Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g13970 Coffea canephora HOM05D005482 ORTHO05D006502 0.0e+00 1154.0 615 100.0
Nitab4.5_0000128g0050 Nicotiana tabacum HOM05D005482 ORTHO05D006502 3.9e-207 725.3 623 65.5
Dinv36943 Davidia involucrata HOM05D005482 ORTHO05D006502 2.5e-206 722.6 623 63.1
Nitab4.5_0007769g0050 Nicotiana tabacum HOM05D005482 ORTHO05D006502 1.1e-204 717.2 615 65.4
CAN.G581.10 Capsicum annuum HOM05D005482 ORTHO05D006502 2.3e-199 699.5 621 63.1
PGSC0003DMG400014586 Solanum tuberosum HOM05D005482 ORTHO05D006502 3.9e-199 698.7 635 61.7
CSS0020800 Camellia sinensis var. sinensis HOM05D005482 ORTHO05D006502 9.6e-198 694.1 657 59.2
Thecc.01G089100 Theobroma cacao HOM05D005482 ORTHO05D006502 1.2e-195 687.2 615 61.1
Solyc05g051370.3 Solanum lycopersicum HOM05D005482 ORTHO05D006502 3.4e-195 685.6 720 56.1
Sopen05g029760 Solanum pennellii HOM05D005482 ORTHO05D006502 2.9e-194 682.6 720 56.4
Peaxi162Scf01142g00001 Petunia axillaris HOM05D005482 ORTHO05D006502 2.4e-193 679.5 626 63.1
QL06p035944 Quercus lobata HOM05D005482 ORTHO05D006502 4.8e-189 665.2 618 60.7
Hma1.2p1_0369F.1_g137400 Hydrangea macrophylla HOM05D005482 ORTHO05D006502 7.6e-187 657.9 622 60.3
Cfa006872 Carpinus fangiana HOM05D005482 ORTHO05D006502 3.2e-185 652.5 629 57.6
Gohir.D12G079700 Gossypium hirsutum HOM05D005482 ORTHO05D006502 7.1e-185 651.4 617 58.3
Gorai.008G093000 Gossypium raimondii HOM05D005482 ORTHO05D006502 7.1e-185 651.4 617 58.3
Gohir.A12G084900 Gossypium hirsutum HOM05D005482 ORTHO05D006502 6.0e-184 648.3 617 57.9
MSTRG.23386 Avicennia marina HOM05D005482 ORTHO05D006502 3.7e-181 639.0 628 59.9
vmacro18548 Vaccinium macrocarpon HOM05D005482 ORTHO05D006502 9.3e-177 624.4 642 57.3
COL.COLO4_27370 Corchorus olitorius HOM05D005482 ORTHO05D006502 2.7e-176 622.9 617 57.1
Manes.12G125300 Manihot esculenta HOM05D005482 ORTHO05D006502 3.5e-176 622.5 619 58.2
Prupe.6G203300 Prunus persica HOM05D005482 ORTHO05D006502 4.6e-176 622.1 622 57.2
Dinv13587 Davidia involucrata HOM05D005482 ORTHO05D006502 3.3e-174 615.9 561 61.0
Duzib264G1263 Durio zibethinus HOM05D005482 ORTHO05D006502 4.3e-174 615.5 619 56.1
TAR625G0934 Trochodendron aralioides HOM05D005482 ORTHO05D006502 4.3e-174 615.5 624 58.0
SGA_v2.0_scaffold108G30927 Striga asiatica HOM05D005482 ORTHO05D006502 1.3e-173 614.0 649 57.3
MD01G1040900 Malus domestica HOM05D005482 ORTHO05D006502 1.6e-173 613.6 623 57.5
CiPaw.08G141000 Carya illinoinensis HOM05D005482 ORTHO05D006502 3.7e-173 612.5 617 56.6
TWI77G0993 Tripterygium wilfordii HOM05D005482 ORTHO05D006502 1.1e-172 610.9 615 56.7
Rhsim08G0017200 Rhododendron simsii HOM05D005482 ORTHO05D006502 6.9e-172 608.2 630 55.2
CSS0030560 Camellia sinensis var. sinensis HOM05D005482 ORTHO05D006502 1.2e-171 607.4 573 59.7
Lj2A532G30 Lonicera japonica HOM05D005482 ORTHO05D006502 2.2e-170 603.2 614 56.5
MD15G1310400 Malus domestica HOM05D005482 ORTHO05D006502 6.5e-170 601.7 627 56.0
TWI74G1080 Tripterygium wilfordii HOM05D005482 ORTHO05D006502 6.5e-170 601.7 618 55.5
FvH4_1g19490 Fragaria vesca HOM05D005482 ORTHO05D006502 1.1e-169 600.9 625 55.7
FAN19G3176 Fragaria x ananassa HOM05D005482 ORTHO05D006502 5.5e-169 598.6 625 55.5
FAN23G0007 Fragaria x ananassa HOM05D005482 ORTHO05D006502 2.7e-168 596.3 625 55.4
FAN28G0477 Fragaria x ananassa HOM05D005482 ORTHO05D006502 1.9e-166 590.1 629 54.4
Eucgr.H02447 Eucalyptus grandis HOM05D005482 ORTHO05D006502 4.3e-166 589.0 632 54.0
Oeu042113.2 Olea europaea HOM05D005482 ORTHO05D006502 4.3e-166 589.0 637 56.7
CiPaw.07G046300 Carya illinoinensis HOM05D005482 ORTHO05D006502 1.4e-164 583.9 562 58.4
Migut.H02285 Erythranthe guttata HOM05D005482 ORTHO05D006502 8.5e-162 574.7 652 54.8
Sed0012268 Sechium edule HOM05D005482 ORTHO05D006502 2.5e-161 573.2 626 54.3
DCAR_003442 Daucus carota HOM05D005482 ORTHO05D006502 4.6e-160 568.9 619 53.5
Potri.007G011800 Populus trichocarpa HOM05D005482 ORTHO05D006502 6.7e-159 565.1 616 52.4
PGR102G1704 Punica granatum HOM05D005482 ORTHO05D006502 9.7e-158 561.2 627 53.3
Sc03g0000430 Simmondsia chinensis HOM05D005482 ORTHO05D006502 1.1e-156 557.8 622 52.6
Nn1g05603 Nelumbo nucifera HOM05D005482 ORTHO05D006502 5.3e-156 555.4 626 53.0
CANSAT01G3178 Cannabis sativa HOM05D005482 ORTHO05D006502 3.4e-155 552.7 695 48.6
RcHm_v2.0_Chr2g0110941 Rosa chinensis HOM05D005482 ORTHO05D006502 1.4e-153 547.4 587 54.2
Sabra07G0009200 Salix brachista HOM05D005482 ORTHO05D006502 1.4e-153 547.4 632 52.4
CARHR279520 Cardamine hirsuta HOM05D005482 ORTHO05D006502 1.4e-151 540.8 628 50.8
THA.LOC104798625 Tarenaya hassleriana HOM05D005482 ORTHO05D006502 2.3e-151 540.0 621 52.7
Cpa.g.sc55.13 Carica papaya HOM05D005482 ORTHO05D006502 1.5e-150 537.3 621 51.5
EL10Ac6g15187 Beta vulgaris HOM05D005482 ORTHO05D006502 3.3e-150 536.2 616 51.1
Aa31LG3G16620 Aethionema arabicum HOM05D005482 ORTHO05D006502 7.4e-150 535.0 628 52.2
MBI16_g31257_MAGBIO Magnolia biondii HOM05D005482 ORTHO05D006502 7.4e-150 535.0 623 51.2
Thhalv10003865m.g Eutrema salsugineum HOM05D005482 ORTHO05D006502 3.1e-148 529.6 623 50.2
FAN26G3253 Fragaria x ananassa HOM05D005482 ORTHO05D006502 2.0e-147 526.9 593 52.8
HanXRQChr12g0368991 Helianthus annuus HOM05D005482 ORTHO05D006502 2.0e-147 526.9 640 52.8
CsaV3_6G044940 Cucumis sativus L. HOM05D005482 ORTHO05D006502 5.9e-147 525.4 633 50.4
PSO170G0154 Papaver somniferum HOM05D005482 ORTHO05D006502 5.0e-146 522.3 657 49.0
PSO210G6830 Papaver somniferum HOM05D005482 ORTHO05D006502 6.5e-146 521.9 639 50.4
Sp2g28640 Schrenkiella parvula HOM05D005482 ORTHO05D006502 8.5e-146 521.5 628 49.4
AT5G65540 Arabidopsis thaliana HOM05D005482 ORTHO05D006502 1.2e-144 517.7 633 49.1
Haze_03890 Corylus avellana HOM05D005482 ORTHO05D006502 3.6e-144 516.2 472 58.7
Atru.chr3.678 Acer truncatum HOM05D005482 ORTHO05D006502 1.4e-143 514.2 626 50.0
AL8G43140 Arabidopsis lyrata HOM05D005482 ORTHO05D006502 1.4e-143 514.2 626 49.8
Atru.chr3.724 Acer truncatum HOM05D005482 ORTHO05D006502 6.7e-143 511.9 626 49.8
Carub.0008s2640 Capsella rubella HOM05D005482 ORTHO05D006502 2.0e-142 510.4 627 49.0
SalBow3G1020 Salvia bowleyana HOM05D005482 ORTHO05D006502 2.0e-142 510.4 584 56.0
Lalb_Chr16g0381591 Lupinus albus HOM05D005482 ORTHO05D006502 2.2e-141 506.9 626 48.7
AUR62017985 Chenopodium quinoa HOM05D005482 ORTHO05D006502 9.1e-140 501.5 616 48.4
arahy.Tifrunner.gnm1.ann1.52LQAS Arachis hypogaea HOM05D005482 ORTHO05D006502 3.5e-139 499.6 677 45.8
arahy.Tifrunner.gnm1.ann1.HVQN9F Arachis hypogaea HOM05D005482 ORTHO05D006502 3.5e-139 499.6 677 45.8
Lsat_1_v5_gn_3_62981 Lactuca sativa HOM05D005482 ORTHO05D006502 5.0e-138 495.7 633 50.2
Aqoxy5G01366 Aquilegia oxysepala HOM05D005482 ORTHO05D006502 1.1e-137 494.6 632 49.8
Ah.03g139850 Amaranthus hybridus HOM05D005482 ORTHO05D006502 2.5e-137 493.4 618 48.2
Ciclev10025202m.g Citrus clementina HOM05D005482 ORTHO05D006502 5.5e-137 492.3 674 46.7
ClCG01G018310 Citrullus lanatus HOM05D005482 ORTHO05D006502 9.4e-137 491.5 628 48.7
Hund16521 Selenicereus undatus HOM05D005482 ORTHO05D006502 1.8e-135 487.3 619 48.8
Sabra15G0071300 Salix brachista HOM05D005482 ORTHO05D006502 4.0e-135 486.1 611 50.2
C03p60440 Brassica napus HOM05D005482 ORTHO05D006502 2.8e-133 479.9 631 47.9
BolC3t18305H Brassica oleracea HOM05D005482 ORTHO05D006502 2.8e-133 479.9 631 47.9
BraA06t26164Z Brassica rapa HOM05D005482 ORTHO05D006502 7.7e-131 471.9 636 45.9
A06p32390 Brassica napus HOM05D005482 ORTHO05D006502 8.5e-130 468.4 636 45.6
MELO3C007709.2 Cucumis melo HOM05D005482 ORTHO05D006502 3.2e-129 466.5 593 48.7
Psat3g169840 Pisum sativum HOM05D005482 ORTHO05D006502 2.7e-123 446.8 624 46.3
Actinidia24562 Actinidia chinensis HOM05D005482 ORTHO05D006502 1.7e-122 444.1 415 59.8
VMungo1215G0139 Vigna mungo HOM05D005482 ORTHO05D006502 3.8e-122 443.0 625 46.2
Lj2g0006088 Lotus japonicus HOM05D005482 ORTHO05D006502 1.1e-121 441.4 657 43.2
Ca_25228_v3 Cicer arietinum L. HOM05D005482 ORTHO05D006502 1.2e-120 438.0 619 45.7
Glyma.09G200000 Glycine max HOM05D005482 ORTHO05D006502 6.8e-119 432.2 639 44.4
Glyma.01G021600 Glycine max HOM05D005482 ORTHO05D006502 8.9e-119 431.8 628 44.9
ECA246G0291 Erigeron canadensis HOM05D005482 ORTHO05D006502 6.3e-117 425.6 463 53.6
Phvul.002G145800 Phaseolus vulgaris HOM05D005482 ORTHO05D006502 2.4e-116 423.7 623 45.3
Oeu017109.1 Olea europaea HOM05D005482 ORTHO05D006502 3.6e-112 409.8 426 55.4
HPP92_017563 Vanilla planifolia HOM05D005482 ORTHO05D006502 7.8e-107 392.1 625 43.2
unitig_736.g22591 Utricularia gibba HOM05D005482 ORTHO05D006502 6.2e-104 382.5 587 45.0
BcaC01g02786 Brassica carinata HOM05D005482 ORTHO05D006502 9.8e-102 375.2 660 41.8
Hma1.2p1_0369F.1_g137390 Hydrangea macrophylla HOM05D005482 ORTHO05D006502 4.1e-100 369.8 366 56.0
Medtr5g031750 Medicago truncatula HOM05D005482 ORTHO05D006502 3.9e-98 363.2 621 41.5
Os03g0802300 Oryza sativa ssp. japonica HOM05D005482 ORTHO05D006502 2.4e-84 317.4 555 39.5
Zm00001eb061260 Zea mays HOM05D005482 ORTHO05D006502 1.5e-81 308.1 539 40.3
GSVIVG01002523001 Vitis vinifera HOM05D005482 ORTHO05D006502 3.1e-71 273.9 310 49.7
GSVIVG01002660001 Vitis vinifera HOM05D005482 ORTHO05D006502 1.9e-68 264.6 236 63.6
TPR.G36831 Trifolium pratense HOM05D005482 ORTHO05D006502 3.0e-58 230.7 463 37.1
ATR0767G089 Amborella trichopoda HOM05D005482 ORTHO05D006502 4.3e-49 200.3 300 41.0
Pp3c20_16050 Physcomitrium patens HOM05D005482 ORTHO05D006502 9.0e-47 192.6 563 31.3
Solyc11g016980.3 Solanum lycopersicum HOM05D005482 ORTHO05D006502 3.2e-44 184.1 185 55.7
TPR.G7258 Trifolium pratense HOM05D005482 ORTHO05D006502 3.2e-44 184.1 288 41.7
TAR381G1343 Trochodendron aralioides HOM05D005482 ORTHO05D006502 5.7e-41 173.3 279 47.0
Haze_03887 Corylus avellana HOM05D005482 ORTHO05D006502 2.5e-36 157.9 149 59.7
Oeu017110.1 Olea europaea HOM05D005482 ORTHO05D006502 1.2e-35 155.6 153 57.5
Actinidia28819 Actinidia chinensis HOM05D000138 ORTHO05D000078 6.1e-35 153.3 502 30.1
CiPaw.10G105100 Carya illinoinensis HOM05D005482 ORTHO05D006502 3.5e-30 137.5 120 61.7
ECA246G4867 Erigeron canadensis HOM05D005482 ORTHO05D006502 1.0e-29 136.0 140 56.4
CDE07G0659 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 1.1e-28 132.5 183 44.3
AagrBONN_evm.TU.Sc2ySwM_117.475 Anthoceros agrestis HOM05D005482 ORTHO05D006502 4.2e-28 130.6 508 28.1
CiPaw.01G172300 Carya illinoinensis HOM05D005482 ORTHO05D006502 4.7e-27 127.1 155 51.0
Solyc01g056590.2 Solanum lycopersicum HOM05D005482 ORTHO05D006502 8.0e-27 126.3 136 53.7
CDE07G2034 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 1.8e-23 115.2 111 55.0
BcaC01g02797 Brassica carinata HOM05D005482 ORTHO05D006502 2.9e-21 107.8 134 44.8
BolC3t18285H Brassica oleracea HOM05D005482 ORTHO05D006502 6.5e-21 106.7 180 42.2
Mapoly0105s0033 Marchantia polymorpha HOM05D005482 ORTHO05D006502 8.5e-21 106.3 597 22.9
RcHm_v2.0_Chr2g0110871 Rosa chinensis HOM05D005482 ORTHO05D006502 5.5e-20 103.6 97 54.6
CiPaw.03G215800 Carya illinoinensis HOM05D005482 ORTHO05D006502 1.2e-19 102.4 80 63.8
C03p60240 Brassica napus HOM05D005482 ORTHO05D006502 1.8e-18 98.6 190 40.0
SMO203G0252 Selaginella moellendorffii HOM05D005482 ORTHO05D006502 1.8e-18 98.6 548 26.5
CDE07G1819 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 1.6e-14 85.5 71 54.9
CDE07G1566 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 2.0e-14 85.1 166 41.0
Solyc02g062815.1 Solanum lycopersicum HOM05D005482 ORTHO05D006502 1.9e-12 78.6 83 54.2
TAR375G0200 Trochodendron aralioides HOM05D005482 ORTHO05D006502 4.2e-12 77.4 94 56.4
ATR0767G001 Amborella trichopoda HOM05D005482 ORTHO05D006502 1.2e-11 75.9 159 39.6
BcaB04g20020 Brassica carinata HOM05D005482 ORTHO05D006502 2.7e-11 74.7 67 52.2
HanXRQChr04g0112001 Helianthus annuus HOM05D005482 ORTHO05D006502 4.0e-10 70.9 70 61.4
Sabra15G0079600 Salix brachista HOM05D005482 ORTHO05D006502 6.8e-10 70.1 83 49.4


User provided reference genes

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