D005306 ORTHO05D006158 1.1e-57 228.0 316 47.8
Nitab4.5_0004120g0030 Nicotiana tabacum HOM05D005306 ORTHO05D006158 1.8e-57 227.3 320 46.2
TAR625G0717 Trochodendron aralioides HOM05D005306 ORTHO05D006158 3.5e-56 223.0 384 40.1
Migut.H02371 Erythranthe guttata HOM05D005306 ORTHO05D006158 4.5e-56 222.6 423 37.1
QL06p049976 Quercus lobata HOM05D005306 ORTHO05D006158 1.2e-53 214.5 373 38.6
Cfa002685 Carpinus fangiana HOM05D005306 ORTHO05D006158 1.6e-53 214.2 385 36.9
vmacro12947 Vaccinium macrocarpon HOM05D005306 ORTHO05D006158 1.0e-52 211.5 341 40.2
CAN.G113.1 Capsicum annuum HOM05D005306 ORTHO05D006158 6.8e-52 208.8 366 39.6
Atru.chr4.126 Acer truncatum HOM05D005306 ORTHO05D006158 2.0e-51 207.2 355 40.3
QL04p017893 Quercus lobata HOM05D005306 ORTHO05D006158 3.4e-51 206.5 374 38.5
SalBow3G4455 Salvia bowleyana HOM05D005306 ORTHO05D006158 5.8e-51 205.7 465 33.3
Haze_24956 Corylus avellana HOM05D005306 ORTHO05D006158 1.3e-50 204.5 389 35.0
Manes.12G136900 Manihot esculenta HOM05D005306 ORTHO05D006158 1.3e-50 204.5 384 38.0
Thecc.01G104400 Theobroma cacao HOM05D005306 ORTHO05D006158 1.7e-50 204.1 343 39.7
CiPaw.04G097600 Carya illinoinensis HOM05D005306 ORTHO05D006158 1.1e-49 201.4 368 36.7
CiPaw.03G140300 Carya illinoinensis HOM05D005306 ORTHO05D006158 4.1e-49 199.5 319 39.8
GSVIVG01004251001 Vitis vinifera HOM05D005306 ORTHO05D006158 1.6e-48 197.6 307 42.7
Potri.007G090500 Populus trichocarpa HOM05D005306 ORTHO05D006158 7.8e-48 195.3 359 39.3
TWI77G0207 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 8.6e-47 191.8 370 37.8
Duzib147G0288 Durio zibethinus HOM05D005306 ORTHO05D006158 1.5e-46 191.0 173 56.1
TAR381G0610 Trochodendron aralioides HOM05D005306 ORTHO05D006158 3.3e-46 189.9 379 35.6
TWI53G1353 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 1.2e-45 188.0 357 37.8
DCAR_014236 Daucus carota HOM05D005306 ORTHO05D006158 2.8e-45 186.8 326 42.9
Gohir.A11G052900 Gossypium hirsutum HOM05D005306 ORTHO05D006158 2.8e-45 186.8 337 40.7
MSTRG.2558 Avicennia marina HOM05D005306 ORTHO05D006158 8.0e-45 185.3 265 43.8
Gohir.D12G096600 Gossypium hirsutum HOM05D005306 ORTHO05D006158 1.8e-44 184.1 343 37.3
Gorai.008G104700 Gossypium raimondii HOM05D005306 ORTHO05D006158 1.8e-44 184.1 343 37.3
Gohir.A12G079125 Gossypium hirsutum HOM05D005306 ORTHO05D006158 5.2e-44 182.6 343 37.3
Sabra07G0074200 Salix brachista HOM05D005306 ORTHO05D006158 8.9e-44 181.8 352 37.2
MSTRG.23333 Avicennia marina HOM05D005306 ORTHO05D006158 1.2e-43 181.4 296 41.2
ClCG01G018910 Citrullus lanatus HOM05D005306 ORTHO05D006158 1.2e-43 181.4 359 36.8
Cpa.g.sc20.237 Carica papaya HOM05D005306 ORTHO05D006158 5.8e-43 179.1 369 36.6
SGA_v2.0_scaffold47G17761 Striga asiatica HOM05D005306 ORTHO05D006158 3.7e-42 176.4 419 33.9
Potri.005G077400 Populus trichocarpa HOM05D005306 ORTHO05D006158 4.9e-42 176.0 351 36.5
COL.COLO4_09939 Corchorus olitorius HOM05D005306 ORTHO05D006158 5.4e-41 172.6 339 37.2
Gorai.007G061500 Gossypium raimondii HOM05D005306 ORTHO05D006158 9.2e-41 171.8 195 51.3
Sed0001570 Sechium edule HOM05D005306 ORTHO05D006158 1.6e-40 171.0 367 34.9
Lsat_1_v5_gn_4_141700 Lactuca sativa HOM05D005306 ORTHO05D006158 2.1e-40 170.6 333 38.1
Nn1g05302 Nelumbo nucifera HOM05D005306 ORTHO05D006158 3.9e-39 166.4 382 33.8
CsaV3_6G045590 Cucumis sativus L. HOM05D005306 ORTHO05D006158 6.6e-39 165.6 195 49.7
AUR62002025 Chenopodium quinoa HOM05D005306 ORTHO05D006158 2.5e-38 163.7 374 33.7
MELO3C007770.2 Cucumis melo HOM05D005306 ORTHO05D006158 2.5e-38 163.7 194 49.0
Prupe.6G182000 Prunus persica HOM05D005306 ORTHO05D006158 3.3e-38 163.3 384 35.4
Aqoxy6G00585 Aquilegia oxysepala HOM05D005306 ORTHO05D006158 5.6e-38 162.5 362 35.6
ECA232G0837 Erigeron canadensis HOM05D005306 ORTHO05D006158 2.1e-37 160.6 214 45.8
Nn5g29063 Nelumbo nucifera HOM05D005306 ORTHO05D006158 2.1e-37 160.6 362 34.8
HanXRQChr15g0484181 Helianthus annuus HOM05D005306 ORTHO05D006158 2.8e-37 160.2 376 33.8
PSO210G6319 Papaver somniferum HOM05D005306 ORTHO05D006158 4.0e-36 156.4 170 47.1
AUR62003775 Chenopodium quinoa HOM05D005306 ORTHO05D006158 8.9e-36 155.2 381 33.3
Lsat_1_v5_gn_5_43440 Lactuca sativa HOM05D005306 ORTHO05D006158 2.6e-35 153.7 319 36.7
MD01G1027000 Malus domestica HOM05D005306 ORTHO05D006158 1.7e-34 151.0 381 33.3
MD15G1327000 Malus domestica HOM05D005306 ORTHO05D006158 8.3e-34 148.7 380 32.6
Gohir.D11G056300 Gossypium hirsutum HOM05D005306 ORTHO05D006158 1.1e-33 148.3 171 51.5
Eucgr.H04811 Eucalyptus grandis HOM05D005306 ORTHO05D006158 1.9e-33 147.5 173 45.7
THA.LOC104819305 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 2.4e-33 147.1 357 33.3
RcHm_v2.0_Chr2g0115081 Rosa chinensis HOM05D005306 ORTHO05D006158 3.2e-33 146.7 361 33.5
Aa31LG1G16850 Aethionema arabicum HOM05D005306 ORTHO05D006158 7.1e-33 145.6 329 35.6
FAN28G0785 Fragaria x ananassa HOM05D005306 ORTHO05D006158 2.1e-32 144.1 370 34.3
Hund13638 Selenicereus undatus HOM05D005306 ORTHO05D006158 2.7e-32 143.7 214 40.2
FAN23G1139 Fragaria x ananassa HOM05D005306 ORTHO05D006158 4.6e-32 142.9 360 33.9
FAN26G1901 Fragaria x ananassa HOM05D005306 ORTHO05D006158 4.6e-32 142.9 356 34.3
Ah.02g122180 Amaranthus hybridus HOM05D005306 ORTHO05D006158 1.3e-31 141.4 349 33.5
Sp6g33290 Schrenkiella parvula HOM05D005306 ORTHO05D006158 1.3e-31 141.4 204 41.7
arahy.Tifrunner.gnm1.ann1.U0X1YR Arachis hypogaea HOM05D005306 ORTHO05D006158 3.9e-31 139.8 183 43.2
arahy.Tifrunner.gnm1.ann1.H9PZRL Arachis hypogaea HOM05D005306 ORTHO05D006158 8.6e-31 138.7 183 43.2
EL10Ac6g15084 Beta vulgaris HOM05D005306 ORTHO05D006158 8.6e-31 138.7 375 34.7
FvH4_1g21240 Fragaria vesca HOM05D005306 ORTHO05D006158 1.1e-30 138.3 359 33.4
Lalb_Chr13g0296051 Lupinus albus HOM05D005306 ORTHO05D006158 1.9e-30 137.5 151 47.7
Phvul.002G254400 Phaseolus vulgaris HOM05D005306 ORTHO05D006158 3.3e-30 136.7 350 32.9
THA.LOC104818490 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 5.6e-30 136.0 332 33.4
Lj4g0005197 Lotus japonicus HOM05D005306 ORTHO05D006158 1.2e-29 134.8 343 34.4
BraA06t26127Z Brassica rapa HOM05D005306 ORTHO05D006158 1.6e-29 134.4 142 46.5
Psat7g054080 Pisum sativum HOM05D005306 ORTHO05D006158 2.1e-29 134.0 345 33.0
Thhalv10004547m.g Eutrema salsugineum HOM05D005306 ORTHO05D006158 2.8e-29 133.7 244 35.2
Medtr8g090365 Medicago truncatula HOM05D005306 ORTHO05D006158 2.8e-29 133.7 205 42.9
Ca_17725_v3 Cicer arietinum L. HOM05D005306 ORTHO05D006158 6.2e-29 132.5 347 31.4
BraA03t09786Z Brassica rapa HOM05D005306 ORTHO05D006158 8.1e-29 132.1 163 47.2
CANSAT01G2249 Cannabis sativa HOM05D005306 ORTHO05D006158 8.1e-29 132.1 202 41.1
Thhalv10014214m.g Eutrema salsugineum HOM05D005306 ORTHO05D006158 1.8e-28 131.0 142 47.2
Lalb_Chr07g0185101 Lupinus albus HOM05D005306 ORTHO05D006158 1.8e-28 131.0 356 30.1
VMungo0251G2777 Vigna mungo HOM05D005306 ORTHO05D006158 6.8e-28 129.0 277 32.1
C03p04880 Brassica napus HOM05D005306 ORTHO05D006158 8.9e-28 128.6 226 40.7
BolC3t13020H Brassica oleracea HOM05D005306 ORTHO05D006158 8.9e-28 128.6 226 40.7
CARHR203180 Cardamine hirsuta HOM05D005306 ORTHO05D006158 8.9e-28 128.6 159 44.7
BcaC01g02741 Brassica carinata HOM05D005306 ORTHO05D006158 1.2e-27 128.3 189 38.6
C03p61010 Brassica napus HOM05D005306 ORTHO05D006158 1.2e-27 128.3 189 38.6
BolC3t18363H Brassica oleracea HOM05D005306 ORTHO05D006158 1.2e-27 128.3 189 38.6
Carub.0008s2596 Capsella rubella HOM05D005306 ORTHO05D006158 2.6e-27 127.1 214 40.2
PGR102G1853 Punica granatum HOM05D005306 ORTHO05D006158 3.4e-27 126.7 330 31.5
A06p31940 Brassica napus HOM05D005306 ORTHO05D006158 4.4e-27 126.3 189 38.6
BcaB02g09863 Brassica carinata HOM05D005306 ORTHO05D006158 1.3e-26 124.8 200 40.0
AL8G42620 Arabidopsis lyrata HOM05D005306 ORTHO05D006158 2.2e-26 124.0 321 34.0
A03p04410 Brassica napus HOM05D005306 ORTHO05D006158 2.2e-26 124.0 226 40.3
Sed0017418 Sechium edule HOM05D005306 ORTHO05D006158 2.9e-26 123.6 155 47.1
Carub.0006s0857 Capsella rubella HOM05D005306 ORTHO05D006158 8.4e-26 122.1 142 45.8
Sp2g28200 Schrenkiella parvula HOM05D005306 ORTHO05D006158 8.4e-26 122.1 246 35.0
AT5G65120 Arabidopsis thaliana HOM05D005306 ORTHO05D006158 1.4e-25 121.3 313 33.5
TPR.G2173 Trifolium pratense HOM05D005306 ORTHO05D006158 3.2e-25 120.2 200 37.5
AT5G10110 Arabidopsis thaliana HOM05D005306 ORTHO05D006158 1.6e-24 117.9 338 30.5
TWI74G0266 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 2.1e-24 117.5 164 43.3
FAN19G0499 Fragaria x ananassa HOM05D005306 ORTHO05D006158 2.7e-24 117.1 330 33.0
AL6G20570 Arabidopsis lyrata HOM05D005306 ORTHO05D006158 4.6e-24 116.3 142 42.3
unitig_27.g25362 Utricularia gibba HOM05D033148 ORTHO05D006158 4.3e-22 109.8 321 29.9
CARHR279030 Cardamine hirsuta HOM05D005306 ORTHO05D006158 5.6e-22 109.4 181 41.4
BcaB04g20004 Brassica carinata HOM05D005306 ORTHO05D006158 2.8e-21 107.1 118 45.8
Ah.03g142470 Amaranthus hybridus HOM05D005306 ORTHO05D006158 3.6e-21 106.7 278 34.9
MBI05_g34472_MAGBIO Magnolia biondii HOM05D005306 ORTHO05D006158 1.1e-20 105.1 182 34.1
BraA09t36544Z Brassica rapa HOM05D005306 ORTHO05D006158 5.3e-20 102.8 112 44.6
Sc16g0005560 Simmondsia chinensis HOM05D005306 ORTHO05D006158 4.4e-19 99.8 253 31.2
C09p10370 Brassica napus HOM05D005306 ORTHO05D006158 1.3e-18 98.2 198 35.9
BolC9t53937H Brassica oleracea HOM05D005306 ORTHO05D006158 1.3e-18 98.2 198 35.9
PSO447G0179 Papaver somniferum HOM05D005306 ORTHO05D006158 2.2e-18 97.4 170 34.1
BcaC04g23269 Brassica carinata HOM05D005306 ORTHO05D006158 3.2e-17 93.6 241 31.5
Os02g0752300 Oryza sativa ssp. japonica HOM05D005306 ORTHO05D006158 1.2e-16 91.7 346 28.3
Aa31LG3G17030 Aethionema arabicum HOM05D005306 ORTHO05D006158 2.1e-16 90.9 171 35.1
Zm00001eb194230 Zea mays HOM05D005306 ORTHO05D006158 2.1e-16 90.9 365 26.3
Glyma.08G137700 Glycine max HOM05D005306 ORTHO05D006158 4.6e-16 89.7 343 27.4
SGA_v2.0_scaffold34G13602 Striga asiatica HOM05D005306 ORTHO05D006158 8.7e-15 85.5 408 27.9
Lj2C552G1 Lonicera japonica HOM05D005306 ORTHO05D006158 1.3e-13 81.6 202 34.7
A09p08930 Brassica napus HOM05D005306 ORTHO05D006158 4.8e-13 79.7 177 35.0
THA.LOC104801720 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 1.1e-12 78.6 264 30.3
ATR0564G355 Amborella trichopoda HOM05D005306 ORTHO05D006158 9.0e-12 75.5 151 31.8
CDE10G0726 Ceratophyllum demersum HOM05D005306 ORTHO05D006158 4.9e-10 69.7 159 30.8
Hund16271 Selenicereus undatus HOM05D005306 ORTHO05D006158 1.1e-09 68.6 366 27.0
Glyma.05G180000 Glycine max HOM05D005306 ORTHO05D006158 1.9e-09 67.8 325 25.2
SEGI_16914 Sequoiadendron giganteum HOM05D003400 ORTHO05D003687 3.2e-09 67.0 133 33.1
unitig_699.g19586 Utricularia gibba HOM05D033148 ORTHO05D006158 1.2e-08 65.1 268 29.1
HPP92_004303 Vanilla planifolia HOM05D005306 ORTHO05D006158 1.6e-08 64.7 104 34.6
BcaB02g09865 Brassica carinata HOM05D005306 ORTHO05D006158 7.9e-08 62.4 80 42.5
CDE10G0861 Ceratophyllum demersum HOM05D005306 ORTHO05D006158 5.6e-06 56.2 127 33.1
AagrBONN_evm.TU.Sc2ySwM_344.4066 Anthoceros agrestis HOM05D003400 ORTHO05D003687 7.4e-06 55.8 133 28.6


User provided reference genes

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