Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g15020 Coffea canephora HOM05D005302 ORTHO05D006422 2.9e-176 621.7 293 100.0
Cc08_g09240 Coffea canephora HOM05D005302 ORTHO05D006422 6.2e-163 577.4 269 99.6
Hma1.2p1_0393F.1_g143080 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 1.1e-138 496.9 267 82.4
Dinv14245 Davidia involucrata HOM05D005302 ORTHO05D006422 1.4e-138 496.5 266 81.6
Actinidia13324 Actinidia chinensis HOM05D005302 ORTHO05D006422 1.5e-137 493.0 267 81.6
Atru.chr7.2133 Acer truncatum HOM05D005302 ORTHO05D006422 2.0e-137 492.7 269 81.8
TWI34G0390 Tripterygium wilfordii HOM05D005302 ORTHO05D006422 3.4e-137 491.9 269 79.6
TAR624G0168 Trochodendron aralioides HOM05D005302 ORTHO05D006422 4.5e-137 491.5 268 81.7
CiPaw.08G024700 Carya illinoinensis HOM05D005302 ORTHO05D006422 1.9e-135 486.1 268 79.1
Cfa013356 Carpinus fangiana HOM05D005302 ORTHO05D006422 2.5e-135 485.7 268 78.7
Cfa013357 Carpinus fangiana HOM05D005302 ORTHO05D006422 2.1e-134 482.6 268 78.7
CiPaw.07G205300 Carya illinoinensis HOM05D005302 ORTHO05D006422 2.7e-134 482.3 268 79.9
Glyma.04G082500 Glycine max HOM05D005302 ORTHO05D006422 2.7e-134 482.3 269 79.2
MD15G1095400 Malus domestica HOM05D005302 ORTHO05D006422 2.7e-134 482.3 269 80.3
Glyma.06G084100 Glycine max HOM05D005302 ORTHO05D006422 7.9e-134 480.7 269 78.1
Nn2g11666 Nelumbo nucifera HOM05D005302 ORTHO05D006422 1.4e-133 479.9 269 78.4
ECA246G0277 Erigeron canadensis HOM05D005302 ORTHO05D006422 2.3e-133 479.2 270 77.4
Eucgr.C02909 Eucalyptus grandis HOM05D005302 ORTHO05D006422 8.8e-133 477.2 269 78.1
GSVIVG01035645001 Vitis vinifera HOM05D005302 ORTHO05D006422 8.8e-133 477.2 268 78.0
CANSAT25G0630 Cannabis sativa HOM05D005302 ORTHO05D006422 1.5e-132 476.5 269 78.8
Prupe.1G450300 Prunus persica HOM05D005302 ORTHO05D006422 2.0e-132 476.1 269 78.8
Medtr3g110160 Medicago truncatula HOM05D005302 ORTHO05D006422 3.3e-132 475.3 269 78.8
CSS0024291 Camellia sinensis var. sinensis HOM05D005302 ORTHO05D006422 5.7e-132 474.6 267 78.3
CSS0027627 Camellia sinensis var. sinensis HOM05D005302 ORTHO05D006422 5.7e-132 474.6 267 78.3
Rhsim02G0179400 Rhododendron simsii HOM05D005302 ORTHO05D006422 5.7e-132 474.6 267 79.4
Lsat_1_v5_gn_5_33600 Lactuca sativa HOM05D005302 ORTHO05D006422 9.7e-132 473.8 267 77.9
RcHm_v2.0_Chr6g0306001 Rosa chinensis HOM05D005302 ORTHO05D006422 9.7e-132 473.8 270 78.1
FvH4_2g35770 Fragaria vesca HOM05D005302 ORTHO05D006422 1.7e-131 473.0 269 77.3
Aqoxy7G03804 Aquilegia oxysepala HOM05D005302 ORTHO05D006422 2.8e-131 472.2 270 77.8
MSTRG.11705 Avicennia marina HOM05D005302 ORTHO05D006422 2.8e-131 472.2 270 76.3
Ca_15604_v3 Cicer arietinum L. HOM05D005302 ORTHO05D006422 2.8e-131 472.2 269 78.1
MD08G1115600 Malus domestica HOM05D005302 ORTHO05D006422 6.3e-131 471.1 269 77.3
PGR044G1364 Punica granatum HOM05D005302 ORTHO05D006422 6.3e-131 471.1 269 74.7
Migut.A00220 Erythranthe guttata HOM05D005302 ORTHO05D006422 2.4e-130 469.2 270 74.8
Potri.018G040200 Populus trichocarpa HOM05D005302 ORTHO05D006422 2.4e-130 469.2 269 76.6
HanXRQChr08g0236291 Helianthus annuus HOM05D005302 ORTHO05D006422 3.1e-130 468.8 272 76.5
COL.COLO4_18671 Corchorus olitorius HOM05D005302 ORTHO05D006422 5.3e-130 468.0 271 76.8
Ciclev10008169m.g Citrus clementina HOM05D005302 ORTHO05D006422 9.1e-130 467.2 270 76.7
arahy.Tifrunner.gnm1.ann1.P7Z4SB Arachis hypogaea HOM05D005302 ORTHO05D006422 1.5e-129 466.5 269 77.3
MELO3C011150.2 Cucumis melo HOM05D005302 ORTHO05D006422 2.6e-129 465.7 269 75.1
CsaV3_2G030970 Cucumis sativus L. HOM05D005302 ORTHO05D006422 3.4e-129 465.3 269 74.7
Gorai.009G050600 Gossypium raimondii HOM05D005302 ORTHO05D006422 4.5e-129 464.9 270 74.8
arahy.Tifrunner.gnm1.ann1.R6A5BY Arachis hypogaea HOM05D005302 ORTHO05D006422 5.9e-129 464.5 269 77.0
Duzib150G0232 Durio zibethinus HOM05D005302 ORTHO05D006422 5.9e-129 464.5 270 74.1
QL12p029391 Quercus lobata HOM05D005302 ORTHO05D006422 1.3e-128 463.4 268 76.5
SGA_v2.0_scaffold103G29944 Striga asiatica HOM05D005302 ORTHO05D006422 1.3e-128 463.4 270 75.6
DCAR_003119 Daucus carota HOM05D005302 ORTHO05D006422 1.7e-128 463.0 281 74.7
Gohir.D05G049300 Gossypium hirsutum HOM05D005302 ORTHO05D006422 1.7e-128 463.0 270 74.4
Thecc.09G042800 Theobroma cacao HOM05D005302 ORTHO05D006422 1.7e-128 463.0 267 75.3
Psat5g022320 Pisum sativum HOM05D005302 ORTHO05D006422 2.9e-128 462.2 269 75.5
Manes.16G072000 Manihot esculenta HOM05D005302 ORTHO05D006422 3.8e-128 461.8 269 74.7
Lalb_Chr08g0243151 Lupinus albus HOM05D005302 ORTHO05D006422 5.0e-128 461.5 269 73.6
Haze_21877 Corylus avellana HOM05D005302 ORTHO05D006422 6.5e-128 461.1 321 66.4
LjContig00226g0022694 Lotus japonicus HOM05D005302 ORTHO05D006422 6.5e-128 461.1 271 76.4
LjContig00518g0000858 Lotus japonicus HOM05D005302 ORTHO05D006422 6.5e-128 461.1 271 76.4
SalBow4G1479 Salvia bowleyana HOM05D005302 ORTHO05D006422 1.1e-127 460.3 275 73.1
VMungo1309G1003 Vigna mungo HOM05D005302 ORTHO05D006422 1.4e-127 459.9 269 74.7
MBI04_g05261_MAGBIO Magnolia biondii HOM05D005302 ORTHO05D006422 1.9e-127 459.5 269 74.0
Sed0007027 Sechium edule HOM05D005302 ORTHO05D006422 2.5e-127 459.1 267 74.9
Lj1g0022106 Lotus japonicus HOM05D005302 ORTHO05D006422 3.2e-127 458.8 271 76.0
ClCG08G012300 Citrullus lanatus HOM05D005302 ORTHO05D006422 4.2e-127 458.4 276 72.8
Gohir.A07G022700 Gossypium hirsutum HOM05D005302 ORTHO05D006422 7.2e-127 457.6 270 74.4
FAN27G3010 Fragaria x ananassa HOM05D005302 ORTHO05D006422 9.4e-127 457.2 269 75.5
Phvul.009G108200 Phaseolus vulgaris HOM05D005302 ORTHO05D006422 9.4e-127 457.2 269 75.1
Cpa.g.sc7.259 Carica papaya HOM05D005302 ORTHO05D006422 2.7e-126 455.7 269 75.8
AUR62009303 Chenopodium quinoa HOM05D005302 ORTHO05D006422 6.1e-126 454.5 269 74.7
Sopen08g022330 Solanum pennellii HOM05D005302 ORTHO05D006422 6.1e-126 454.5 271 73.8
Lj8C588T0 Lonicera japonica HOM05D005302 ORTHO05D006422 1.0e-125 453.8 286 74.1
Nitab4.5_0010908g0010 Nicotiana tabacum HOM05D005302 ORTHO05D006422 1.4e-125 453.4 270 72.2
PGSC0003DMG400029051 Solanum tuberosum HOM05D005302 ORTHO05D006422 1.8e-125 453.0 271 73.4
Peaxi162Scf00822g00210 Petunia axillaris HOM05D005302 ORTHO05D006422 2.3e-125 452.6 270 72.2
Gorai.001G027200 Gossypium raimondii HOM05D005302 ORTHO05D006422 3.0e-125 452.2 270 73.3
Solyc08g068570.4 Solanum lycopersicum HOM05D005302 ORTHO05D006422 3.0e-125 452.2 271 73.4
PSO210G0275 Papaver somniferum HOM05D005302 ORTHO05D006422 5.1e-125 451.4 268 73.9
PSO210G3865 Papaver somniferum HOM05D005302 ORTHO05D006422 5.1e-125 451.4 268 73.9
Sp7g30530 Schrenkiella parvula HOM05D005302 ORTHO05D006422 6.7e-125 451.1 271 73.1
EL10Ac2g04046 Beta vulgaris HOM05D005302 ORTHO05D006422 8.8e-125 450.7 269 73.6
Gohir.D07G026100 Gossypium hirsutum HOM05D005302 ORTHO05D006422 8.8e-125 450.7 270 73.3
CAN.G21.50 Capsicum annuum HOM05D005302 ORTHO05D006422 2.6e-124 449.1 270 71.9
BolC7t46379H Brassica oleracea HOM05D005302 ORTHO05D006422 4.4e-124 448.4 271 72.7
AUR62041718 Chenopodium quinoa HOM05D005302 ORTHO05D006422 7.4e-124 447.6 269 73.6
C07p59340 Brassica napus HOM05D005302 ORTHO05D006422 3.7e-123 445.3 271 72.3
Thhalv10025006m.g Eutrema salsugineum HOM05D005302 ORTHO05D006422 1.8e-122 443.0 271 71.2
A03p61580 Brassica napus HOM05D005302 ORTHO05D006422 2.4e-122 442.6 272 72.4
BraA03t15200Z Brassica rapa HOM05D005302 ORTHO05D006422 2.4e-122 442.6 272 72.4
CARHR240760 Cardamine hirsuta HOM05D005302 ORTHO05D006422 5.3e-122 441.4 271 71.6
AL7G18970 Arabidopsis lyrata HOM05D005302 ORTHO05D006422 2.6e-121 439.1 271 70.8
AT4G32770 Arabidopsis thaliana HOM05D005302 ORTHO05D006422 2.6e-121 439.1 271 70.5
Carub.0007s0772 Capsella rubella HOM05D005302 ORTHO05D006422 7.7e-121 437.6 271 70.5
Sabra18G0040100 Salix brachista HOM05D005302 ORTHO05D006422 1.7e-120 436.4 269 72.5
unitig_32.g11070 Utricularia gibba HOM05D005302 ORTHO05D006422 2.2e-120 436.0 277 69.0
Gohir.A05G047400 Gossypium hirsutum HOM05D005302 ORTHO05D006422 1.4e-119 433.3 248 75.0
Lj1g0000494 Lotus japonicus HOM05D005302 ORTHO05D006422 7.2e-119 431.0 271 73.8
CDE08G0186 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 9.4e-119 430.6 269 69.1
Os02g0276500 Oryza sativa ssp. japonica HOM05D005302 ORTHO05D006422 1.2e-118 430.3 267 70.8
Aa31LG2G17190 Aethionema arabicum HOM05D005302 ORTHO05D006422 1.6e-118 429.9 270 68.9
FAN20G2881 Fragaria x ananassa HOM05D005302 ORTHO05D006422 6.7e-117 424.5 293 67.6
Zm00001eb237270 Zea mays HOM05D005302 ORTHO05D006422 6.7e-117 424.5 267 70.8
ATR0315G120 Amborella trichopoda HOM05D005302 ORTHO05D006422 9.7e-116 420.6 269 67.3
CDE05G0893 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 3.7e-115 418.7 269 65.8
FAN15G3230 Fragaria x ananassa HOM05D005302 ORTHO05D006422 2.2e-112 409.5 299 64.2
Oeu036363.2 Olea europaea HOM05D005302 ORTHO05D006422 4.0e-109 398.7 270 70.0
Nitab4.5_0000513g0060 Nicotiana tabacum HOM05D005302 ORTHO05D006422 5.7e-108 394.8 307 59.9
THA.LOC104803808 Tarenaya hassleriana HOM05D005302 ORTHO05D006422 7.0e-106 387.9 209 80.4
vmacro11066 Vaccinium macrocarpon HOM05D005302 ORTHO05D006422 8.5e-104 380.9 267 67.8
AagrBONN_evm.TU.Sc2ySwM_368.1981 Anthoceros agrestis HOM05D005302 ORTHO05D006422 1.1e-103 380.6 269 62.5
Sc23g0005290 Simmondsia chinensis HOM05D005302 ORTHO05D006422 1.2e-102 377.1 210 78.6
Lj1g0026118 Lotus japonicus HOM05D005302 ORTHO05D006422 2.7e-102 375.9 271 66.1
Lj7A704G80 Lonicera japonica HOM05D005302 ORTHO05D006422 3.6e-102 375.6 218 76.1
Mapoly0027s0036 Marchantia polymorpha HOM05D005302 ORTHO05D006422 6.8e-101 371.3 269 62.5
Lj1g0015489 Lotus japonicus HOM05D005302 ORTHO05D006422 8.8e-101 370.9 271 65.3
Haze_21992 Corylus avellana HOM05D005302 ORTHO05D006422 2.0e-100 369.8 396 49.2
Hund19525 Selenicereus undatus HOM05D005302 ORTHO05D006422 2.6e-100 369.4 268 65.3
Pp3c7_470 Physcomitrium patens HOM05D005302 ORTHO05D006422 9.1e-98 360.9 270 59.3
HPP92_005269 Vanilla planifolia HOM05D005302 ORTHO05D006422 1.6e-97 360.1 269 63.9
SMO351G0603 Selaginella moellendorffii HOM05D005302 ORTHO05D006422 1.3e-96 357.1 268 58.6
Pp3c20_5100 Physcomitrium patens HOM05D005302 ORTHO05D006422 5.5e-95 351.7 272 57.0
Cfa013434 Carpinus fangiana HOM05D005302 ORTHO05D006422 1.4e-93 347.1 186 81.7
CBR_g222 Chara braunii HOM05D005302 ORTHO05D006422 1.8e-93 346.7 260 60.8
Ah.16g105570 Amaranthus hybridus HOM05D005302 ORTHO05D006422 4.4e-92 342.0 191 78.0
Hma1.2p1_1884F.1_g306480 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 3.7e-83 312.4 184 77.2
Cre01.g013801 Chlamydomonas reinhardtii HOM05D005302 ORTHO05D006422 4.7e-70 268.9 273 46.9
Hma1.2p1_0393F.1_g143070 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 3.9e-64 249.2 148 75.7
MCO11G337 Micromonas commoda HOM05D005302 ORTHO05D006422 6.9e-53 211.8 275 44.0
SEGI_31241 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 2.4e-45 186.8 148 54.7
FAN24G1627 Fragaria x ananassa HOM05D005302 ORTHO05D006422 5.8e-44 182.2 118 72.0
Hma1.2p1_1884F.1_g306470 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 1.6e-41 174.1 91 82.4
SEGI_29042 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 6.0e-41 172.2 85 82.4
Potri.006G240100 Populus trichocarpa HOM05D005302 ORTHO05D006422 1.2e-36 157.9 185 45.9
Sabra18G0041600 Salix brachista HOM05D005302 ORTHO05D006422 3.4e-36 156.4 109 66.1
CDE05G2043 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 6.2e-30 135.6 148 44.6
Lj7A704G81 Lonicera japonica HOM05D005302 ORTHO05D006422 1.5e-20 104.4 53 84.9
CDE05G1694 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 1.8e-16 90.9 57 66.7
Sabra18G0041700 Salix brachista HOM05D005302 ORTHO05D006422 2.0e-15 87.4 59 62.7
arahy.Tifrunner.gnm1.ann1.B6YE6K Arachis hypogaea HOM05D005302 ORTHO05D006422 3.9e-08 63.2 32 81.2
BcaC09g52073 Brassica carinata HOM05D002602 ORTHO05D002661 3.9e-08 63.2 42 64.3


User provided reference genes

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