Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g13240 Coffea canephora HOM05D004924 ORTHO05D005896 5.3e-83 310.8 142 100.0
Hma1.2p1_0158F.1_g070040 Hydrangea macrophylla HOM05D004924 ORTHO05D005896 1.1e-69 266.5 142 83.8
Potri.017G131900 Populus trichocarpa HOM05D004924 ORTHO05D005896 2.1e-68 262.3 137 81.8
Oeu062709.1 Olea europaea HOM05D004924 ORTHO05D005896 3.7e-68 261.5 142 78.2
Sopen11g006240 Solanum pennellii HOM05D004924 ORTHO05D005896 1.1e-67 260.0 142 79.6
Actinidia28798 Actinidia chinensis HOM05D004924 ORTHO05D005896 3.1e-67 258.5 134 80.6
Solyc11g011450.2 Solanum lycopersicum HOM05D004924 ORTHO05D005896 3.1e-67 258.5 142 78.9
PGSC0003DMG400013239 Solanum tuberosum HOM05D004924 ORTHO05D005896 3.1e-67 258.5 142 78.9
vmacro18525 Vaccinium macrocarpon HOM05D004924 ORTHO05D005896 1.5e-66 256.1 134 81.3
Nitab4.5_0001650g0010 Nicotiana tabacum HOM05D004924 ORTHO05D005896 2.0e-66 255.8 142 78.2
TWI53G1907 Tripterygium wilfordii HOM05D004924 ORTHO05D005896 5.8e-66 254.2 142 76.1
Atru.chr1.1951 Acer truncatum HOM05D004924 ORTHO05D005896 1.0e-65 253.4 133 80.5
CAN.G222.65 Capsicum annuum HOM05D004924 ORTHO05D005896 1.0e-65 253.4 139 77.7
Manes.01G120100 Manihot esculenta HOM05D004924 ORTHO05D005896 1.3e-65 253.1 135 78.5
Lsat_1_v5_gn_2_68260 Lactuca sativa HOM05D004924 ORTHO05D005896 2.2e-65 252.3 134 79.9
Oeu062710.1 Olea europaea HOM05D004924 ORTHO05D005896 4.9e-65 251.1 142 75.4
QL02p059388 Quercus lobata HOM05D004924 ORTHO05D005896 8.4e-65 250.4 134 79.9
QL02p059397 Quercus lobata HOM05D004924 ORTHO05D005896 1.1e-64 250.0 134 79.9
ECA238G2739 Erigeron canadensis HOM05D004924 ORTHO05D005896 1.4e-64 249.6 131 80.2
CSS0001998 Camellia sinensis var. sinensis HOM05D004924 ORTHO05D005896 1.9e-64 249.2 128 82.8
CiPaw.03G074000 Carya illinoinensis HOM05D004924 ORTHO05D005896 1.9e-64 249.2 135 78.5
Duzib133G0699 Durio zibethinus HOM05D004924 ORTHO05D005896 1.9e-64 249.2 134 77.6
CiPaw.03G073900 Carya illinoinensis HOM05D004924 ORTHO05D005896 2.5e-64 248.8 135 77.8
Thecc.04G063500 Theobroma cacao HOM05D004924 ORTHO05D005896 3.2e-64 248.4 134 76.1
Cfa007789 Carpinus fangiana HOM05D004924 ORTHO05D005896 4.2e-64 248.1 141 74.5
DCAR_011635 Daucus carota HOM05D004924 ORTHO05D005896 4.2e-64 248.1 139 74.8
Cfa007788 Carpinus fangiana HOM05D004924 ORTHO05D005896 5.5e-64 247.7 141 74.5
COL.COLO4_17898 Corchorus olitorius HOM05D004924 ORTHO05D005896 5.5e-64 247.7 138 73.2
TAR622G1008 Trochodendron aralioides HOM05D004924 ORTHO05D005896 5.5e-64 247.7 135 77.0
Nn3g18375 Nelumbo nucifera HOM05D004924 ORTHO05D005896 7.1e-64 247.3 142 75.4
Haze_14284 Corylus avellana HOM05D004924 ORTHO05D005896 1.6e-63 246.1 135 78.5
Cpa.g.sc116.75 Carica papaya HOM05D004924 ORTHO05D005896 2.7e-63 245.4 129 78.3
Peaxi162Scf00464g00014 Petunia axillaris HOM05D004924 ORTHO05D005896 2.7e-63 245.4 142 75.4
Cfa007787 Carpinus fangiana HOM05D004924 ORTHO05D005896 3.5e-63 245.0 141 73.8
MSTRG.11290 Avicennia marina HOM05D004924 ORTHO05D005896 4.6e-63 244.6 142 73.9
Eucgr.F02876 Eucalyptus grandis HOM05D004924 ORTHO05D005896 7.9e-63 243.8 141 71.6
FvH4_1g30100 Fragaria vesca HOM05D004924 ORTHO05D005896 7.9e-63 243.8 135 74.8
Gorai.004G266800 Gossypium raimondii HOM05D004924 ORTHO05D005896 7.9e-63 243.8 135 74.8
RcHm_v2.0_Chr3g0491731 Rosa chinensis HOM05D004924 ORTHO05D005896 7.9e-63 243.8 135 75.6
RcHm_v2.0_Chr3g0491661 Rosa chinensis HOM05D004924 ORTHO05D005896 1.0e-62 243.4 135 75.6
MSTRG.11286 Avicennia marina HOM05D004924 ORTHO05D005896 1.3e-62 243.0 142 73.2
ClCG08G009070 Citrullus lanatus HOM05D004924 ORTHO05D005896 1.3e-62 243.0 135 77.0
FAN16G2823 Fragaria x ananassa HOM05D004924 ORTHO05D005896 5.1e-62 241.1 135 74.1
MD09G1269800 Malus domestica HOM05D004924 ORTHO05D005896 5.1e-62 241.1 135 75.6
PSO017G6719 Papaver somniferum HOM05D004924 ORTHO05D005896 5.1e-62 241.1 130 79.2
Prupe.3G165600 Prunus persica HOM05D004924 ORTHO05D005896 5.1e-62 241.1 134 75.4
GSVIVG01021786001 Vitis vinifera HOM05D004924 ORTHO05D005896 8.7e-62 240.4 139 71.2
Ca_17087_v3 Cicer arietinum L. HOM05D004924 ORTHO05D005896 1.5e-61 239.6 135 74.8
Gohir.A08G229800 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.5e-61 239.6 135 73.3
Psat5g120000 Pisum sativum HOM05D004924 ORTHO05D005896 1.5e-61 239.6 135 74.1
SalBow3G4470 Salvia bowleyana HOM05D004924 ORTHO05D005896 1.5e-61 239.6 138 70.3
Gohir.D08G250200 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.9e-61 239.2 135 73.3
Potri.017G132500 Populus trichocarpa HOM05D004924 ORTHO05D005896 1.9e-61 239.2 134 76.9
FAN19G2011 Fragaria x ananassa HOM05D004924 ORTHO05D005896 3.3e-61 238.4 135 72.6
Gohir.A08G229900 Gossypium hirsutum HOM05D004924 ORTHO05D005896 3.3e-61 238.4 135 73.3
RcHm_v2.0_Chr3g0491901 Rosa chinensis HOM05D004924 ORTHO05D005896 4.3e-61 238.0 135 72.6
arahy.Tifrunner.gnm1.ann1.FH3EPN Arachis hypogaea HOM05D004924 ORTHO05D005896 5.7e-61 237.7 135 71.9
FvH4_1g27730 Fragaria vesca HOM05D004924 ORTHO05D005896 5.7e-61 237.7 134 73.1
Lj6g0022987 Lotus japonicus HOM05D004924 ORTHO05D005896 5.7e-61 237.7 132 75.0
Eucgr.F02877 Eucalyptus grandis HOM05D004924 ORTHO05D005896 9.7e-61 236.9 141 69.5
Glyma.18G041600 Glycine max HOM05D004924 ORTHO05D005896 9.7e-61 236.9 135 74.1
FAN23G2495 Fragaria x ananassa HOM05D004924 ORTHO05D005896 1.3e-60 236.5 135 73.3
Glyma.18G041500 Glycine max HOM05D004924 ORTHO05D005896 1.3e-60 236.5 142 71.1
Lalb_Chr15g0085011 Lupinus albus HOM05D004924 ORTHO05D005896 1.3e-60 236.5 135 72.6
Phvul.001G229100 Phaseolus vulgaris HOM05D004924 ORTHO05D005896 1.6e-60 236.1 135 73.3
CANSAT64G2411 Cannabis sativa HOM05D004924 ORTHO05D005896 2.8e-60 235.3 134 73.9
Migut.H02231 Erythranthe guttata HOM05D004924 ORTHO05D005896 2.8e-60 235.3 140 71.4
HanXRQChr14g0444631 Helianthus annuus HOM05D004924 ORTHO05D005896 2.8e-60 235.3 134 73.9
Sed0017700 Sechium edule HOM05D004924 ORTHO05D005896 3.7e-60 235.0 133 71.4
Sc11g0004600 Simmondsia chinensis HOM05D004924 ORTHO05D005896 3.7e-60 235.0 131 76.3
Medtr3g065140 Medicago truncatula HOM05D004924 ORTHO05D005896 4.8e-60 234.6 134 72.4
SGA_v2.0_scaffold108G30967 Striga asiatica HOM05D004924 ORTHO05D005896 4.8e-60 234.6 142 71.1
unitig_699.g19298 Utricularia gibba HOM05D004924 ORTHO05D005896 4.8e-60 234.6 134 73.9
MELO3C026504.2 Cucumis melo HOM05D004924 ORTHO05D005896 8.2e-60 233.8 135 72.6
CsaV3_6G036070 Cucumis sativus L. HOM05D004924 ORTHO05D005896 8.2e-60 233.8 135 71.9
VMungo1383G1490 Vigna mungo HOM05D004924 ORTHO05D005896 1.1e-59 233.4 135 73.3
Ciclev10013082m.g Citrus clementina HOM05D004924 ORTHO05D005896 1.4e-59 233.0 134 73.1
Lj2C517G6 Lonicera japonica HOM05D004924 ORTHO05D005896 1.4e-59 233.0 119 83.2
PGR004G0557 Punica granatum HOM05D004924 ORTHO05D005896 1.4e-59 233.0 131 75.6
FAN10G2899 Fragaria x ananassa HOM05D004924 ORTHO05D005896 6.9e-59 230.7 135 71.1
Psat5g119920 Pisum sativum HOM05D004924 ORTHO05D005896 6.9e-59 230.7 135 72.6
TPR.G23209 Trifolium pratense HOM05D004924 ORTHO05D005896 1.5e-58 229.6 134 72.4
CARHR196230 Cardamine hirsuta HOM05D004924 ORTHO05D005896 2.0e-58 229.2 134 71.6
Thhalv10016053m.g Eutrema salsugineum HOM05D004924 ORTHO05D005896 2.0e-58 229.2 134 70.9
Glyma.11G215100 Glycine max HOM05D004924 ORTHO05D005896 2.0e-58 229.2 127 75.6
RcHm_v2.0_Chr3g0491691 Rosa chinensis HOM05D004924 ORTHO05D005896 3.4e-58 228.4 135 70.4
AL6G27940 Arabidopsis lyrata HOM05D004924 ORTHO05D005896 5.9e-58 227.6 134 70.9
MBI19_g44856_MAGBIO Magnolia biondii HOM05D004924 ORTHO05D005896 5.9e-58 227.6 132 72.0
MD09G1269600 Malus domestica HOM05D004924 ORTHO05D005896 1.3e-57 226.5 135 72.6
A03p08080 Brassica napus HOM05D004924 ORTHO05D005896 5.0e-57 224.6 134 70.9
BraA03t10133Z Brassica rapa HOM05D004924 ORTHO05D005896 5.0e-57 224.6 134 70.9
Sabra17G0109900 Salix brachista HOM05D004924 ORTHO05D005896 6.5e-57 224.2 126 74.6
AT5G16940 Arabidopsis thaliana HOM05D004924 ORTHO05D005896 8.5e-57 223.8 134 68.7
BcaB01g04965 Brassica carinata HOM05D004924 ORTHO05D005896 1.1e-56 223.4 134 70.1
Sabra17G0109800 Salix brachista HOM05D004924 ORTHO05D005896 1.1e-56 223.4 120 80.0
THA.LOC104820884 Tarenaya hassleriana HOM05D004924 ORTHO05D005896 1.1e-56 223.4 131 71.8
Gohir.D08G250300 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.4e-56 223.0 121 75.2
Peaxi162Scf00464g00013 Petunia axillaris HOM05D004924 ORTHO05D005896 1.9e-56 222.6 181 58.6
EL10Ac3g05220 Beta vulgaris HOM05D004924 ORTHO05D005896 5.5e-56 221.1 131 70.2
Carub.0006s1515 Capsella rubella HOM05D004924 ORTHO05D005896 5.5e-56 221.1 134 67.9
Aa31LG11G12660 Aethionema arabicum HOM05D004924 ORTHO05D005896 7.2e-56 220.7 134 70.1
AUR62006044 Chenopodium quinoa HOM05D004924 ORTHO05D005896 1.2e-55 219.9 133 68.4
BcaB01g05238 Brassica carinata HOM05D004924 ORTHO05D005896 1.6e-55 219.5 133 69.2
AUR62035584 Chenopodium quinoa HOM05D004924 ORTHO05D005896 2.7e-55 218.8 133 67.7
Psat5g119960 Pisum sativum HOM05D004924 ORTHO05D005896 2.7e-55 218.8 135 71.1
Aqoxy2G04179 Aquilegia oxysepala HOM05D004924 ORTHO05D005896 4.6e-55 218.0 133 69.9
C03p09350 Brassica napus HOM05D004924 ORTHO05D005896 6.1e-55 217.6 133 68.4
MD17G1267700 Malus domestica HOM05D004924 ORTHO05D005896 6.1e-55 217.6 121 75.2
Potri.017G132000 Populus trichocarpa HOM05D004924 ORTHO05D005896 6.1e-55 217.6 126 73.8
SEGI_33705 Sequoiadendron giganteum HOM05D004924 ORTHO05D005896 1.0e-54 216.9 135 65.2
Zm00001eb099200 Zea mays HOM05D004924 ORTHO05D005896 1.3e-54 216.5 129 68.2
Lsat_1_v5_gn_3_63921 Lactuca sativa HOM05D004924 ORTHO05D005896 3.0e-54 215.3 128 71.1
ATR0753G109 Amborella trichopoda HOM05D004924 ORTHO05D005896 3.9e-54 214.9 130 68.5
Gorai.004G267000 Gossypium raimondii HOM05D004924 ORTHO05D005896 5.1e-54 214.5 121 73.6
BolC3t13429H Brassica oleracea HOM05D004924 ORTHO05D005896 6.7e-54 214.2 133 67.7
MELO3C022822.2 Cucumis melo HOM05D004924 ORTHO05D005896 1.9e-53 212.6 123 69.1
HanXRQChr15g0482911 Helianthus annuus HOM05D004924 ORTHO05D005896 7.4e-53 210.7 123 71.5
Os09g0397700 Oryza sativa ssp. japonica HOM05D004924 ORTHO05D005896 4.8e-52 208.0 129 67.4
Ah.13g070610 Amaranthus hybridus HOM05D004924 ORTHO05D005896 2.4e-51 205.7 131 64.9
ClCG03G008860 Citrullus lanatus HOM05D004924 ORTHO05D005896 4.1e-51 204.9 119 68.9
Ciclev10013505m.g Citrus clementina HOM05D004924 ORTHO05D005896 9.1e-51 203.8 126 67.5
Zm00001eb099210 Zea mays HOM05D004924 ORTHO05D005896 3.4e-50 201.8 129 64.3
Pp3c3_1640 Physcomitrium patens HOM05D004924 ORTHO05D005896 4.5e-50 201.4 134 64.9
CsaV3_5G023900 Cucumis sativus L. HOM05D004924 ORTHO05D005896 5.9e-50 201.1 116 69.8
MD17G1267500 Malus domestica HOM05D004924 ORTHO05D005896 1.3e-49 199.9 121 68.6
Gohir.A10G199166 Gossypium hirsutum HOM05D004924 ORTHO05D005896 2.5e-48 195.7 135 60.7
Mapoly0175s0005 Marchantia polymorpha HOM05D004924 ORTHO05D005896 1.6e-47 193.0 131 63.4
SMO134G0286 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 1.4e-46 189.9 130 60.8
Gohir.A04G085566 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.5e-45 186.4 132 63.6
Zm00001eb099190 Zea mays HOM05D004924 ORTHO05D005896 9.7e-45 183.7 101 73.3
SMO182G0004 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 3.7e-44 181.8 130 59.2
Zm00001eb099170 Zea mays HOM05D004924 ORTHO05D005896 4.8e-44 181.4 101 71.3
Glyma.11G214900 Glycine max HOM05D004924 ORTHO05D005896 1.4e-43 179.9 136 63.2
AagrBONN_evm.TU.Sc2ySwM_117.508 Anthoceros agrestis HOM05D004924 ORTHO05D005896 5.3e-43 177.9 129 55.8
Thecc.K0008300 Theobroma cacao HOM05D004924 ORTHO05D005896 6.9e-43 177.6 96 79.2
SMO134G0172 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 9.1e-43 177.2 130 57.7
Ah.13g070620 Amaranthus hybridus HOM05D004924 ORTHO05D005896 5.0e-41 171.4 128 60.2
Lj2C517T7 Lonicera japonica HOM05D004924 ORTHO05D005896 4.7e-39 164.9 104 74.0
AUR62006043 Chenopodium quinoa HOM05D004924 ORTHO05D005896 1.0e-38 163.7 116 61.2
AUR62035585 Chenopodium quinoa HOM05D004924 ORTHO05D005896 1.0e-38 163.7 129 57.4
MD09G1269100 Malus domestica HOM05D004924 ORTHO05D005896 3.7e-36 155.2 98 70.4
Gorai.004G266900 Gossypium raimondii HOM05D004924 ORTHO05D005896 5.3e-35 151.4 86 73.3
Nitab4.5_0006562g0060 Nicotiana tabacum HOM05D004924 ORTHO05D005896 5.3e-35 151.4 83 79.5
PRCOL_00006023 Prasinoderma coloniale HOM05D004924 ORTHO05D005896 1.2e-34 150.2 147 45.6
Lj1P958T70 Lonicera japonica HOM05D004924 ORTHO05D005896 1.1e-27 127.1 74 77.0
Gohir.A06G089850 Gossypium hirsutum HOM05D004924 ORTHO05D005896 2.0e-26 122.9 112 53.6
FAN28G0301 Fragaria x ananassa HOM05D004924 ORTHO05D005896 2.2e-25 119.4 70 68.6
Gohir.D08G250250 Gossypium hirsutum HOM05D004924 ORTHO05D005896 8.0e-23 110.9 63 74.6
Gohir.D06G065233 Gossypium hirsutum HOM05D004924 ORTHO05D005896 3.0e-22 109.0 86 59.3
Zm00001eb099180 Zea mays HOM05D004924 ORTHO05D005896 5.7e-21 104.8 80 56.2


User provided reference genes

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