Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g14100 Coffea canephora HOM05D003826 ORTHO05D004479 3.9e-96 354.8 175 100.0
Dinv13602 Davidia involucrata HOM05D003826 ORTHO05D004479 1.3e-67 260.0 167 74.3
Hma1.2p1_1058F.1_g252870 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 1.3e-67 260.0 166 72.3
Duzib147G0892 Durio zibethinus HOM05D003826 ORTHO05D004479 1.9e-66 256.1 175 70.3
PGR102G1409 Punica granatum HOM05D003826 ORTHO05D004479 5.5e-66 254.6 166 72.3
Cpa.g.sc55.25 Carica papaya HOM05D003826 ORTHO05D004479 9.4e-66 253.8 167 71.9
Hma1.2p1_0908F.1_g235485 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 2.1e-65 252.7 169 71.0
PGSC0003DMG400031403 Solanum tuberosum HOM05D003826 ORTHO05D004479 3.6e-65 251.9 171 69.6
TAR628G1674 Trochodendron aralioides HOM05D003826 ORTHO05D004479 3.6e-65 251.9 172 70.9
Cfa006882 Carpinus fangiana HOM05D003826 ORTHO05D004479 1.0e-64 250.4 167 71.9
Haze_03870 Corylus avellana HOM05D003826 ORTHO05D004479 1.4e-64 250.0 167 71.9
Nn1g05569 Nelumbo nucifera HOM05D003826 ORTHO05D004479 1.4e-64 250.0 171 69.0
PSO541G0595 Papaver somniferum HOM05D003826 ORTHO05D004479 1.4e-64 250.0 175 68.6
Rhsim05G0101900 Rhododendron simsii HOM05D003826 ORTHO05D004479 1.4e-64 250.0 162 73.5
vmacro19957 Vaccinium macrocarpon HOM05D003826 ORTHO05D004479 1.4e-64 250.0 170 72.4
Actinidia28031 Actinidia chinensis HOM05D003826 ORTHO05D004479 3.0e-64 248.8 172 69.2
CiPaw.07G047500 Carya illinoinensis HOM05D003826 ORTHO05D004479 6.7e-64 247.7 167 72.5
CSS0016886 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 8.8e-64 247.3 172 69.2
CSS0036052 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 8.8e-64 247.3 172 69.2
Sc18g0007060 Simmondsia chinensis HOM05D003826 ORTHO05D004479 1.5e-63 246.5 172 68.6
Thecc.01G090400 Theobroma cacao HOM05D003826 ORTHO05D004479 1.5e-63 246.5 165 70.9
Atru.chr3.1247 Acer truncatum HOM05D003826 ORTHO05D004479 2.0e-63 246.1 168 67.3
CSS0050337 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 2.6e-63 245.7 161 70.8
Cc02_g20920 Coffea canephora HOM05D003826 ORTHO05D004479 3.3e-63 245.4 171 66.7
GSVIVG01015652001 Vitis vinifera HOM05D003826 ORTHO05D004479 1.3e-62 243.4 163 69.9
Ciclev10029337m.g Citrus clementina HOM05D003826 ORTHO05D004479 1.7e-62 243.0 171 67.3
Prupe.6G201600 Prunus persica HOM05D003826 ORTHO05D004479 1.7e-62 243.0 167 68.3
Atru.chr6.1261 Acer truncatum HOM05D003826 ORTHO05D004479 2.8e-62 242.3 171 67.8
Atru.chr6.1269 Acer truncatum HOM05D003826 ORTHO05D004479 2.8e-62 242.3 171 67.8
MBI16_g12461_MAGBIO Magnolia biondii HOM05D003826 ORTHO05D004479 2.8e-62 242.3 175 68.0
Sp3g27460 Schrenkiella parvula HOM05D003826 ORTHO05D004479 2.8e-62 242.3 169 67.5
MSTRG.20281 Avicennia marina HOM05D003826 ORTHO05D004479 3.7e-62 241.9 171 67.8
Thhalv10022868m.g Eutrema salsugineum HOM05D003826 ORTHO05D004479 3.7e-62 241.9 169 68.0
HanXRQChr08g0227191 Helianthus annuus HOM05D003826 ORTHO05D004479 3.7e-62 241.9 171 66.7
Lalb_Chr05g0216361 Lupinus albus HOM05D003826 ORTHO05D004479 4.8e-62 241.5 165 70.9
Manes.07G038200 Manihot esculenta HOM05D003826 ORTHO05D004479 4.8e-62 241.5 160 70.6
arahy.Tifrunner.gnm1.ann1.JLXM4S Arachis hypogaea HOM05D003826 ORTHO05D004479 6.3e-62 241.1 165 70.9
arahy.Tifrunner.gnm1.ann1.QQ8XF2 Arachis hypogaea HOM05D003826 ORTHO05D004479 6.3e-62 241.1 165 70.9
Dinv24149 Davidia involucrata HOM05D003826 ORTHO05D004479 8.2e-62 240.7 169 70.4
FvH4_2g11710 Fragaria vesca HOM05D003826 ORTHO05D004479 8.2e-62 240.7 171 66.7
FAN24G2578 Fragaria x ananassa HOM05D003826 ORTHO05D004479 8.2e-62 240.7 171 66.7
Gohir.A13G050900 Gossypium hirsutum HOM05D003826 ORTHO05D004479 8.2e-62 240.7 171 66.1
Aa31LG8G12520 Aethionema arabicum HOM05D003826 ORTHO05D004479 1.1e-61 240.4 169 67.5
Oeu042406.1 Olea europaea HOM05D003826 ORTHO05D004479 1.1e-61 240.4 171 66.7
BolC9t54449H Brassica oleracea HOM05D003826 ORTHO05D004479 1.4e-61 240.0 172 67.4
ECA236G1467 Erigeron canadensis HOM05D003826 ORTHO05D000778 1.4e-61 240.0 171 66.1
Manes.12G126200 Manihot esculenta HOM05D003826 ORTHO05D004479 1.4e-61 240.0 163 71.2
Sed0006788 Sechium edule HOM05D003826 ORTHO05D004479 1.4e-61 240.0 171 67.3
Thecc.02G129300 Theobroma cacao HOM05D003826 ORTHO05D004479 1.4e-61 240.0 171 66.1
TAR376G0575 Trochodendron aralioides HOM05D003826 ORTHO05D004479 1.4e-61 240.0 164 70.1
BcaB02g11486 Brassica carinata HOM05D003826 ORTHO05D004479 1.8e-61 239.6 169 67.5
Gorai.013G055500 Gossypium raimondii HOM05D003826 ORTHO05D004479 1.8e-61 239.6 171 65.5
MSTRG.27816 Avicennia marina HOM05D003826 ORTHO05D004479 2.4e-61 239.2 171 65.5
BcaC04g22775 Brassica carinata HOM05D003826 ORTHO05D004479 2.4e-61 239.2 172 67.4
C09p15420 Brassica napus HOM05D003826 ORTHO05D004479 2.4e-61 239.2 172 67.4
Migut.B00552 Erythranthe guttata HOM05D003826 ORTHO05D004479 2.4e-61 239.2 171 67.8
TWI59G0852 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 2.4e-61 239.2 171 67.3
Eucgr.G00988 Eucalyptus grandis HOM05D003826 ORTHO05D004479 3.1e-61 238.8 171 66.1
Prupe.8G069800 Prunus persica HOM05D003826 ORTHO05D004479 3.1e-61 238.8 171 66.1
Aqoxy6G00874 Aquilegia oxysepala HOM05D003826 ORTHO05D004479 4.1e-61 238.4 175 67.4
Nitab4.5_0008998g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 4.1e-61 238.4 171 66.7
A09p13020 Brassica napus HOM05D003826 ORTHO05D004479 5.3e-61 238.0 172 66.9
BraA09t36947Z Brassica rapa HOM05D003826 ORTHO05D004479 5.3e-61 238.0 172 66.9
PGR042G0672 Punica granatum HOM05D003826 ORTHO05D004479 7.0e-61 237.7 164 67.1
TWI14G0912 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 7.0e-61 237.7 171 65.5
Nitab4.5_0002017g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 9.1e-61 237.3 171 66.7
Carub.0003s2836 Capsella rubella HOM05D003826 ORTHO05D004479 1.6e-60 236.5 169 65.1
ClCG09G016080 Citrullus lanatus HOM05D003826 ORTHO05D004479 1.6e-60 236.5 171 64.9
CsaV3_7G006880 Cucumis sativus L. HOM05D003826 ORTHO05D004479 1.6e-60 236.5 174 66.1
Migut.N01096 Erythranthe guttata HOM05D003826 ORTHO05D004479 1.6e-60 236.5 174 64.9
MD01G1039300 Malus domestica HOM05D003826 ORTHO05D004479 1.6e-60 236.5 167 65.9
Os03g0737400 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 1.6e-60 236.5 172 65.7
PGSC0003DMG400033580 Solanum tuberosum HOM05D003826 ORTHO05D004479 2.0e-60 236.1 169 66.3
Peaxi162Scf00003g03230 Petunia axillaris HOM05D003826 ORTHO05D004479 2.6e-60 235.7 171 67.3
Zm00001eb215290 Zea mays HOM05D003826 ORTHO05D004479 2.6e-60 235.7 168 67.9
Lj5A230G39 Lonicera japonica HOM05D003826 ORTHO05D004479 3.5e-60 235.3 158 69.6
Solyc01g105970.3 Solanum lycopersicum HOM05D003826 ORTHO05D004479 3.5e-60 235.3 169 66.3
Sopen01g048350 Solanum pennellii HOM05D003826 ORTHO05D004479 3.5e-60 235.3 169 66.3
CARHR104200 Cardamine hirsuta HOM05D003826 ORTHO05D004479 4.5e-60 235.0 169 64.5
CiPaw.05G029600 Carya illinoinensis HOM05D003826 ORTHO05D004479 4.5e-60 235.0 171 64.3
Manes.10G098600 Manihot esculenta HOM05D003826 ORTHO05D004479 4.5e-60 235.0 171 65.5
Phvul.002G212900 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 4.5e-60 235.0 174 63.8
unitig_46.g18833 Utricularia gibba HOM05D003826 ORTHO05D004479 4.5e-60 235.0 159 69.8
AL3G45800 Arabidopsis lyrata HOM05D003826 ORTHO05D004479 5.9e-60 234.6 169 65.1
CAN.G997.2 Capsicum annuum HOM05D003826 ORTHO05D004479 7.7e-60 234.2 169 64.5
MD05G1047400 Malus domestica HOM05D003826 ORTHO05D004479 7.7e-60 234.2 171 63.7
Cfa005734 Carpinus fangiana HOM05D003826 ORTHO05D004479 1.0e-59 233.8 171 63.7
Duzib052G0856 Durio zibethinus HOM05D003826 ORTHO05D004479 1.0e-59 233.8 171 63.7
arahy.Tifrunner.gnm1.ann1.AL483W Arachis hypogaea HOM05D003826 ORTHO05D004479 1.3e-59 233.4 163 69.3
Haze_10523 Corylus avellana HOM05D003826 ORTHO05D004479 1.3e-59 233.4 171 63.7
Nitab4.5_0011038g0020 Nicotiana tabacum HOM05D003826 ORTHO05D004479 1.3e-59 233.4 171 64.9
arahy.Tifrunner.gnm1.ann1.8F9AHD Arachis hypogaea HOM05D003826 ORTHO05D004479 1.7e-59 233.0 163 68.7
EL10Ac9g22073 Beta vulgaris HOM05D003826 ORTHO05D004479 1.7e-59 233.0 161 67.1
DCAR_003601 Daucus carota HOM05D003826 ORTHO05D004479 1.7e-59 233.0 173 66.5
QL11p025207 Quercus lobata HOM05D003826 ORTHO05D004479 2.2e-59 232.6 171 65.5
Cpa.g.sc20.1 Carica papaya HOM05D003826 ORTHO05D004479 2.9e-59 232.3 160 66.9
THA.LOC104807183 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 2.9e-59 232.3 171 62.0
RcHm_v2.0_Chr6g0271011 Rosa chinensis HOM05D003826 ORTHO05D004479 3.8e-59 231.9 171 65.5
Sed0018824 Sechium edule HOM05D003826 ORTHO05D004479 3.8e-59 231.9 171 63.2
Ah.03g139970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 1.5e-58 229.9 163 68.1
MELO3C018606.2 Cucumis melo HOM05D003826 ORTHO05D004479 1.9e-58 229.6 173 65.3
Potri.017G043900 Populus trichocarpa HOM05D003826 ORTHO05D004479 1.9e-58 229.6 171 63.2
CANSAT54G1150 Cannabis sativa HOM05D003826 ORTHO05D004479 4.2e-58 228.4 174 62.6
Sabra17G0029800 Salix brachista HOM05D003826 ORTHO05D004479 4.2e-58 228.4 163 66.3
CDE04G3107 Ceratophyllum demersum HOM05D003826 ORTHO05D004479 2.1e-57 226.1 167 64.1
Lj4g0024713 Lotus japonicus HOM05D003826 ORTHO05D004479 2.1e-57 226.1 162 66.0
Lalb_Chr16g0382941 Lupinus albus HOM05D003826 ORTHO05D004479 2.7e-57 225.7 176 62.5
TPR.G9500 Trifolium pratense HOM05D003826 ORTHO05D004479 3.6e-57 225.3 173 63.0
VMungo0540G1729 Vigna mungo HOM05D003826 ORTHO05D004479 6.1e-57 224.6 170 62.4
Lsat_1_v5_gn_7_82781 Lactuca sativa HOM05D003826 ORTHO05D004479 8.0e-57 224.2 171 66.1
unitig_37.g12793 Utricularia gibba HOM05D003826 ORTHO05D004479 8.0e-57 224.2 171 60.2
Medtr2g009600 Medicago truncatula HOM05D003826 ORTHO05D004479 1.4e-56 223.4 170 62.9
Potri.017G043700 Populus trichocarpa HOM05D003826 ORTHO05D004479 1.8e-56 223.0 171 62.6
Glyma.13G256700 Glycine max HOM05D003826 ORTHO05D004479 4.0e-56 221.9 170 61.2
Psat1g214120 Pisum sativum HOM05D003826 ORTHO05D004479 6.8e-56 221.1 170 64.1
Lj6g0003535 Lotus japonicus HOM05D003826 ORTHO05D004479 1.2e-55 220.3 170 61.8
Medtr4g093560 Medicago truncatula HOM05D003826 ORTHO05D004479 1.5e-55 219.9 174 59.8
Ca_00163_v3 Cicer arietinum L. HOM05D003826 ORTHO05D004479 2.6e-55 219.2 170 64.1
Glyma.07G181900 Glycine max HOM05D003826 ORTHO05D004479 3.4e-55 218.8 174 59.8
Psat7g101120 Pisum sativum HOM05D003826 ORTHO05D004479 7.5e-55 217.6 174 59.2
SEGI_37389 Sequoiadendron giganteum HOM05D003826 ORTHO05D004479 1.7e-54 216.5 164 64.0
FvH4_1g19640 Fragaria vesca HOM05D003826 ORTHO05D004479 3.7e-54 215.3 165 66.1
FAN19G1458 Fragaria x ananassa HOM05D003826 ORTHO05D004479 3.7e-54 215.3 165 66.1
FAN23G0964 Fragaria x ananassa HOM05D003826 ORTHO05D004479 4.8e-54 214.9 165 66.1
FAN26G3235 Fragaria x ananassa HOM05D003826 ORTHO05D004479 4.8e-54 214.9 165 66.1
Phvul.006G202000 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 4.8e-54 214.9 159 63.5
arahy.Tifrunner.gnm1.ann1.8NDV1J Arachis hypogaea HOM05D003826 ORTHO05D004479 4.1e-53 211.8 163 60.7
Gorai.008G017400 Gossypium raimondii HOM05D003826 ORTHO05D004479 9.1e-53 210.7 172 59.3
AUR62003663 Chenopodium quinoa HOM05D003826 ORTHO05D004479 1.2e-52 210.3 165 63.6
Gohir.D12G017100 Gossypium hirsutum HOM05D003826 ORTHO05D004479 3.5e-52 208.8 175 58.3
arahy.Tifrunner.gnm1.ann1.MWC9N2 Arachis hypogaea HOM05D001561 ORTHO05D001715 1.0e-51 207.2 163 60.7
AagrBONN_evm.TU.Sc2ySwM_362.1195 Anthoceros agrestis HOM05D003826 ORTHO05D004479 1.3e-51 206.8 158 60.8
CANSAT01G0714 Cannabis sativa HOM05D003826 ORTHO05D004479 2.2e-51 206.1 165 60.0
HPP92_016899 Vanilla planifolia HOM05D003826 ORTHO05D004479 2.2e-51 206.1 164 58.5
FAN28G0881 Fragaria x ananassa HOM05D003826 ORTHO05D004479 6.5e-51 204.5 179 60.9
Os03g0737300 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 1.5e-50 203.4 171 57.9
TPR.G2887 Trifolium pratense HOM05D003826 ORTHO05D004479 1.5e-50 203.4 163 57.7
COL.COLO4_32389 Corchorus olitorius HOM05D003826 ORTHO05D004479 2.5e-50 202.6 171 57.3
SMO271G0099 Selaginella moellendorffii HOM05D003826 ORTHO05D004479 5.5e-50 201.4 158 58.2
SGA_v2.0_scaffold83G26375 Striga asiatica HOM05D003826 ORTHO05D004479 9.4e-50 200.7 132 69.7
Mapoly0042s0019 Marchantia polymorpha HOM05D003826 ORTHO05D004479 8.0e-49 197.6 156 60.3
AT2G14110 Arabidopsis thaliana HOM05D003826 ORTHO05D004479 1.4e-48 196.8 132 66.7
Mapoly0032s0046 Marchantia polymorpha HOM05D003826 ORTHO05D004479 7.5e-47 191.0 159 56.6
Pp3c1_28610 Physcomitrium patens HOM05D003826 ORTHO05D004479 7.5e-47 191.0 165 54.5
Lj5A230G40 Lonicera japonica HOM05D003826 ORTHO05D004479 9.8e-47 190.7 162 57.4
RcHm_v2.0_Chr2g0111211 Rosa chinensis HOM05D003826 ORTHO05D004479 1.3e-46 190.3 163 60.7
Os11g0434000 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 1.8e-45 186.4 167 55.1
Peaxi162Scf00299g00634 Petunia axillaris HOM05D003826 ORTHO05D004479 2.4e-45 186.0 171 54.4
Hund16529 Selenicereus undatus HOM05D003826 ORTHO05D004479 1.2e-44 183.7 127 67.7
Nitab4.5_0002095g0060 Nicotiana tabacum HOM05D003826 ORTHO05D004479 1.6e-44 183.3 139 61.2
CBR_g26273 Chara braunii HOM05D003826 ORTHO05D004479 1.0e-43 180.6 157 53.5
Hund00378 Selenicereus undatus HOM05D003826 ORTHO05D004479 1.0e-43 180.6 119 73.9
GSVIVG01015647001 Vitis vinifera HOM05D003826 ORTHO05D004479 8.6e-43 177.6 137 65.7
SalBow6G1284 Salvia bowleyana HOM05D003826 ORTHO05D004479 2.5e-42 176.0 142 62.0
ATR0767G074 Amborella trichopoda HOM05D003826 ORTHO05D004479 5.6e-42 174.9 128 67.2
RhsimUnG0154900 Rhododendron simsii HOM05D003826 ORTHO05D004479 5.7e-39 164.9 160 56.9
ATR0767G082 Amborella trichopoda HOM05D003826 ORTHO05D004479 2.2e-38 162.9 128 60.9
SalBow8G4107 Salvia bowleyana HOM05D003826 ORTHO05D004479 4.1e-37 158.7 164 52.4
Ah.01g023970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 4.6e-36 155.2 162 50.0
Glyma.15G058200 Glycine max HOM05D003826 ORTHO05D004479 1.3e-35 153.7 163 48.5
AUR62027111 Chenopodium quinoa HOM05D003826 ORTHO05D004479 5.0e-35 151.8 164 49.4
AUR62012887 Chenopodium quinoa HOM05D003826 ORTHO05D004479 6.6e-35 151.4 164 49.4
AUR62017972 Chenopodium quinoa HOM05D003826 ORTHO05D004479 6.2e-33 144.8 99 69.7
GSVIVG01015646001 Vitis vinifera HOM05D003826 ORTHO05D004479 1.3e-30 137.1 113 61.1
Mapoly0010s0051 Marchantia polymorpha HOM05D003826 ORTHO05D004479 8.3e-30 134.4 151 44.4
Ciclev10026755m.g Citrus clementina HOM05D003826 ORTHO05D004479 3.2e-29 132.5 93 66.7
Nn5g29884 Nelumbo nucifera HOM05D003826 ORTHO05D004479 4.1e-29 132.1 89 67.4
VMungo0251G2759 Vigna mungo HOM05D003826 ORTHO05D004479 9.2e-29 131.0 95 64.2
Solyc10g047310.1 Solanum lycopersicum HOM05D003826 ORTHO05D004479 1.8e-24 116.7 92 57.6
MD10G1054300 Malus domestica HOM05D003826 ORTHO05D004479 2.9e-22 109.4 73 61.6
Lalb_Chr18g0060401 Lupinus albus HOM05D003826 ORTHO05D004479 2.7e-20 102.8 176 38.1
Mapoly0042s0017 Marchantia polymorpha HOM05D003826 ORTHO05D004479 6.8e-16 88.2 84 50.0
THA.LOC104824951 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 2.7e-12 76.3 107 44.9
MCO09G863 Micromonas commoda HOM05D003826 ORTHO05D004479 1.5e-10 70.5 180 26.7
MCO11G520 Micromonas commoda HOM05D003826 ORTHO05D004479 5.6e-10 68.6 176 29.5
Gohir.D13G049650 Gossypium hirsutum HOM05D003826 ORTHO05D004479 1.6e-09 67.0 53 62.3
Sopen10g017590 Solanum pennellii HOM05D000002 ORTHO05D000001 3.6e-09 65.9 51 54.9
Cre09.g401738 Chlamydomonas reinhardtii HOM05D003826 ORTHO05D004479 5.2e-08 62.0 180 27.2
FAN15G0689 Fragaria x ananassa HOM05D003826 ORTHO05D004479 4.4e-07 58.9 34 76.5
Dinv36604 Davidia involucrata HOM05D003826 ORTHO05D004479 1.7e-06 57.0 34 73.5
CANSAT01G2972 Cannabis sativa HOM05D000003 ORTHO05D000004 6.4e-06 55.1 45 55.6


User provided reference genes

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