Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g13470 Coffea canephora HOM05D007303 ORTHO05D009231 1.8e-33 145.2 66 100.0
Cc09_g07100 Coffea canephora HOM05D007303 ORTHO05D009231 1.3e-15 85.9 45 84.4
Cc00_g04100 Coffea canephora HOM05D007303 ORTHO05D009231 3.1e-14 81.3 46 78.3
Cc06_g00200 Coffea canephora HOM05D007303 ORTHO05D009231 2.7e-13 78.2 46 80.4
Migut.L02050 Erythranthe guttata HOM05D007303 ORTHO05D009231 1.9e-11 72.0 46 73.9
Oeu026929.1 Olea europaea HOM05D007303 ORTHO05D009231 4.3e-11 70.9 46 71.7
PGR031G1377 Punica granatum HOM05D007303 ORTHO05D009231 1.2e-10 69.3 45 66.7
Sopen10g027350 Solanum pennellii HOM05D007303 ORTHO05D009231 3.6e-10 67.8 43 69.8
PGSC0003DMG400027701 Solanum tuberosum HOM05D007303 ORTHO05D009231 3.6e-10 67.8 43 69.8
Nitab4.5_0001215g0100 Nicotiana tabacum HOM05D007303 ORTHO05D009231 4.7e-10 67.4 43 69.8
Oeu007820.2 Olea europaea HOM05D007303 ORTHO05D009231 6.1e-10 67.0 46 69.6
CAN.G65.102 Capsicum annuum HOM05D007303 ORTHO05D009231 1.4e-09 65.9 43 65.1
Cpa.g.sc0.70 Carica papaya HOM05D007303 ORTHO05D009231 1.4e-09 65.9 43 69.8
Oeu035181.1 Olea europaea HOM05D007303 ORTHO05D009231 1.4e-09 65.9 46 69.6
Gohir.A10G152200 Gossypium hirsutum HOM05D007303 ORTHO05D009231 4.0e-09 64.3 41 73.2
Gohir.A10G152700 Gossypium hirsutum HOM05D007303 ORTHO05D009231 4.0e-09 64.3 41 73.2
Gohir.D10G113500 Gossypium hirsutum HOM05D007303 ORTHO05D009231 4.0e-09 64.3 41 73.2
Gohir.D10G114000 Gossypium hirsutum HOM05D007303 ORTHO05D009231 4.0e-09 64.3 41 73.2
Gorai.011G125300 Gossypium raimondii HOM05D007303 ORTHO05D009231 4.0e-09 64.3 41 73.2
Gorai.011G125800 Gossypium raimondii HOM05D007303 ORTHO05D009231 4.0e-09 64.3 41 73.2
CANSAT83G0001 Cannabis sativa HOM05D007303 ORTHO05D009231 6.8e-09 63.5 46 60.9
Cfa017000 Carpinus fangiana HOM05D007303 ORTHO05D009231 6.8e-09 63.5 41 68.3
MELO3C025258.2 Cucumis melo HOM05D007303 ORTHO05D009231 6.8e-09 63.5 42 66.7
CsaV3_4G027390 Cucumis sativus L. HOM05D007303 ORTHO05D009231 6.8e-09 63.5 42 66.7
arahy.Tifrunner.gnm1.ann1.RL3GXR Arachis hypogaea HOM05D007303 ORTHO05D009231 1.2e-08 62.8 36 77.8
arahy.Tifrunner.gnm1.ann1.ZQ7RI8 Arachis hypogaea HOM05D007303 ORTHO05D009231 1.2e-08 62.8 36 77.8
COL.COLO4_05680 Corchorus olitorius HOM05D007303 ORTHO05D009231 1.2e-08 62.8 43 65.1
Duzib151G0876 Durio zibethinus HOM05D007303 ORTHO05D009231 1.2e-08 62.8 43 62.8
Hma1.2p1_0174F.1_g076630 Hydrangea macrophylla HOM05D007303 ORTHO05D009231 1.2e-08 62.8 41 68.3
Manes.09G121600 Manihot esculenta HOM05D007303 ORTHO05D009231 1.5e-08 62.4 46 65.2
RcHm_v2.0_Chr3g0459881 Rosa chinensis HOM05D007303 ORTHO05D009231 1.5e-08 62.4 46 58.7
SalBow4G1964 Salvia bowleyana HOM05D007303 ORTHO05D009231 1.5e-08 62.4 49 61.2
SalBow4G2888 Salvia bowleyana HOM05D007303 ORTHO05D009231 1.5e-08 62.4 49 61.2
Thecc.04G147800 Theobroma cacao HOM05D007303 ORTHO05D009231 1.5e-08 62.4 37 75.7
TWI53G0471 Tripterygium wilfordii HOM05D007303 ORTHO05D009231 1.5e-08 62.4 42 66.7
ClCG04G006170 Citrullus lanatus HOM05D007303 ORTHO05D009231 2.0e-08 62.0 42 66.7
Hund19736 Selenicereus undatus HOM05D007303 ORTHO05D009231 2.0e-08 62.0 46 60.9
TAR633G2342 Trochodendron aralioides HOM05D007303 ORTHO05D009231 2.6e-08 61.6 40 67.5
CiPaw.10G166700 Carya illinoinensis HOM05D007303 ORTHO05D009231 3.4e-08 61.2 42 61.9
Ca_23107_v3 Cicer arietinum L. HOM05D007303 ORTHO05D009231 3.4e-08 61.2 42 61.9
Haze_21228 Corylus avellana HOM05D007303 ORTHO05D009231 3.4e-08 61.2 41 65.9
FAN05G5278 Fragaria x ananassa HOM05D007303 ORTHO05D009231 3.4e-08 61.2 46 58.7
FAN09G2915 Fragaria x ananassa HOM05D007303 ORTHO05D009231 3.4e-08 61.2 46 58.7
Medtr8g005360 Medicago truncatula HOM05D007303 ORTHO05D009231 3.4e-08 61.2 42 61.9
Phvul.008G079100 Phaseolus vulgaris HOM05D007303 ORTHO05D009231 3.4e-08 61.2 42 64.3
TWI74G1491 Tripterygium wilfordii HOM05D007303 ORTHO05D009231 3.4e-08 61.2 42 64.3
GSVIVG01010904001 Vitis vinifera HOM05D007303 ORTHO05D009231 3.4e-08 61.2 42 61.9
Prupe.6G297800 Prunus persica HOM05D007303 ORTHO05D009231 4.4e-08 60.8 43 60.5
Sed0004919 Sechium edule HOM05D007303 ORTHO05D009231 4.4e-08 60.8 42 64.3
Glyma.09G271600 Glycine max HOM05D007303 ORTHO05D009231 5.8e-08 60.5 42 61.9
Glyma.18G217700 Glycine max HOM05D007303 ORTHO05D009231 5.8e-08 60.5 42 61.9
Oeu028466.1 Olea europaea HOM05D007303 ORTHO05D009231 5.8e-08 60.5 46 63.0
FvH4_6g09420 Fragaria vesca HOM05D007303 ORTHO05D009231 7.5e-08 60.1 46 56.5
AUR62006451 Chenopodium quinoa HOM05D007303 ORTHO05D009231 1.3e-07 59.3 41 61.0
Lj3g0023771 Lotus japonicus HOM05D007303 ORTHO05D009231 1.3e-07 59.3 46 56.5
Eucgr.K01299 Eucalyptus grandis HOM05D007303 ORTHO05D009231 1.7e-07 58.9 41 65.9
FAN14G3833 Fragaria x ananassa HOM05D007303 ORTHO05D009231 1.7e-07 58.9 46 56.5
MD04G1177900 Malus domestica HOM05D007303 ORTHO05D009231 1.7e-07 58.9 36 69.4
MD12G1193500 Malus domestica HOM05D007303 ORTHO05D009231 1.7e-07 58.9 36 69.4
Sc20g0007240 Simmondsia chinensis HOM05D007303 ORTHO05D009231 1.7e-07 58.9 35 71.4
DCAR_023961 Daucus carota HOM05D007303 ORTHO05D009231 2.9e-07 58.2 35 71.4
Duzib212G0558 Durio zibethinus HOM05D007303 ORTHO05D009231 2.9e-07 58.2 43 62.8
Psat6g005160 Pisum sativum HOM05D007303 ORTHO05D009231 2.9e-07 58.2 40 60.0
Ah.15g089810 Amaranthus hybridus HOM05D007303 ORTHO05D009231 8.3e-07 56.6 33 72.7
BcaC09g47979 Brassica carinata HOM05D007303 ORTHO05D009231 1.1e-06 56.2 43 58.1
C05p59250 Brassica napus HOM05D007303 ORTHO05D009231 1.1e-06 56.2 43 58.1
BolC1t05499H Brassica oleracea HOM05D007303 ORTHO05D009231 1.1e-06 56.2 43 58.1
BolC5t34572H Brassica oleracea HOM05D007303 ORTHO05D009231 1.1e-06 56.2 43 58.1
BraA01t04340Z Brassica rapa HOM05D007303 ORTHO05D009231 1.1e-06 56.2 43 58.1
Aa31LG5G18650 Aethionema arabicum HOM05D007303 ORTHO05D009231 1.4e-06 55.8 43 58.1
ECA236G3381 Erigeron canadensis HOM05D007303 ORTHO05D009231 1.4e-06 55.8 30 76.7
Lsat_1_v5_gn_8_109701 Lactuca sativa HOM05D007303 ORTHO05D009231 1.9e-06 55.5 37 70.3
AT3G08610 Arabidopsis thaliana HOM05D007303 ORTHO05D009231 2.4e-06 55.1 43 55.8
BcaB04g18583 Brassica carinata HOM05D007303 ORTHO05D009231 2.4e-06 55.1 43 55.8
BcaB04g21249 Brassica carinata HOM05D007303 ORTHO05D009231 2.4e-06 55.1 41 58.5
BcaC05g29598 Brassica carinata HOM05D007303 ORTHO05D009231 2.4e-06 55.1 43 55.8
A05p40170 Brassica napus HOM05D007303 ORTHO05D009231 2.4e-06 55.1 43 55.8
BraA03t12812Z Brassica rapa HOM05D007303 ORTHO05D009231 2.4e-06 55.1 43 55.8
Thhalv10021979m.g Eutrema salsugineum HOM05D007303 ORTHO05D009231 2.4e-06 55.1 43 55.8
AL3G19590 Arabidopsis lyrata HOM05D007303 ORTHO05D009231 3.2e-06 54.7 43 55.8
Carub.0003s0774 Capsella rubella HOM05D007303 ORTHO05D009231 3.2e-06 54.7 43 55.8
CARHR082910 Cardamine hirsuta HOM05D007303 ORTHO05D009231 5.4e-06 53.9 43 55.8
PSO384G4262 Papaver somniferum HOM05D007303 ORTHO05D009231 5.4e-06 53.9 38 60.5
BcaC01g04187 Brassica carinata HOM05D007303 ORTHO05D009231 7.0e-06 53.5 36 63.9
BolC3t16676H Brassica oleracea HOM05D007303 ORTHO05D009231 7.0e-06 53.5 36 63.9
THA.LOC104816152 Tarenaya hassleriana HOM05D007303 ORTHO05D009231 9.2e-06 53.1 39 59.0
THA.LOC104820511 Tarenaya hassleriana HOM05D007303 ORTHO05D009231 9.2e-06 53.1 35 65.7


User provided reference genes

Program Settings