Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g14040 Coffea canephora HOM05D007889 ORTHO05D009987 5.3e-51 204.1 108 100.0
Solyc11g010680.4 Solanum lycopersicum HOM05D007889 ORTHO05D009987 3.1e-27 125.2 92 76.1
Sopen11g005480 Solanum pennellii HOM05D007889 ORTHO05D009987 3.1e-27 125.2 92 76.1
PGSC0003DMG402016199 Solanum tuberosum HOM05D007889 ORTHO05D009987 9.1e-27 123.6 92 75.0
MSTRG.15685 Avicennia marina HOM05D007889 ORTHO05D009987 1.7e-25 119.4 100 66.0
Oeu012264.1 Olea europaea HOM05D007889 ORTHO05D009987 1.2e-23 113.2 108 60.2
PGR102G1376 Punica granatum HOM05D007889 ORTHO05D009987 2.7e-23 112.1 101 66.3
Nitab4.5_0006221g0010 Nicotiana tabacum HOM05D007889 ORTHO05D009987 1.0e-22 110.2 104 62.5
Nitab4.5_0006217g0010 Nicotiana tabacum HOM05D007889 ORTHO05D009987 1.4e-22 109.8 92 69.6
Dinv36939 Davidia involucrata HOM05D007889 ORTHO05D009987 3.0e-22 108.6 101 66.3
Manes.13G100900 Manihot esculenta HOM05D007889 ORTHO05D009987 5.1e-22 107.8 105 61.9
CANSAT01G1217 Cannabis sativa HOM05D007889 ORTHO05D009987 6.7e-22 107.5 101 62.4
CSS0006316 Camellia sinensis var. sinensis HOM05D007889 ORTHO05D009987 1.1e-21 106.7 102 64.7
CSS0045661 Camellia sinensis var. sinensis HOM05D007889 ORTHO05D009987 1.1e-21 106.7 102 64.7
Migut.K00803 Erythranthe guttata HOM05D007889 ORTHO05D009987 1.1e-21 106.7 97 63.9
SGA_v2.0_scaffold195G40857 Striga asiatica HOM05D007889 ORTHO05D009987 1.5e-21 106.3 107 57.9
Thecc.01G089900 Theobroma cacao HOM05D007889 ORTHO05D009987 2.0e-21 105.9 105 60.0
Duzib147G1657 Durio zibethinus HOM05D007889 ORTHO05D009987 3.3e-21 105.1 105 59.0
SalBow3G4637 Salvia bowleyana HOM05D007889 ORTHO05D009987 3.3e-21 105.1 101 61.4
Ah.02g123520 Amaranthus hybridus HOM05D007889 ORTHO05D009987 5.7e-21 104.4 102 61.8
Aa31LG1G16500 Aethionema arabicum HOM05D007889 ORTHO05D009987 7.4e-21 104.0 105 57.1
AT5G65495 Arabidopsis thaliana HOM05D007889 ORTHO05D009987 9.7e-21 103.6 105 56.2
THA.LOC109116914 Tarenaya hassleriana HOM05D007889 ORTHO05D009987 9.7e-21 103.6 88 64.8
Atru.chr3.1237 Acer truncatum HOM05D007889 ORTHO05D009987 2.2e-20 102.4 102 58.8
RcHm_v2.0_Chr2g0111151 Rosa chinensis HOM05D007889 ORTHO05D009987 3.7e-20 101.7 101 62.4
Sp2g28580 Schrenkiella parvula HOM05D007889 ORTHO05D009987 3.7e-20 101.7 71 73.2
AL8G43080 Arabidopsis lyrata HOM05D007889 ORTHO05D009987 4.8e-20 101.3 73 72.6
Cpa.g.sc55.18 Carica papaya HOM05D007889 ORTHO05D009987 6.3e-20 100.9 104 58.7
Haze_03881 Corylus avellana HOM05D007889 ORTHO05D009987 6.3e-20 100.9 105 59.0
QL06p035849 Quercus lobata HOM05D007889 ORTHO05D009987 6.3e-20 100.9 104 57.7
BcaC01g02781 Brassica carinata HOM05D007889 ORTHO05D009987 8.2e-20 100.5 73 72.6
C03p60490 Brassica napus HOM05D007889 ORTHO05D009987 8.2e-20 100.5 73 72.6
COL.COLO4_27358 Corchorus olitorius HOM05D007889 ORTHO05D009987 1.1e-19 100.1 105 59.0
Peaxi162Scf00474g00715 Petunia axillaris HOM05D007889 ORTHO05D009987 1.1e-19 100.1 92 68.5
Carub.0008s2635 Capsella rubella HOM05D007889 ORTHO05D009987 1.4e-19 99.8 71 73.2
CiPaw.07G047100 Carya illinoinensis HOM05D007889 ORTHO05D009987 1.4e-19 99.8 102 59.8
Gohir.A02G144900 Gossypium hirsutum HOM05D007889 ORTHO05D009987 1.4e-19 99.8 105 58.1
Gohir.D03G035700 Gossypium hirsutum HOM05D007889 ORTHO05D009987 1.4e-19 99.8 105 58.1
Thhalv10005325m.g Eutrema salsugineum HOM05D007889 ORTHO05D009987 1.8e-19 99.4 73 69.9
Gorai.003G037300 Gossypium raimondii HOM05D007889 ORTHO05D009987 2.4e-19 99.0 105 58.1
unitig_32.g11801 Utricularia gibba HOM05D007889 ORTHO05D009987 2.4e-19 99.0 103 57.3
TWI74G1088 Tripterygium wilfordii HOM05D007889 ORTHO05D009987 3.1e-19 98.6 100 60.0
Actinidia25305 Actinidia chinensis HOM05D007889 ORTHO05D009987 4.1e-19 98.2 101 59.4
Manes.12G125800 Manihot esculenta HOM05D007889 ORTHO05D009987 4.1e-19 98.2 106 55.7
BolC3t18310H Brassica oleracea HOM05D007889 ORTHO05D009987 5.3e-19 97.8 73 71.2
Nitab4.5_0000902g0320 Nicotiana tabacum HOM05D007889 ORTHO05D009987 6.9e-19 97.4 100 56.0
FAN23G2864 Fragaria x ananassa HOM05D007889 ORTHO05D009987 9.1e-19 97.1 100 59.0
FAN26G2710 Fragaria x ananassa HOM05D007889 ORTHO05D009987 9.1e-19 97.1 100 59.0
FAN28G0932 Fragaria x ananassa HOM05D007889 ORTHO05D009987 9.1e-19 97.1 100 59.0
Lsat_1_v5_gn_4_143420 Lactuca sativa HOM05D007889 ORTHO05D009987 1.2e-18 96.7 105 57.1
Nitab4.5_0007872g0020 Nicotiana tabacum HOM05D007889 ORTHO05D009987 1.5e-18 96.3 100 55.0
FvH4_1g19600 Fragaria vesca HOM05D007889 ORTHO05D009987 2.0e-18 95.9 100 61.0
FAN19G1328 Fragaria x ananassa HOM05D007889 ORTHO05D009987 2.0e-18 95.9 100 61.0
Ciclev10026840m.g Citrus clementina HOM05D007889 ORTHO05D009987 2.6e-18 95.5 105 56.2
ECA232G4810 Erigeron canadensis HOM05D007889 ORTHO05D009987 5.9e-18 94.4 102 56.9
THA.LOC109116122 Tarenaya hassleriana HOM05D007889 ORTHO05D009987 5.9e-18 94.4 88 60.2
TWI77G0910 Tripterygium wilfordii HOM05D007889 ORTHO05D009987 7.7e-18 94.0 100 58.0
BraA06t26160Z Brassica rapa HOM05D007889 ORTHO05D009987 1.3e-17 93.2 100 56.0
Prupe.6G202300 Prunus persica HOM05D007889 ORTHO05D009987 5.0e-17 91.3 101 58.4
AUR62003668 Chenopodium quinoa HOM05D007889 ORTHO05D009987 1.9e-16 89.4 103 55.3
EL10Ac6g15200 Beta vulgaris HOM05D007889 ORTHO05D009987 2.5e-16 89.0 66 75.8
Lj4g0025467 Lotus japonicus HOM05D007889 ORTHO05D009987 2.5e-16 89.0 101 54.5
Ca_22615_v3 Cicer arietinum L. HOM05D007889 ORTHO05D009987 2.1e-15 85.9 79 63.3
MELO3C032898.2 Cucumis melo HOM05D007889 ORTHO05D009987 6.1e-15 84.3 77 66.2
Psat4g119800 Pisum sativum HOM05D007889 ORTHO05D009987 1.0e-14 83.6 71 67.6
Medtr8g068560 Medicago truncatula HOM05D007889 ORTHO05D009987 3.0e-14 82.0 68 69.1
Cfa006876 Carpinus fangiana HOM05D007889 ORTHO05D009987 5.2e-14 81.3 105 51.4
Rhsim10G0173200 Rhododendron simsii HOM05D007889 ORTHO05D009987 8.8e-14 80.5 57 78.9
Aqoxy5G01377 Aquilegia oxysepala HOM05D007889 ORTHO05D009987 2.0e-13 79.3 95 52.6
Eucgr.L00470 Eucalyptus grandis HOM05D007889 ORTHO05D009987 2.2e-12 75.9 73 63.0
PSO541G6452 Papaver somniferum HOM05D007889 ORTHO05D009987 2.2e-12 75.9 68 63.2
CsaV3_6G044960 Cucumis sativus L. HOM05D007889 ORTHO05D009987 4.1e-11 71.6 65 67.7
Eucgr.H04722 Eucalyptus grandis HOM05D007889 ORTHO05D009987 1.0e-09 67.0 101 46.5
Lalb_Chr05g0228531 Lupinus albus HOM05D007889 ORTHO05D009987 2.9e-09 65.5 53 71.7
vmacro08762 Vaccinium macrocarpon HOM05D007889 ORTHO05D009987 1.9e-08 62.8 50 72.0
Nn5g29873 Nelumbo nucifera HOM05D007889 ORTHO05D009987 5.5e-08 61.2 95 46.3
TAR381G0304 Trochodendron aralioides HOM05D007889 ORTHO05D009987 5.2e-06 54.7 71 52.1


User provided reference genes

Program Settings