Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g13520 Coffea canephora HOM05D006243 ORTHO05D007688 7.4e-229 797.0 433 100.0
Oeu012257.1 Olea europaea HOM05D006243 ORTHO05D007688 1.1e-144 517.3 429 71.6
Oeu032326.2 Olea europaea HOM05D006243 ORTHO05D007688 7.6e-141 504.6 416 71.4
SalBow3G2874 Salvia bowleyana HOM05D006243 ORTHO05D007688 7.6e-141 504.6 428 70.1
CSS0038083 Camellia sinensis var. sinensis HOM05D006243 ORTHO05D007688 2.2e-140 503.1 419 70.6
Peaxi162Scf00305g00613 Petunia axillaris HOM05D006243 ORTHO05D007688 1.9e-139 500.0 428 69.4
DCAR_014173 Daucus carota HOM05D006243 ORTHO05D007688 5.4e-139 498.4 428 68.5
GSVIVG01030779001 Vitis vinifera HOM05D006243 ORTHO05D007688 7.1e-139 498.0 428 69.6
CAN.G222.23 Capsicum annuum HOM05D006243 ORTHO05D007688 2.7e-138 496.1 430 68.6
Ciclev10011587m.g Citrus clementina HOM05D006243 ORTHO05D007688 1.5e-136 490.3 436 69.7
TAR629G1693 Trochodendron aralioides HOM05D006243 ORTHO05D007688 3.3e-136 489.2 444 67.6
Solyc11g011170.2 Solanum lycopersicum HOM05D006243 ORTHO05D007688 4.3e-136 488.8 429 68.5
PGSC0003DMG402015686 Solanum tuberosum HOM05D006243 ORTHO05D007688 7.3e-136 488.0 428 68.7
Sopen11g005930 Solanum pennellii HOM05D006243 ORTHO05D007688 2.8e-135 486.1 429 68.1
MSTRG.23392 Avicennia marina HOM05D006243 ORTHO05D007688 3.6e-135 485.7 431 67.1
Cfa007817 Carpinus fangiana HOM05D006243 ORTHO05D007688 4.4e-133 478.8 432 67.8
Haze_14258 Corylus avellana HOM05D006243 ORTHO05D007688 9.9e-133 477.6 429 67.6
Duzib133G1335 Durio zibethinus HOM05D006243 ORTHO05D007688 1.3e-132 477.2 418 67.7
Potri.017G129100 Populus trichocarpa HOM05D006243 ORTHO05D007688 1.7e-132 476.9 434 66.6
Migut.H02264 Erythranthe guttata HOM05D006243 ORTHO05D007688 2.9e-132 476.1 429 68.5
Thecc.04G115200 Theobroma cacao HOM05D006243 ORTHO05D007688 4.9e-132 475.3 418 68.2
Rhsim10G0177000 Rhododendron simsii HOM05D006243 ORTHO05D007688 7.1e-131 471.5 429 66.2
CANSAT64G2718 Cannabis sativa HOM05D006243 ORTHO05D007688 2.1e-130 469.9 429 65.7
Atru.chr1.1900 Acer truncatum HOM05D006243 ORTHO05D007688 3.5e-130 469.2 435 66.4
Cpa.g.sc67.47 Carica papaya HOM05D006243 ORTHO05D007688 1.0e-129 467.6 433 65.8
Nn4g24254 Nelumbo nucifera HOM05D006243 ORTHO05D007688 3.0e-129 466.1 441 65.3
CiPaw.03G071500 Carya illinoinensis HOM05D006243 ORTHO05D007688 3.9e-129 465.7 424 67.9
HanXRQChr13g0418351 Helianthus annuus HOM05D006243 ORTHO05D007688 4.3e-128 462.2 430 64.4
TWI53G0799 Tripterygium wilfordii HOM05D006243 ORTHO05D007688 4.3e-128 462.2 431 64.7
Actinidia06497 Actinidia chinensis HOM05D006243 ORTHO05D007688 7.3e-128 461.5 389 72.0
Prupe.3G161300 Prunus persica HOM05D006243 ORTHO05D007688 1.3e-127 460.7 435 66.9
vmacro07692 Vaccinium macrocarpon HOM05D006243 ORTHO05D007688 4.8e-127 458.8 469 58.4
Sabra17G0107600 Salix brachista HOM05D006243 ORTHO05D007688 8.1e-127 458.0 443 65.2
ECA246G3278 Erigeron canadensis HOM05D006243 ORTHO05D007688 1.1e-126 457.6 419 65.4
Lsat_1_v5_gn_3_64500 Lactuca sativa HOM05D006243 ORTHO05D007688 1.4e-126 457.2 454 59.7
MD09G1263800 Malus domestica HOM05D006243 ORTHO05D007688 1.4e-126 457.2 435 65.3
Manes.01G117900 Manihot esculenta HOM05D006243 ORTHO05D007688 1.4e-126 457.2 436 66.5
Gorai.001G088700 Gossypium raimondii HOM05D006243 ORTHO05D007688 2.4e-126 456.4 416 66.8
Gohir.A07G078300 Gossypium hirsutum HOM05D006243 ORTHO05D007688 6.9e-126 454.9 416 66.8
Gohir.D07G083100 Gossypium hirsutum HOM05D006243 ORTHO05D007688 7.6e-125 451.4 416 66.1
Lj4A263G87 Lonicera japonica HOM05D006243 ORTHO05D007688 1.4e-123 447.2 336 78.6
Nitab4.5_0000201g0240 Nicotiana tabacum HOM05D006243 ORTHO05D007688 1.6e-122 443.7 416 65.6
MD17G1259100 Malus domestica HOM05D006243 ORTHO05D007688 3.9e-121 439.1 436 63.1
FAN28G0309 Fragaria x ananassa HOM05D006243 ORTHO05D007688 5.1e-121 438.7 438 63.5
AUR62038703 Chenopodium quinoa HOM05D006243 ORTHO05D007688 6.7e-121 438.3 362 70.4
FvH4_1g28740 Fragaria vesca HOM05D006243 ORTHO05D007688 1.1e-120 437.6 438 63.0
FAN19G0552 Fragaria x ananassa HOM05D006243 ORTHO05D007688 3.3e-120 436.0 438 63.0
RcHm_v2.0_Chr3g0493131 Rosa chinensis HOM05D006243 ORTHO05D007688 7.4e-120 434.9 435 63.0
FAN26G0580 Fragaria x ananassa HOM05D006243 ORTHO05D007688 9.6e-120 434.5 438 62.6
Eucgr.J01597 Eucalyptus grandis HOM05D006243 ORTHO05D007688 2.1e-119 433.3 419 65.2
PSO017G3733 Papaver somniferum HOM05D006243 ORTHO05D007688 4.8e-119 432.2 436 62.4
AUR62018213 Chenopodium quinoa HOM05D006243 ORTHO05D007688 1.4e-118 430.6 362 69.1
Aqoxy3G00051 Aquilegia oxysepala HOM05D006243 ORTHO05D007688 4.0e-118 429.1 428 63.1
Sc10g0004760 Simmondsia chinensis HOM05D006243 ORTHO05D007688 1.2e-117 427.6 387 66.9
EL10Ac2g03168 Beta vulgaris HOM05D006243 ORTHO05D007688 2.6e-117 426.4 357 70.0
Aa31LG2G3000 Aethionema arabicum HOM05D006243 ORTHO05D007688 5.5e-115 418.7 402 65.7
Lalb_Chr10g0104381 Lupinus albus HOM05D006243 ORTHO05D007688 9.3e-115 417.9 373 67.8
ClCG05G011500 Citrullus lanatus HOM05D006243 ORTHO05D007688 1.2e-114 417.5 430 62.8
arahy.Tifrunner.gnm1.ann1.Y3W4B5 Arachis hypogaea HOM05D006243 ORTHO05D007688 2.1e-114 416.8 326 74.8
MELO3C020192.2 Cucumis melo HOM05D006243 ORTHO05D007688 2.7e-114 416.4 433 61.9
PSO478G0940 Papaver somniferum HOM05D006243 ORTHO05D007688 2.7e-114 416.4 429 61.1
COL.COLO4_10159 Corchorus olitorius HOM05D006243 ORTHO05D007688 1.0e-113 414.5 470 57.7
CsaV3_3G020810 Cucumis sativus L. HOM05D006243 ORTHO05D007688 1.0e-113 414.5 425 62.6
BcaB03g15275 Brassica carinata HOM05D006243 ORTHO05D007688 1.5e-112 410.6 360 71.7
Sp5g21350 Schrenkiella parvula HOM05D006243 ORTHO05D007688 2.5e-112 409.8 368 70.4
CARHR058210 Cardamine hirsuta HOM05D006243 ORTHO05D007688 1.3e-111 407.5 363 70.2
ATR0317G069 Amborella trichopoda HOM05D006243 ORTHO05D007688 2.1e-111 406.8 430 59.8
THA.LOC104805617 Tarenaya hassleriana HOM05D006243 ORTHO05D007688 3.7e-111 406.0 398 65.8
AL2G24050 Arabidopsis lyrata HOM05D006243 ORTHO05D007688 8.2e-111 404.8 369 69.6
BraA07t30960Z Brassica rapa HOM05D006243 ORTHO05D007688 8.2e-111 404.8 396 67.2
SGA_v2.0_scaffold108G30955 Striga asiatica HOM05D006243 ORTHO05D007688 8.2e-111 404.8 430 61.6
AT1G66330 Arabidopsis thaliana HOM05D006243 ORTHO05D007688 1.8e-110 403.7 325 75.7
Carub.0002s1234 Capsella rubella HOM05D006243 ORTHO05D007688 4.0e-110 402.5 377 67.4
Glyma.02G245300 Glycine max HOM05D006243 ORTHO05D007688 4.0e-110 402.5 391 62.9
Nitab4.5_0009518g0020 Nicotiana tabacum HOM05D006243 ORTHO05D007688 9.0e-110 401.4 416 61.8
BcaB05g24167 Brassica carinata HOM05D006243 ORTHO05D007688 1.5e-109 400.6 381 67.5
LjContig00141g0011202 Lotus japonicus HOM05D006243 ORTHO05D007688 2.0e-109 400.2 423 58.6
A07p33290 Brassica napus HOM05D006243 ORTHO05D007688 2.6e-109 399.8 397 66.8
Lalb_Chr17g0346141 Lupinus albus HOM05D006243 ORTHO05D007688 4.5e-109 399.1 372 65.9
Phvul.008G235800 Phaseolus vulgaris HOM05D006243 ORTHO05D007688 1.7e-108 397.1 393 62.1
BcaC03g14742 Brassica carinata HOM05D006243 ORTHO05D007688 2.2e-108 396.7 372 68.5
BolC2t08324H Brassica oleracea HOM05D006243 ORTHO05D007688 2.2e-108 396.7 372 68.5
BraA02t06418Z Brassica rapa HOM05D006243 ORTHO05D007688 2.9e-108 396.4 375 68.0
BcaC08g46068 Brassica carinata HOM05D006243 ORTHO05D007688 6.5e-108 395.2 401 65.8
Medtr5g078290 Medicago truncatula HOM05D006243 ORTHO05D007688 1.4e-107 394.0 407 60.9
C06p39620 Brassica napus HOM05D006243 ORTHO05D007688 1.6e-106 390.6 402 65.7
BolC6t39055H Brassica oleracea HOM05D006243 ORTHO05D007688 1.6e-106 390.6 402 65.7
C02p21930 Brassica napus HOM05D006243 ORTHO05D007688 1.0e-105 387.9 348 71.0
A02p13590 Brassica napus HOM05D006243 ORTHO05D007688 8.7e-105 384.8 351 70.1
CDE04G1800 Ceratophyllum demersum HOM05D006243 ORTHO05D007688 2.5e-104 383.3 421 60.1
Os05g0148700 Oryza sativa ssp. japonica HOM05D006243 ORTHO05D007688 2.5e-104 383.3 410 60.2
Zm00001eb165460 Zea mays HOM05D006243 ORTHO05D007688 3.7e-103 379.4 398 59.8
PGR004G2672 Punica granatum HOM05D006243 ORTHO05D007688 4.1e-102 375.9 324 72.5
HPP92_027416 Vanilla planifolia HOM05D006243 ORTHO05D007688 2.9e-100 369.8 380 61.8
Hund13108 Selenicereus undatus HOM05D006243 ORTHO05D007688 6.1e-98 362.1 259 73.7
TPR.G8275 Trifolium pratense HOM05D006243 ORTHO05D007688 3.9e-97 359.4 299 65.9
SEGI_26344 Sequoiadendron giganteum HOM05D006243 ORTHO05D007688 5.1e-97 359.0 314 68.2
unitig_736.g22596 Utricularia gibba HOM05D006243 ORTHO05D007688 1.5e-93 347.4 251 73.3
arahy.Tifrunner.gnm1.ann1.SFD8TD Arachis hypogaea HOM05D006243 ORTHO05D007688 5.9e-93 345.5 326 66.9
Glyma.14G215400 Glycine max HOM05D006243 ORTHO05D007688 2.0e-88 330.5 371 58.5
Ca_05826_v3 Cicer arietinum L. HOM05D006243 ORTHO05D007688 4.4e-88 329.3 413 53.5
Sed0013436 Sechium edule HOM05D006243 ORTHO05D007688 9.4e-83 311.6 357 59.1
Thhalv10018612m.g Eutrema salsugineum HOM05D006243 ORTHO05D007688 2.7e-82 310.1 296 68.9
Dinv28209 Davidia involucrata HOM05D006243 ORTHO05D007688 7.0e-70 268.9 254 67.7
Actinidia17213 Actinidia chinensis HOM05D006243 ORTHO05D007688 6.1e-66 255.8 198 71.7
Ah.10g032360 Amaranthus hybridus HOM05D006243 ORTHO05D007688 3.0e-65 253.4 412 40.8
MD17G1258600 Malus domestica HOM05D006243 ORTHO05D007688 1.4e-62 244.6 230 63.0
Mapoly0055s0114 Marchantia polymorpha HOM05D006243 ORTHO05D007688 1.2e-58 231.5 350 44.6
Psat2g047960 Pisum sativum HOM05D006243 ORTHO05D007688 1.5e-56 224.6 278 56.8
Pp3c5_8230 Physcomitrium patens HOM05D006243 ORTHO05D007688 3.5e-53 213.4 309 51.5
Pp3c16_1710 Physcomitrium patens HOM05D006243 ORTHO05D007688 5.0e-52 209.5 237 49.8
Pp3c25_7980 Physcomitrium patens HOM05D006243 ORTHO05D007688 4.3e-51 206.5 243 50.2
VMungo0647G1427 Vigna mungo HOM05D006243 ORTHO05D007688 6.2e-50 202.6 263 54.0
AagrBONN_evm.TU.Sc2ySwM_117.2468 Anthoceros agrestis HOM05D006243 ORTHO05D007688 8.9e-49 198.7 313 45.0
VMungo0647G1521 Vigna mungo HOM05D006243 ORTHO05D007688 2.2e-47 194.1 133 76.7
QL02p058075 Quercus lobata HOM05D006243 ORTHO05D007688 1.9e-43 181.0 217 59.4
SMO238G0021 Selaginella moellendorffii HOM05D006243 ORTHO05D007688 7.8e-37 159.1 247 39.3
Lsat_1_v5_gn_2_20381 Lactuca sativa HOM05D006243 ORTHO05D007688 3.9e-36 156.8 117 70.9
CBR_g27960 Chara braunii HOM05D006243 ORTHO05D007688 1.2e-34 151.8 248 39.1
RcHm_v2.0_Chr7g0216651 Rosa chinensis HOM05D006243 ORTHO05D007688 6.6e-28 129.4 77 85.7
Actinidia17214 Actinidia chinensis HOM05D006243 ORTHO05D007688 6.8e-25 119.4 160 53.8
unitig_736.g22595 Utricularia gibba HOM05D006243 ORTHO05D007688 2.6e-16 90.9 137 36.5
Lsat_1_v5_gn_9_50281 Lactuca sativa HOM05D006243 ORTHO05D007688 3.4e-16 90.5 60 73.3
Lsat_1_v5_gn_9_64341 Lactuca sativa HOM05D000326 ORTHO05D000312 6.2e-10 69.7 101 47.5
Hund13037 Selenicereus undatus HOM05D006243 ORTHO05D007688 1.2e-08 65.5 101 40.6


User provided reference genes

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