Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g13300 Coffea canephora HOM05D005365 ORTHO05D006910 0.0e+00 1989.2 1045 100.0
Dinv19044 Davidia involucrata HOM05D005365 ORTHO05D006910 0.0e+00 1246.9 1047 64.1
Solyc11g011370.2 Solanum lycopersicum HOM05D005365 ORTHO05D006910 0.0e+00 1241.9 1010 65.4
Sopen11g006160 Solanum pennellii HOM05D005365 ORTHO05D006910 0.0e+00 1237.2 1010 65.4
CSS0031268 Camellia sinensis var. sinensis HOM05D005365 ORTHO05D006910 0.0e+00 1236.1 1038 64.5
Lj2C520T1 Lonicera japonica HOM05D005365 ORTHO05D006910 0.0e+00 1235.7 1042 63.1
MSTRG.15661 Avicennia marina HOM05D005365 ORTHO05D006910 0.0e+00 1230.3 1045 63.4
Nitab4.5_0012785g0010 Nicotiana tabacum HOM05D005365 ORTHO05D006910 0.0e+00 1230.3 1047 63.3
TAR374G0610 Trochodendron aralioides HOM05D005365 ORTHO05D006910 0.0e+00 1229.5 1022 63.3
Actinidia06487 Actinidia chinensis HOM05D005365 ORTHO05D006910 0.0e+00 1228.0 1040 63.0
CAN.G222.54 Capsicum annuum HOM05D005365 ORTHO05D006910 0.0e+00 1224.5 1000 65.0
Peaxi162Scf00562g00038 Petunia axillaris HOM05D005365 ORTHO05D006910 0.0e+00 1219.5 1041 63.9
Cfa007794 Carpinus fangiana HOM05D005365 ORTHO05D006910 0.0e+00 1199.9 1029 62.7
GSVIVG01014028001 Vitis vinifera HOM05D005365 ORTHO05D006910 0.0e+00 1196.0 1039 62.6
Nn4g24353 Nelumbo nucifera HOM05D005365 ORTHO05D006910 0.0e+00 1192.6 1036 60.5
MD09G1270700 Malus domestica HOM05D005365 ORTHO05D006910 0.0e+00 1187.6 1045 61.8
QL02p059099 Quercus lobata HOM05D005365 ORTHO05D006910 0.0e+00 1182.9 1150 57.9
MD17G1268900 Malus domestica HOM05D005365 ORTHO05D006910 0.0e+00 1179.1 1029 62.9
Prupe.3G017700 Prunus persica HOM05D005365 ORTHO05D006910 0.0e+00 1176.4 1046 61.8
Hma1.2p1_1583F.1_g291990 Hydrangea macrophylla HOM05D005365 ORTHO05D006910 0.0e+00 1170.6 962 65.2
Gorai.007G187500 Gossypium raimondii HOM05D005365 ORTHO05D006910 0.0e+00 1168.3 1049 60.2
vmacro07709 Vaccinium macrocarpon HOM05D005365 ORTHO05D006910 0.0e+00 1168.3 1026 62.1
Cpa.g.sc116.71 Carica papaya HOM05D005365 ORTHO05D006910 0.0e+00 1165.2 1040 62.0
Ciclev10010965m.g Citrus clementina HOM05D005365 ORTHO05D006910 0.0e+00 1162.9 1005 62.6
Haze_14277 Corylus avellana HOM05D005365 ORTHO05D006910 0.0e+00 1162.9 1020 61.6
Potri.004G085500 Populus trichocarpa HOM05D005365 ORTHO05D006910 0.0e+00 1162.1 1052 60.7
TWI77G0914 Tripterygium wilfordii HOM05D005365 ORTHO05D006910 0.0e+00 1159.1 987 62.1
CSS0046739 Camellia sinensis var. sinensis HOM05D005365 ORTHO05D006910 0.0e+00 1154.8 1038 61.3
Migut.K00918 Erythranthe guttata HOM05D005365 ORTHO05D006910 0.0e+00 1154.8 1030 61.8
Duzib133G0311 Durio zibethinus HOM05D005365 ORTHO05D006910 0.0e+00 1154.4 1026 61.3
Glyma.11G215600 Glycine max HOM05D005365 ORTHO05D006910 0.0e+00 1146.0 1014 60.3
Thecc.04G055200 Theobroma cacao HOM05D005365 ORTHO05D006910 0.0e+00 1145.6 994 62.2
Atru.chr1.1986 Acer truncatum HOM05D005365 ORTHO05D006910 0.0e+00 1142.5 1036 60.1
arahy.Tifrunner.gnm1.ann1.WJY350 Arachis hypogaea HOM05D005365 ORTHO05D006910 0.0e+00 1142.5 1022 59.6
CiPaw.03G073200 Carya illinoinensis HOM05D005365 ORTHO05D006910 0.0e+00 1142.5 1049 60.5
PSO478G2448 Papaver somniferum HOM05D005365 ORTHO05D006910 0.0e+00 1141.3 1021 59.5
SGA_v2.0_scaffold45G17160 Striga asiatica HOM05D005365 ORTHO05D006910 0.0e+00 1141.3 1066 58.5
Glyma.18G041000 Glycine max HOM05D005365 ORTHO05D006910 0.0e+00 1137.5 1049 58.5
Manes.03G027200 Manihot esculenta HOM05D005365 ORTHO05D006910 0.0e+00 1134.8 1030 60.0
arahy.Tifrunner.gnm1.ann1.MH7SY7 Arachis hypogaea HOM05D005365 ORTHO05D006910 0.0e+00 1132.1 1022 58.9
PSO017G3744 Papaver somniferum HOM05D005365 ORTHO05D006910 0.0e+00 1131.3 1021 59.1
Ca_17092_v3 Cicer arietinum L. HOM05D005365 ORTHO05D006910 0.0e+00 1127.1 1023 59.5
FAN26G1336 Fragaria x ananassa HOM05D005365 ORTHO05D006910 0.0e+00 1122.8 1032 59.7
ECA238G2923 Erigeron canadensis HOM05D005365 ORTHO05D006910 0.0e+00 1120.5 1032 59.4
AUR62018225 Chenopodium quinoa HOM05D005365 ORTHO05D006910 0.0e+00 1119.8 1014 59.5
VMungo1383G2900 Vigna mungo HOM05D005365 ORTHO05D006910 0.0e+00 1119.8 1052 58.4
Lj6g0003323 Lotus japonicus HOM05D005365 ORTHO05D006910 0.0e+00 1115.5 975 60.1
RcHm_v2.0_Chr3g0491161 Rosa chinensis HOM05D005365 ORTHO05D006910 0.0e+00 1115.1 1052 59.4
AUR62037789 Chenopodium quinoa HOM05D005365 ORTHO05D006910 0.0e+00 1114.0 1016 59.4
Phvul.001G229600 Phaseolus vulgaris HOM05D005365 ORTHO05D006910 0.0e+00 1113.2 1052 58.5
EL10Ac2g03189 Beta vulgaris HOM05D005365 ORTHO05D006910 0.0e+00 1110.9 1042 58.5
Gohir.D11G174900 Gossypium hirsutum HOM05D005365 ORTHO05D006910 0.0e+00 1108.2 938 61.8
ClCG03G008820 Citrullus lanatus HOM05D005365 ORTHO05D006910 0.0e+00 1102.8 1027 58.7
Aa31LG9G17470 Aethionema arabicum HOM05D005365 ORTHO05D006910 0.0e+00 1099.7 1048 57.4
CsaV3_5G023940 Cucumis sativus L. HOM05D005365 ORTHO05D006910 0.0e+00 1098.2 1013 59.1
Aqoxy2G03929 Aquilegia oxysepala HOM05D005365 ORTHO05D006910 0.0e+00 1097.0 1052 55.9
Lalb_Chr15g0084951 Lupinus albus HOM05D005365 ORTHO05D006910 0.0e+00 1096.3 1035 58.7
Lsat_1_v5_gn_2_68700 Lactuca sativa HOM05D005365 ORTHO05D006910 0.0e+00 1095.5 1039 57.7
Medtr3g065300 Medicago truncatula HOM05D005365 ORTHO05D006910 0.0e+00 1093.2 1023 58.3
MELO3C022831.2 Cucumis melo HOM05D005365 ORTHO05D006910 0.0e+00 1092.0 1025 58.1
FAN19G1822 Fragaria x ananassa HOM05D005365 ORTHO05D006910 0.0e+00 1088.9 1010 59.1
CARHR215230 Cardamine hirsuta HOM05D005365 ORTHO05D006910 0.0e+00 1088.6 1040 56.8
CANSAT80G2352 Cannabis sativa HOM05D005365 ORTHO05D006910 0.0e+00 1087.8 1040 57.8
Eucgr.F02871 Eucalyptus grandis HOM05D005365 ORTHO05D006910 0.0e+00 1085.1 1050 57.1
THA.LOC104805627 Tarenaya hassleriana HOM05D005365 ORTHO05D006910 0.0e+00 1083.9 1056 57.4
Sp7g04480 Schrenkiella parvula HOM05D005365 ORTHO05D006910 0.0e+00 1082.4 1048 57.4
Thhalv10027629m.g Eutrema salsugineum HOM05D005365 ORTHO05D006910 0.0e+00 1081.2 1047 56.4
AL7G46400 Arabidopsis lyrata HOM05D005365 ORTHO05D006910 0.0e+00 1079.3 1044 56.3
Psat5g120520 Pisum sativum HOM05D005365 ORTHO05D006910 0.0e+00 1075.8 1011 57.5
PGR004G1341 Punica granatum HOM05D005365 ORTHO05D006910 0.0e+00 1075.8 1049 56.8
AT5G37630 Arabidopsis thaliana HOM05D005365 ORTHO05D006910 7.1e-312 1073.5 1044 56.7
Sabra04G0056600 Salix brachista HOM05D005365 ORTHO05D006910 2.1e-311 1072.4 1057 57.0
A04p10780 Brassica napus HOM05D005365 ORTHO05D006910 7.1e-310 1067.4 1047 56.6
BraA04t16742Z Brassica rapa HOM05D005365 ORTHO05D006910 7.1e-310 1067.4 1047 56.6
DCAR_028454 Daucus carota HOM05D005365 ORTHO05D006910 2.1e-309 1065.8 1050 57.3
Carub.0007s3279 Capsella rubella HOM05D005365 ORTHO05D006910 2.5e-307 1058.9 1053 56.0
Ca_17099_v3 Cicer arietinum L. HOM05D005365 ORTHO05D006910 2.4e-305 1052.4 1023 57.1
Hund13093 Selenicereus undatus HOM05D005365 ORTHO05D006910 7.6e-304 1047.3 1035 54.9
BcaC02g09592 Brassica carinata HOM05D005365 ORTHO05D006910 3.8e-303 1045.0 1049 55.0
BolC4t26020H Brassica oleracea HOM05D005365 ORTHO05D006910 8.4e-303 1043.9 1049 55.0
BcaB06g27110 Brassica carinata HOM05D005365 ORTHO05D006910 1.4e-302 1043.1 1046 55.7
C04p44500 Brassica napus HOM05D005365 ORTHO05D006910 3.9e-300 1035.0 1072 53.8
Nitab4.5_0000201g0010 Nicotiana tabacum HOM05D005365 ORTHO05D006910 9.3e-294 1013.8 929 59.6
ATR0753G168 Amborella trichopoda HOM05D005365 ORTHO05D006910 7.6e-288 994.2 1031 53.1
Zm00001eb379890 Zea mays HOM05D005365 ORTHO05D006910 9.6e-283 977.2 1051 51.2
MBI19_g22067_MAGBIO Magnolia biondii HOM05D005365 ORTHO05D006910 4.8e-274 948.3 1146 49.0
CDE05G1264 Ceratophyllum demersum HOM05D005365 ORTHO05D006910 7.4e-267 924.5 839 58.9
Ah.10g032430 Amaranthus hybridus HOM05D005365 ORTHO05D006910 3.6e-261 905.6 778 60.0
Sed0006074 Sechium edule HOM05D005365 ORTHO05D006910 7.9e-261 904.4 756 62.2
FvH4_1g30230 Fragaria vesca HOM05D005365 ORTHO05D006910 5.3e-257 891.7 749 61.8
Sc11g0004580 Simmondsia chinensis HOM05D005365 ORTHO05D006910 5.3e-257 891.7 748 61.6
FAN23G0266 Fragaria x ananassa HOM05D005365 ORTHO05D006910 4.5e-256 888.6 749 61.8
Rhsim10G0178300 Rhododendron simsii HOM05D005365 ORTHO05D006910 7.7e-256 887.9 1046 50.3
Gohir.A11G168700 Gossypium hirsutum HOM05D005365 ORTHO05D006910 8.5e-255 884.4 744 61.4
COL.COLO4_13431 Corchorus olitorius HOM05D005365 ORTHO05D006910 1.1e-230 804.3 1034 47.6
PGSC0003DMG400013306 Solanum tuberosum HOM05D005365 ORTHO05D006910 1.7e-223 780.4 668 64.5
Actinidia17204 Actinidia chinensis HOM05D005365 ORTHO05D006910 5.0e-223 778.9 642 63.4
unitig_0.g2645 Utricularia gibba HOM05D005365 ORTHO05D006910 3.6e-221 772.7 1024 45.0
Dinv28185 Davidia involucrata HOM05D005365 ORTHO05D006910 3.6e-213 746.1 558 70.1
Pp3c22_14670 Physcomitrium patens HOM05D005365 ORTHO05D006910 6.4e-194 682.2 1006 41.1
TPR.G24911 Trifolium pratense HOM05D005365 ORTHO05D006910 1.6e-189 667.5 560 61.2
HPP92_006138 Vanilla planifolia HOM05D005365 ORTHO05D006910 9.2e-185 651.7 608 56.6
SEGI_16018 Sequoiadendron giganteum HOM05D005365 ORTHO05D006910 2.0e-171 607.4 690 49.9
SMO367G0263 Selaginella moellendorffii HOM05D005365 ORTHO05D006910 1.9e-169 600.9 926 39.0
Mapoly0032s0119 Marchantia polymorpha HOM05D005365 ORTHO05D006910 7.9e-168 595.5 894 40.0
Thhalv10027679m.g Eutrema salsugineum HOM05D005365 ORTHO05D006910 9.7e-150 535.4 666 48.3
AagrBONN_evm.TU.Sc2ySwM_228.4009 Anthoceros agrestis HOM05D005365 ORTHO05D006910 3.7e-149 533.5 999 36.7
GSVIVG01038363001 Vitis vinifera HOM05D005365 ORTHO05D006910 1.8e-143 514.6 431 61.3
Oeu012492.1 Olea europaea HOM05D005365 ORTHO05D006910 7.5e-102 376.3 793 37.8
GSVIVG01038362001 Vitis vinifera HOM05D005365 ORTHO05D006910 3.7e-85 320.9 248 68.5
SEGI_18021 Sequoiadendron giganteum HOM05D005365 ORTHO05D006910 1.1e-84 319.3 319 53.0
Oeu012494.1 Olea europaea HOM05D005365 ORTHO05D006910 6.2e-80 303.5 249 66.3
SGA_v2.0_scaffold45G17195 Striga asiatica HOM05D005365 ORTHO05D006910 7.1e-76 290.0 351 47.0
MCO13G329 Micromonas commoda HOM05D005365 ORTHO05D006910 5.6e-73 280.4 935 27.8
Os06g0256000 Oryza sativa ssp. japonica HOM05D005365 ORTHO05D006910 1.4e-71 275.8 383 43.3
arahy.Tifrunner.gnm1.ann1.MFZI3Y Arachis hypogaea HOM05D005365 ORTHO05D006910 4.0e-71 274.2 232 58.6
CBR_g39392 Chara braunii HOM05D000019 ORTHO05D000048 5.8e-70 270.4 424 38.0
CDE05G3412 Ceratophyllum demersum HOM05D005365 ORTHO05D006910 1.6e-64 252.3 199 63.8
PRCOL_00005851 Prasinoderma coloniale HOM05D005365 ORTHO05D006910 3.4e-62 244.6 892 28.1
CAN.G691.4 Capsicum annuum HOM05D005365 ORTHO05D006910 4.4e-62 244.2 298 50.7
MBI19_g43231_MAGBIO Magnolia biondii HOM05D005365 ORTHO05D006910 7.6e-62 243.4 235 57.9
arahy.Tifrunner.gnm1.ann1.4TMU9W Arachis hypogaea HOM05D005365 ORTHO05D006910 1.6e-59 235.7 195 58.5
TPR.G674 Trifolium pratense HOM05D005365 ORTHO05D006910 3.9e-50 204.5 248 48.8
GSVIVG01030692001 Vitis vinifera HOM05D005365 ORTHO05D006910 1.3e-37 162.9 127 69.3
HPP92_006139 Vanilla planifolia HOM05D005365 ORTHO05D006910 1.7e-37 162.5 278 42.8
SGA_v2.0_scaffold45G17196 Striga asiatica HOM05D005365 ORTHO05D006910 3.2e-36 158.3 108 73.1
Nn1g00453 Nelumbo nucifera HOM05D005365 ORTHO05D006910 2.3e-18 99.0 64 67.2
Gorai.005G096400 Gossypium raimondii HOM05D005365 ORTHO05D015145 8.8e-18 97.1 68 70.6
Psat1g154520 Pisum sativum HOM05D005365 ORTHO05D006910 8.8e-18 97.1 81 60.5
Gohir.D04G112220 Gossypium hirsutum HOM05D005365 ORTHO05D006910 4.4e-17 94.7 67 70.1
GSVIVG01030691001 Vitis vinifera HOM05D005365 ORTHO05D006910 2.4e-15 89.0 70 62.9
Cfa023924 Carpinus fangiana HOM05D005365 ORTHO05D006910 1.3e-13 83.2 654 21.6
Psat7g195800 Pisum sativum HOM05D005365 ORTHO05D006910 7.2e-12 77.4 77 54.5
SEGI_04861 Sequoiadendron giganteum HOM05D005365 ORTHO05D006910 9.4e-12 77.0 174 35.6
TPR.G7041 Trifolium pratense HOM05D005365 ORTHO05D006910 1.8e-10 72.8 51 70.6
Cre08.g362500 Chlamydomonas reinhardtii HOM05D005365 ORTHO05D006910 2.6e-09 68.9 482 22.0
Gohir.D09G013833 Gossypium hirsutum HOM05D005365 ORTHO05D015145 1.3e-08 66.6 45 71.1
Thhalv10028211m.g Eutrema salsugineum HOM05D005365 ORTHO05D006910 1.8e-07 62.8 60 51.7
SEGI_36380 Sequoiadendron giganteum HOM05D005365 ORTHO05D006910 1.6e-06 59.7 47 53.2


User provided reference genes

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