Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g13220 Coffea canephora HOM05D003263 ORTHO05D004801 0.0e+00 1321.6 658 100.0
CSS0018871 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 0.0e+00 1196.4 658 88.6
TAR629G0765 Trochodendron aralioides HOM05D003263 ORTHO05D004801 0.0e+00 1196.4 658 89.2
Dinv19049 Davidia involucrata HOM05D003263 ORTHO05D004801 0.0e+00 1195.3 656 88.7
Actinidia35722 Actinidia chinensis HOM05D003263 ORTHO05D004801 0.0e+00 1194.5 658 88.3
SGA_v2.0_scaffold2G00947 Striga asiatica HOM05D003263 ORTHO05D004801 0.0e+00 1189.9 658 88.1
Prupe.3G165400 Prunus persica HOM05D003263 ORTHO05D004801 0.0e+00 1189.1 657 87.7
CiPaw.03G074100 Carya illinoinensis HOM05D003263 ORTHO05D004801 0.0e+00 1188.7 658 87.5
Haze_14285 Corylus avellana HOM05D003263 ORTHO05D004801 0.0e+00 1187.9 658 87.8
MSTRG.3699 Avicennia marina HOM05D003263 ORTHO05D004801 0.0e+00 1187.2 659 88.9
ClCG05G010610 Citrullus lanatus HOM05D003263 ORTHO05D004801 0.0e+00 1187.2 658 88.0
Manes.02G078500 Manihot esculenta HOM05D003263 ORTHO05D004801 0.0e+00 1187.2 658 87.5
Cfa007786 Carpinus fangiana HOM05D003263 ORTHO05D004801 0.0e+00 1184.5 658 87.5
CsaV3_3G017880 Cucumis sativus L. HOM05D003263 ORTHO05D004801 0.0e+00 1181.4 658 87.4
Solyc11g011470.2 Solanum lycopersicum HOM05D003263 ORTHO05D004801 0.0e+00 1181.4 656 87.7
QL02p059434 Quercus lobata HOM05D003263 ORTHO05D004801 0.0e+00 1180.6 657 87.7
FvH4_1g30070 Fragaria vesca HOM05D003263 ORTHO05D004801 0.0e+00 1180.2 658 86.9
MD09G1268900 Malus domestica HOM05D003263 ORTHO05D004801 0.0e+00 1180.2 657 87.5
FAN23G0774 Fragaria x ananassa HOM05D003263 ORTHO05D004801 0.0e+00 1179.9 656 87.0
Atru.chr1.2038 Acer truncatum HOM05D003263 ORTHO05D004801 0.0e+00 1179.1 658 87.2
Ciclev10019002m.g Citrus clementina HOM05D003263 ORTHO05D004801 0.0e+00 1179.1 657 87.8
Peaxi162Scf00464g00325 Petunia axillaris HOM05D003263 ORTHO05D004801 0.0e+00 1179.1 656 87.5
Sopen11g006260 Solanum pennellii HOM05D003263 ORTHO05D004801 0.0e+00 1179.1 656 87.5
MELO3C020331.2 Cucumis melo HOM05D003263 ORTHO05D004801 0.0e+00 1178.7 658 87.1
FAN26G0816 Fragaria x ananassa HOM05D003263 ORTHO05D004801 0.0e+00 1178.3 658 86.6
SalBow5G3125 Salvia bowleyana HOM05D003263 ORTHO05D004801 0.0e+00 1177.5 659 87.7
FAN19G0316 Fragaria x ananassa HOM05D003263 ORTHO05D004801 0.0e+00 1177.2 658 86.6
Potri.017G136133 Populus trichocarpa HOM05D003263 ORTHO05D004801 0.0e+00 1177.2 658 87.1
CAN.G222.62 Capsicum annuum HOM05D003263 ORTHO05D004801 0.0e+00 1176.4 656 87.2
MD17G1267300 Malus domestica HOM05D003263 ORTHO05D004801 0.0e+00 1176.0 657 87.1
MSTRG.15657 Avicennia marina HOM05D003263 ORTHO05D004801 0.0e+00 1175.6 657 87.1
RcHm_v2.0_Chr3g0491991 Rosa chinensis HOM05D003263 ORTHO05D004801 0.0e+00 1175.6 658 86.6
Nitab4.5_0011135g0010 Nicotiana tabacum HOM05D003263 ORTHO05D004801 0.0e+00 1175.2 656 87.3
Oeu030292.1 Olea europaea HOM05D003263 ORTHO05D004801 0.0e+00 1174.8 691 84.2
Sed0016313 Sechium edule HOM05D003263 ORTHO05D004801 0.0e+00 1174.5 658 87.1
TWI74G0116 Tripterygium wilfordii HOM05D003263 ORTHO05D004801 0.0e+00 1174.1 658 86.9
Potri.004G082800 Populus trichocarpa HOM05D003263 ORTHO05D004801 0.0e+00 1173.7 658 86.8
PGSC0003DMG400013309 Solanum tuberosum HOM05D003263 ORTHO05D004801 0.0e+00 1172.9 656 87.0
Aqoxy3G04075 Aquilegia oxysepala HOM05D003263 ORTHO05D004801 0.0e+00 1172.1 657 86.9
Rhsim08G0019700 Rhododendron simsii HOM05D003263 ORTHO05D004801 0.0e+00 1170.6 712 82.0
Migut.K00926 Erythranthe guttata HOM05D003263 ORTHO05D004801 0.0e+00 1169.5 660 86.7
Sed0005557 Sechium edule HOM05D003263 ORTHO05D004801 0.0e+00 1168.7 658 86.3
TWI77G0544 Tripterygium wilfordii HOM05D003263 ORTHO05D004801 0.0e+00 1167.9 658 86.3
arahy.Tifrunner.gnm1.ann1.AUXW6G Arachis hypogaea HOM05D003263 ORTHO05D004801 0.0e+00 1166.0 656 86.0
COL.COLO4_13315 Corchorus olitorius HOM05D003263 ORTHO05D004801 0.0e+00 1165.2 658 86.8
DCAR_014159 Daucus carota HOM05D003263 ORTHO05D004801 0.0e+00 1162.1 658 85.9
Cpa.g.sc116.77 Carica papaya HOM05D003263 ORTHO05D004801 0.0e+00 1161.0 657 85.5
VMungo1383G2082 Vigna mungo HOM05D003263 ORTHO05D004801 0.0e+00 1161.0 658 85.3
Duzib138G0925 Durio zibethinus HOM05D003263 ORTHO05D004801 0.0e+00 1160.6 658 86.3
Phvul.001G229000 Phaseolus vulgaris HOM05D003263 ORTHO05D004801 0.0e+00 1160.2 658 85.7
CANSAT56G4352 Cannabis sativa HOM05D003263 ORTHO05D004801 0.0e+00 1159.1 657 85.8
HanXRQChr07g0191741 Helianthus annuus HOM05D003263 ORTHO05D004801 0.0e+00 1159.1 657 85.7
PSO017G4553 Papaver somniferum HOM05D003263 ORTHO05D004801 0.0e+00 1158.7 659 85.7
Gohir.D07G183900 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1158.3 658 86.5
Lj6g0025109 Lotus japonicus HOM05D003263 ORTHO05D004801 0.0e+00 1158.3 657 84.9
Hund13092 Selenicereus undatus HOM05D003263 ORTHO05D004801 0.0e+00 1157.9 657 86.0
Gorai.001G204300 Gossypium raimondii HOM05D003263 ORTHO05D004801 0.0e+00 1156.7 658 86.5
HanXRQChr14g0444641 Helianthus annuus HOM05D003263 ORTHO05D004801 0.0e+00 1156.7 657 85.5
PSO478G1645 Papaver somniferum HOM05D003263 ORTHO05D004801 0.0e+00 1156.7 659 85.3
Gohir.A07G176600 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1154.8 658 86.3
ECA238G3173 Erigeron canadensis HOM05D003263 ORTHO05D004801 0.0e+00 1154.4 657 85.1
Glyma.18G041700 Glycine max HOM05D003263 ORTHO05D004801 0.0e+00 1154.4 656 85.2
Duzib133G1400 Durio zibethinus HOM05D003263 ORTHO05D004801 0.0e+00 1154.0 659 86.2
Eucgr.J01621 Eucalyptus grandis HOM05D003263 ORTHO05D004801 0.0e+00 1152.1 659 85.3
Thecc.04G063600 Theobroma cacao HOM05D003263 ORTHO05D004801 0.0e+00 1151.7 658 86.3
Glyma.11G214800 Glycine max HOM05D003263 ORTHO05D004801 0.0e+00 1149.8 658 85.0
Zm00001eb216210 Zea mays HOM05D003263 ORTHO05D004801 0.0e+00 1149.8 657 84.2
unitig_748.g8633 Utricularia gibba HOM05D003263 ORTHO05D004801 0.0e+00 1147.1 663 84.3
AUR62037782 Chenopodium quinoa HOM05D003263 ORTHO05D004801 0.0e+00 1146.3 657 84.2
Lalb_Chr18g0053541 Lupinus albus HOM05D003263 ORTHO05D004801 0.0e+00 1146.3 657 84.2
PGR042G3530 Punica granatum HOM05D003263 ORTHO05D004801 0.0e+00 1146.3 658 85.9
EL10Ac2g03207 Beta vulgaris HOM05D003263 ORTHO05D004801 0.0e+00 1144.4 657 84.5
Os03g0713400 Oryza sativa ssp. japonica HOM05D003263 ORTHO05D004801 0.0e+00 1143.3 657 84.2
Zm00001eb055050 Zea mays HOM05D003263 ORTHO05D004801 0.0e+00 1142.5 657 83.9
Ah.10g032470 Amaranthus hybridus HOM05D003263 ORTHO05D004801 0.0e+00 1141.7 651 85.1
Sc14g0006900 Simmondsia chinensis HOM05D003263 ORTHO05D004801 0.0e+00 1139.8 658 85.1
Manes.01G120700 Manihot esculenta HOM05D003263 ORTHO05D004801 0.0e+00 1137.5 658 85.1
Ah.10g032480 Amaranthus hybridus HOM05D003263 ORTHO05D004801 0.0e+00 1136.3 657 84.2
Medtr3g065130 Medicago truncatula HOM05D003263 ORTHO05D004801 0.0e+00 1134.0 657 83.4
Gohir.D07G176300 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1133.2 658 83.6
Gorai.001G197100 Gossypium raimondii HOM05D003263 ORTHO05D004801 0.0e+00 1132.9 658 83.4
Psat5g119880 Pisum sativum HOM05D003263 ORTHO05D004801 0.0e+00 1131.3 657 83.4
Ca_17086_v3 Cicer arietinum L. HOM05D003263 ORTHO05D004801 0.0e+00 1130.9 658 83.4
TPR.G23206 Trifolium pratense HOM05D003263 ORTHO05D004801 0.0e+00 1129.4 657 83.3
Gohir.A07G170100 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1129.0 658 83.4
Lsat_1_v5_gn_3_63961 Lactuca sativa HOM05D003263 ORTHO05D004801 0.0e+00 1128.6 659 82.7
Migut.H02232 Erythranthe guttata HOM05D003263 ORTHO05D004801 0.0e+00 1127.5 661 84.6
HPP92_020298 Vanilla planifolia HOM05D003263 ORTHO05D004801 0.0e+00 1125.9 658 82.7
CARHR215400 Cardamine hirsuta HOM05D003263 ORTHO05D004801 0.0e+00 1116.7 656 82.5
C04p44380 Brassica napus HOM05D003263 ORTHO05D004801 0.0e+00 1114.4 657 81.9
BcaB06g27086 Brassica carinata HOM05D003263 ORTHO05D004801 0.0e+00 1114.0 657 81.9
AT5G37510 Arabidopsis thaliana HOM05D003263 ORTHO05D004801 0.0e+00 1112.8 657 81.9
Carub.0007s3268 Capsella rubella HOM05D003263 ORTHO05D004801 0.0e+00 1112.4 657 81.9
A04p10660 Brassica napus HOM05D003263 ORTHO05D004801 0.0e+00 1111.3 657 81.7
arahy.Tifrunner.gnm1.ann1.ZZ0CH2 Arachis hypogaea HOM05D003263 ORTHO05D004801 0.0e+00 1110.9 753 74.6
BraA04t16733Z Brassica rapa HOM05D003263 ORTHO05D004801 0.0e+00 1110.1 657 81.6
BcaC02g09578 Brassica carinata HOM05D003263 ORTHO05D004801 0.0e+00 1108.6 657 81.4
BolC4t26009H Brassica oleracea HOM05D003263 ORTHO05D004801 0.0e+00 1108.6 657 81.4
SGA_v2.0_scaffold108G30966 Striga asiatica HOM05D003263 ORTHO05D004801 0.0e+00 1107.8 659 82.9
Aa31LG9G17530 Aethionema arabicum HOM05D003263 ORTHO05D004801 0.0e+00 1107.0 657 81.1
Thhalv10027640m.g Eutrema salsugineum HOM05D003263 ORTHO05D004801 0.0e+00 1107.0 657 81.3
CDE05G1320 Ceratophyllum demersum HOM05D003263 ORTHO05D004801 0.0e+00 1106.7 658 82.5
AL1G43210 Arabidopsis lyrata HOM05D003263 ORTHO05D004801 0.0e+00 1105.9 657 81.1
GSVIVG01030914001 Vitis vinifera HOM05D003263 ORTHO05D004801 0.0e+00 1105.9 658 83.3
THA.LOC104805635 Tarenaya hassleriana HOM05D003263 ORTHO05D004801 0.0e+00 1102.4 659 81.8
Aa31LG9G17520 Aethionema arabicum HOM05D003263 ORTHO05D004801 0.0e+00 1100.1 663 80.4
THA.LOC104822242 Tarenaya hassleriana HOM05D003263 ORTHO05D004801 0.0e+00 1099.3 658 81.3
AL7G46270 Arabidopsis lyrata HOM05D003263 ORTHO05D004801 0.0e+00 1088.9 690 77.5
AUR62042225 Chenopodium quinoa HOM05D003263 ORTHO05D004801 0.0e+00 1086.2 657 80.7
ATR0118G003 Amborella trichopoda HOM05D003263 ORTHO05D004801 4.5e-312 1073.9 660 78.8
SHI30113 Sapria himalayana HOM05D003263 ORTHO05D004801 5.8e-310 1067.0 659 79.4
Nitab4.5_0006562g0010 Nicotiana tabacum HOM05D003263 ORTHO05D004801 1.9e-308 1062.0 576 89.1
Lalb_Chr15g0085021 Lupinus albus HOM05D003263 ORTHO05D004801 5.4e-308 1060.4 657 79.0
MBI19_g09384_MAGBIO Magnolia biondii HOM05D003263 ORTHO05D004801 9.6e-305 1049.7 969 58.8
vmacro18524 Vaccinium macrocarpon HOM05D003263 ORTHO05D004801 4.9e-301 1037.3 658 79.3
CDE05G1041 Ceratophyllum demersum HOM05D003263 ORTHO05D004801 4.2e-300 1034.2 658 77.7
Nn4g24447 Nelumbo nucifera HOM05D003263 ORTHO05D004801 6.5e-285 983.8 528 89.6
SMO331G0029 Selaginella moellendorffii HOM05D003263 ORTHO05D004801 2.4e-279 965.3 658 69.1
Pp3c19_19270 Physcomitrium patens HOM05D003263 ORTHO05D004801 5.0e-277 957.6 658 70.8
Dinv28178 Davidia involucrata HOM05D003263 ORTHO05D004801 1.1e-276 956.4 658 75.1
Pp3c1_34100 Physcomitrium patens HOM05D003263 ORTHO05D004801 4.2e-276 954.5 660 70.8
Pp3c1_34110 Physcomitrium patens HOM05D003263 ORTHO05D004801 4.2e-276 954.5 660 70.8
Pp3c1_34140 Physcomitrium patens HOM05D003263 ORTHO05D004801 1.6e-275 952.6 660 70.6
AagrBONN_evm.TU.Sc2ySwM_228.2430 Anthoceros agrestis HOM05D003263 ORTHO05D004801 3.6e-275 951.4 660 70.2
Mapoly0153s0030 Marchantia polymorpha HOM05D003263 ORTHO05D004801 1.3e-272 943.0 662 68.9
arahy.Tifrunner.gnm1.ann1.5H82NF Arachis hypogaea HOM05D003263 ORTHO05D004801 1.8e-258 896.0 593 75.9
arahy.Tifrunner.gnm1.ann1.RIP12T Arachis hypogaea HOM05D003263 ORTHO05D004801 9.1e-255 883.6 593 75.4
CBR_g6354 Chara braunii HOM05D003263 ORTHO05D004801 5.9e-246 854.4 662 62.2
Cre12.g535950 Chlamydomonas reinhardtii HOM05D003263 ORTHO05D004801 5.8e-225 784.6 661 57.9
MCO08G340 Micromonas commoda HOM05D003263 ORTHO05D004801 5.0e-221 771.5 663 58.1
PRCOL_00000346 Prasinoderma coloniale HOM05D003263 ORTHO05D004801 6.2e-211 738.0 656 57.6
Cfa025667 Carpinus fangiana HOM05D003263 ORTHO05D004801 4.3e-196 688.7 669 52.6
TAR371G0371 Trochodendron aralioides HOM05D003263 ORTHO05D004801 3.1e-186 656.0 582 62.2
Haze_26802 Corylus avellana HOM05D003263 ORTHO05D004801 2.1e-171 606.7 694 47.0
arahy.Tifrunner.gnm1.ann1.HY7M04 Arachis hypogaea HOM05D000164 ORTHO05D004801 4.8e-163 578.9 361 78.1
SpUN1596_0010 Schrenkiella parvula HOM05D003263 ORTHO05D004801 1.4e-157 560.8 305 87.5
arahy.Tifrunner.gnm1.ann1.Z93KCA Arachis hypogaea HOM05D003263 ORTHO05D004801 3.6e-134 483.0 301 81.1
Oeu062706.1 Olea europaea HOM05D003263 ORTHO05D004801 1.7e-131 474.2 309 76.4
Oeu062704.1 Olea europaea HOM05D003263 ORTHO05D004801 2.2e-131 473.8 233 97.9
Thecc.K0008100 Theobroma cacao HOM05D003263 ORTHO05D004801 1.2e-118 431.4 211 98.1
SpUn1854_0010 Schrenkiella parvula HOM05D003263 ORTHO05D004801 7.5e-116 422.2 294 69.4
Potri.017G136950 Populus trichocarpa HOM05D003263 ORTHO05D004801 3.9e-112 409.8 236 83.9
Sabra17G0054900 Salix brachista HOM05D003263 ORTHO05D004801 6.2e-102 375.9 241 78.0
Thecc.K0008200 Theobroma cacao HOM05D003263 ORTHO05D004801 4.3e-95 353.2 219 80.4
CSS0049015 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 1.8e-93 347.8 298 64.1
CSS0039899 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 2.9e-91 340.5 297 63.0
Oeu039332.1 Olea europaea HOM05D003263 ORTHO05D004801 4.0e-77 293.5 172 82.6
Eucgr.J01637 Eucalyptus grandis HOM05D003263 ORTHO05D004801 4.5e-68 263.5 135 92.6
Haze_27240 Corylus avellana HOM05D003263 ORTHO05D004801 1.4e-66 258.5 364 39.6
arahy.Tifrunner.gnm1.ann1.VKQW11 Arachis hypogaea HOM05D003263 ORTHO05D004801 3.5e-65 253.8 126 95.2
MD16G1264300 Malus domestica HOM05D003263 ORTHO05D004801 1.2e-60 238.8 260 53.1
arahy.Tifrunner.gnm1.ann1.SN393R Arachis hypogaea HOM05D003263 ORTHO05D004801 3.2e-58 230.7 114 94.7
SEGI_21193 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 3.4e-52 210.7 114 87.7
SEGI_05320 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 2.6e-44 184.5 104 84.6
Sabra17G0112400 Salix brachista HOM05D003263 ORTHO05D003497 5.5e-42 176.8 122 73.8
Actinidia28797 Actinidia chinensis HOM05D003263 ORTHO05D004801 3.1e-37 161.0 312 39.4
SEGI_04560 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 5.3e-37 160.2 89 84.3
VMungo0647G1524 Vigna mungo HOM05D003263 ORTHO05D004801 6.9e-37 159.8 102 69.6
CBR_g44347 Chara braunii HOM05D003263 ORTHO05D004801 7.9e-33 146.4 142 50.7
Ca_19082_v3 Cicer arietinum L. HOM05D003263 ORTHO05D004801 1.1e-29 136.0 83 79.5
Hund13091 Selenicereus undatus HOM05D003263 ORTHO05D004801 1.0e-27 129.4 105 61.9
MD16G1264400 Malus domestica HOM05D003263 ORTHO05D004801 7.2e-26 123.2 61 91.8
Hma1.2p1_1425F.1_g282850 Hydrangea macrophylla HOM05D003263 ORTHO05D004801 1.4e-24 119.0 99 64.6
QL04p097132 Quercus lobata HOM05D003263 ORTHO05D000041 9.1e-21 106.3 53 92.5
HanXRQChr17g0559491 Helianthus annuus HOM05D003263 ORTHO05D004801 1.6e-20 105.5 52 92.3
CBR_g26339 Chara braunii HOM05D004987 ORTHO05D005960 1.1e-18 99.4 203 30.5
CSS0022568 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 5.2e-16 90.5 47 87.2
QL08p053439 Quercus lobata HOM05D003263 ORTHO05D004801 2.0e-15 88.6 50 80.0
TPR.G18971 Trifolium pratense HOM05D003263 ORTHO05D004801 2.8e-14 84.7 56 75.0
Cc04_g05630 Coffea canephora HOM05D003263 ORTHO05D004801 2.0e-12 78.6 51 78.4
SEGI_40032 Sequoiadendron giganteum HOM05D003263 ORTHO05D024792 2.0e-12 78.6 42 88.1
TPR.G11234 Trifolium pratense HOM05D003263 ORTHO05D004801 5.0e-11 73.9 42 85.7
Cc00_g06720 Coffea canephora HOM05D003263 ORTHO05D004801 1.5e-10 72.4 38 92.1
Migut.M00197 Erythranthe guttata HOM05D003263 ORTHO05D004801 4.7e-09 67.4 54 64.8


User provided reference genes

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