Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g13210 Coffea canephora HOM05D002544 ORTHO05D007856 0.0e+00 1213.4 619 100.0
Dinv19050 Davidia involucrata HOM05D002544 ORTHO05D007856 7.8e-240 833.9 572 72.6
Hma1.2p1_0158F.1_g070010 Hydrangea macrophylla HOM05D002544 ORTHO05D007856 2.8e-237 825.5 571 71.8
GSVIVG01030701001 Vitis vinifera HOM05D002544 ORTHO05D007856 3.4e-235 818.5 572 69.9
Sopen11g006270 Solanum pennellii HOM05D002544 ORTHO05D007856 4.4e-235 818.1 572 71.0
Solyc11g011480.2 Solanum lycopersicum HOM05D002544 ORTHO05D007856 7.5e-235 817.4 572 71.0
Nitab4.5_0011135g0020 Nicotiana tabacum HOM05D002544 ORTHO05D007856 8.3e-234 813.9 571 70.6
CSS0008925 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D007856 1.4e-233 813.1 572 69.8
CAN.G222.63 Capsicum annuum HOM05D002544 ORTHO05D007856 2.7e-232 808.9 573 69.6
CSS0046327 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D007856 3.5e-232 808.5 572 69.6
Oeu030291.2 Olea europaea HOM05D002544 ORTHO05D007856 4.6e-232 808.1 576 70.1
Prupe.3G165300 Prunus persica HOM05D002544 ORTHO05D007856 2.3e-231 805.8 574 69.9
Migut.K00933 Erythranthe guttata HOM05D002544 ORTHO05D007856 3.0e-231 805.4 572 69.8
Rhsim10G0180300 Rhododendron simsii HOM05D002544 ORTHO05D007856 3.0e-231 805.4 571 69.0
Glyma.18G041900 Glycine max HOM05D002544 ORTHO05D007856 2.5e-230 802.4 572 68.7
CiPaw.03G074200 Carya illinoinensis HOM05D002544 ORTHO05D007856 5.6e-230 801.2 568 68.8
Lj4A258G27 Lonicera japonica HOM05D002544 ORTHO05D007856 1.2e-229 800.0 576 71.0
QL03p020295 Quercus lobata HOM05D002544 ORTHO05D007856 2.1e-229 799.3 571 69.7
Actinidia17196 Actinidia chinensis HOM05D002544 ORTHO05D007856 2.8e-229 798.9 573 68.9
MD17G1267200 Malus domestica HOM05D002544 ORTHO05D007856 2.3e-228 795.8 569 70.1
Lj6g0017134 Lotus japonicus HOM05D002544 ORTHO05D007856 6.8e-228 794.3 572 68.0
Lalb_Chr18g0053551 Lupinus albus HOM05D002544 ORTHO05D007856 1.2e-227 793.5 573 67.5
Atru.chr1.2033 Acer truncatum HOM05D002544 ORTHO05D007856 4.4e-227 791.6 572 68.7
Manes.02G078600 Manihot esculenta HOM05D002544 ORTHO05D007856 9.9e-227 790.4 572 67.8
VMungo1383G1931 Vigna mungo HOM05D002544 ORTHO05D007856 9.9e-227 790.4 572 67.3
Glyma.11G214700 Glycine max HOM05D002544 ORTHO05D007856 1.3e-226 790.0 572 67.8
DCAR_014158 Daucus carota HOM05D002544 ORTHO05D007856 8.4e-226 787.3 572 68.5
TAR622G0658 Trochodendron aralioides HOM05D002544 ORTHO05D007856 1.4e-225 786.6 572 68.4
RcHm_v2.0_Chr3g0492061 Rosa chinensis HOM05D002544 ORTHO05D007856 1.9e-225 786.2 572 68.7
TWI53G0412 Tripterygium wilfordii HOM05D002544 ORTHO05D007856 3.2e-225 785.4 572 70.1
Actinidia06481 Actinidia chinensis HOM05D002544 ORTHO05D007856 4.1e-225 785.0 629 63.4
vmacro20587 Vaccinium macrocarpon HOM05D002544 ORTHO05D007856 7.1e-225 784.3 597 65.5
Phvul.001G228700 Phaseolus vulgaris HOM05D002544 ORTHO05D007856 9.2e-225 783.9 572 67.5
Gohir.D05G289100 Gossypium hirsutum HOM05D002544 ORTHO05D007856 6.0e-224 781.2 572 68.7
Ca_17085_v3 Cicer arietinum L. HOM05D002544 ORTHO05D007856 7.8e-224 780.8 572 67.7
Thecc.10G105700 Theobroma cacao HOM05D002544 ORTHO05D007856 2.3e-223 779.2 572 68.5
PGR004G1819 Punica granatum HOM05D002544 ORTHO05D007856 3.9e-223 778.5 572 68.0
Haze_14286 Corylus avellana HOM05D002544 ORTHO05D007856 7.3e-222 774.2 583 66.2
arahy.Tifrunner.gnm1.ann1.644H52 Arachis hypogaea HOM05D002544 ORTHO05D007856 9.6e-222 773.9 573 65.6
Ciclev10000514m.g Citrus clementina HOM05D002544 ORTHO05D007856 9.6e-222 773.9 573 67.2
Gorai.009G304200 Gossypium raimondii HOM05D002544 ORTHO05D007856 4.7e-221 771.5 572 68.0
Gohir.A05G287900 Gossypium hirsutum HOM05D002544 ORTHO05D007856 6.2e-221 771.2 572 67.5
Nitab4.5_0006562g0020 Nicotiana tabacum HOM05D002544 ORTHO05D007856 6.2e-221 771.2 576 68.2
arahy.Tifrunner.gnm1.ann1.5E142I Arachis hypogaea HOM05D002544 ORTHO05D007856 8.1e-221 770.8 573 65.6
FAN19G2740 Fragaria x ananassa HOM05D002544 ORTHO05D007856 2.4e-220 769.2 572 66.6
SGA_v2.0_scaffold45G17141 Striga asiatica HOM05D002544 ORTHO05D007277 1.5e-219 766.5 592 65.4
CsaV3_3G017820 Cucumis sativus L. HOM05D002544 ORTHO05D007856 2.6e-219 765.8 572 67.0
FvH4_1g30060 Fragaria vesca HOM05D002544 ORTHO05D007856 4.4e-219 765.0 572 66.4
Medtr3g065110 Medicago truncatula HOM05D002544 ORTHO05D007856 5.8e-219 764.6 572 65.7
Potri.004G082900 Populus trichocarpa HOM05D002544 ORTHO05D007856 5.8e-219 764.6 572 65.9
Nn3g18419 Nelumbo nucifera HOM05D002544 ORTHO05D007856 8.4e-218 760.8 572 65.6
Peaxi162Scf00464g00433 Petunia axillaris HOM05D002544 ORTHO05D007856 1.1e-217 760.4 544 69.7
TPR.G23205 Trifolium pratense HOM05D002544 ORTHO05D007856 3.2e-217 758.8 576 65.1
HanXRQChr16g0532811 Helianthus annuus HOM05D002544 ORTHO05D007856 7.1e-217 757.7 575 66.3
PGSC0003DMG400013310 Solanum tuberosum HOM05D002544 ORTHO05D007856 1.0e-215 753.8 514 73.3
Duzib128G1814 Durio zibethinus HOM05D002544 ORTHO05D007856 1.7e-215 753.1 603 63.5
Sed0025118 Sechium edule HOM05D002544 ORTHO05D007856 3.0e-215 752.3 568 66.7
CANSAT25G3407 Cannabis sativa HOM05D002544 ORTHO05D007856 4.8e-213 745.0 571 64.4
Sabra04G0055200 Salix brachista HOM05D002544 ORTHO05D007856 8.1e-213 744.2 622 61.1
COL.COLO4_38545 Corchorus olitorius HOM05D002544 ORTHO05D007856 4.0e-212 741.9 619 62.5
Eucgr.F02879 Eucalyptus grandis HOM05D002544 ORTHO05D007856 9.0e-212 740.7 589 63.2
Cfa007785 Carpinus fangiana HOM05D002544 ORTHO05D007856 1.2e-211 740.3 554 66.4
AL5G33420 Arabidopsis lyrata HOM05D002544 ORTHO05D007856 1.3e-210 736.9 573 63.7
PSO063G6024 Papaver somniferum HOM05D002544 ORTHO05D007856 1.3e-210 736.9 572 63.3
ECA236G0457 Erigeron canadensis HOM05D002544 ORTHO05D007856 2.2e-210 736.1 552 67.2
Carub.0005s1906 Capsella rubella HOM05D002544 ORTHO05D007856 1.4e-209 733.4 573 63.2
Sp5g09650 Schrenkiella parvula HOM05D002544 ORTHO05D007856 5.4e-209 731.5 573 62.7
AT3G52640 Arabidopsis thaliana HOM05D002544 ORTHO05D007856 1.2e-208 730.3 573 62.7
PSO782G4267 Papaver somniferum HOM05D002544 ORTHO05D007856 1.2e-208 730.3 572 62.9
A04p06810 Brassica napus HOM05D002544 ORTHO05D007856 2.1e-208 729.6 572 62.6
Thhalv10010197m.g Eutrema salsugineum HOM05D002544 ORTHO05D007856 6.7e-207 724.5 573 61.6
C04p40360 Brassica napus HOM05D002544 ORTHO05D007856 1.3e-205 720.3 572 62.4
FAN28G1090 Fragaria x ananassa HOM05D002544 ORTHO05D007856 1.8e-204 716.5 570 63.7
THA.LOC104805637 Tarenaya hassleriana HOM05D002544 ORTHO05D007856 1.8e-204 716.5 606 58.9
Aqoxy3G04067 Aquilegia oxysepala HOM05D002544 ORTHO05D007856 2.4e-204 716.1 572 63.1
BraA04t16380Z Brassica rapa HOM05D002544 ORTHO05D007856 9.0e-204 714.1 652 56.4
BcaC02g09234 Brassica carinata HOM05D002544 ORTHO05D007856 2.0e-203 713.0 578 60.9
BcaB02g08559 Brassica carinata HOM05D002544 ORTHO05D007856 2.9e-202 709.1 573 60.9
Sc04g0005080 Simmondsia chinensis HOM05D002544 ORTHO05D007856 4.2e-201 705.3 572 62.2
Lsat_1_v5_gn_3_63981 Lactuca sativa HOM05D002544 ORTHO05D007856 5.5e-201 704.9 553 65.3
BolC4t25616H Brassica oleracea HOM05D002544 ORTHO05D007856 1.6e-200 703.4 602 59.1
Aa31LG10G7700 Aethionema arabicum HOM05D002544 ORTHO05D007856 7.9e-200 701.0 602 58.8
MBI13_g24909_MAGBIO Magnolia biondii HOM05D002544 ORTHO05D007856 1.1e-196 690.6 572 61.5
ClCG05G010690 Citrullus lanatus HOM05D002544 ORTHO05D007856 1.4e-196 690.3 625 58.4
ATR0118G015 Amborella trichopoda HOM05D002544 ORTHO05D007856 3.1e-196 689.1 573 61.6
EL10Ac2g03312 Beta vulgaris HOM05D002544 ORTHO05D007856 4.2e-193 678.7 572 60.1
Os02g0736500 Oryza sativa ssp. japonica HOM05D002544 ORTHO05D007856 3.5e-192 675.6 572 59.4
unitig_748.g8462 Utricularia gibba HOM05D002544 ORTHO05D007856 3.7e-189 665.6 586 59.4
Cpa.g.sc116.76 Carica papaya HOM05D002544 ORTHO05D007856 9.0e-188 661.0 479 66.6
AUR62040737 Chenopodium quinoa HOM05D002544 ORTHO05D007856 1.4e-185 653.7 572 58.7
Zm00001eb190390 Zea mays HOM05D002544 ORTHO05D007856 1.9e-185 653.3 572 57.5
Psat5g119600 Pisum sativum HOM05D002544 ORTHO05D007856 5.1e-183 645.2 484 65.7
Ah.10g032440 Amaranthus hybridus HOM05D002544 ORTHO05D007856 5.7e-182 641.7 603 56.6
SHI30114 Sapria himalayana HOM05D002544 ORTHO05D007856 9.7e-182 641.0 646 53.9
CARHR162460 Cardamine hirsuta HOM05D002544 ORTHO05D007856 6.3e-181 638.3 495 64.4
CDE05G1209 Ceratophyllum demersum HOM05D002544 ORTHO05D007856 5.3e-180 635.2 572 56.8
HPP92_026943 Vanilla planifolia HOM05D002544 ORTHO05D007856 2.2e-178 629.8 599 55.6
FAN26G1528 Fragaria x ananassa HOM05D002544 ORTHO05D007856 8.2e-173 611.3 543 58.7
AUR62037665 Chenopodium quinoa HOM05D002544 ORTHO05D007856 4.2e-169 599.0 572 55.4
Hma1.2p1_0158F.1_g070020 Hydrangea macrophylla HOM05D002544 ORTHO05D007856 3.8e-146 522.7 352 71.6
Mapoly0182s0008 Marchantia polymorpha HOM05D002544 ORTHO05D007856 5.5e-145 518.8 587 47.9
SMO115G0276 Selaginella moellendorffii HOM05D002544 ORTHO05D007856 9.5e-145 518.1 589 47.2
AagrBONN_evm.TU.Sc2ySwM_228.3612 Anthoceros agrestis HOM05D002544 ORTHO05D007856 4.4e-126 456.1 601 43.1
QL02p059469 Quercus lobata HOM05D002544 ORTHO05D007856 4.7e-120 436.0 320 66.2
Pp3c25_11440 Physcomitrium patens HOM05D002544 ORTHO05D007856 3.2e-108 396.7 481 47.4
Lj4C412G0 Lonicera japonica HOM05D002544 ORTHO05D007856 2.6e-94 350.5 367 54.5
SEGI_34556 Sequoiadendron giganteum HOM05D002544 ORTHO05D007856 4.6e-91 339.7 304 54.9
Hund13079 Selenicereus undatus HOM05D002544 ORTHO05D007856 1.4e-84 318.2 355 48.7
HPP92_021312 Vanilla planifolia HOM05D002544 ORTHO05D007856 5.7e-73 279.6 239 61.5
Cre06.g294400 Chlamydomonas reinhardtii HOM05D002544 ORTHO05D007856 1.4e-66 258.5 596 32.2
Zm00001eb382220 Zea mays HOM05D002544 ORTHO05D007856 1.2e-54 218.8 269 47.6
CBR_g26303 Chara braunii HOM05D002544 ORTHO05D000002 8.8e-50 202.6 324 35.8
MCO14G034 Micromonas commoda HOM05D002544 ORTHO05D007856 7.2e-36 156.4 637 25.7
Zm00001eb289130 Zea mays HOM05D002544 ORTHO05D007856 2.0e-33 148.3 115 64.3
CBR_g26304 Chara braunii HOM05D002544 ORTHO05D007856 9.8e-25 119.4 115 60.0
Hma1.2p1_0594F.1_g185860 Hydrangea macrophylla HOM05D006828 ORTHO05D008312 5.6e-20 103.6 73 64.4
CARHR162470 Cardamine hirsuta HOM05D002544 ORTHO05D007856 3.4e-17 94.4 80 53.8
Haze_22892 Corylus avellana HOM05D002544 ORTHO05D007856 1.4e-15 89.0 102 44.1
FAN12G0356 Fragaria x ananassa HOM05D002544 ORTHO05D007856 1.1e-12 79.3 65 61.5
FvH4_4g11392 Fragaria vesca HOM05D000005 ORTHO05D000012 1.5e-12 79.0 49 73.5
Zm00001eb280470 Zea mays HOM05D003723 ORTHO05D004306 1.5e-12 79.0 64 62.5
FAN02G2717 Fragaria x ananassa HOM05D002544 ORTHO05D007856 1.9e-12 78.6 48 75.0
CSS0043407 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D033931 1.2e-11 75.9 63 57.1
CSS0029470 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D033931 2.8e-11 74.7 63 57.1
FAN02G1722 Fragaria x ananassa HOM05D002544 ORTHO05D007856 3.6e-11 74.3 48 72.9
HPP92_021313 Vanilla planifolia HOM05D002544 ORTHO05D007856 3.6e-11 74.3 65 55.4
C04p40260 Brassica napus HOM05D002544 ORTHO05D007856 6.2e-11 73.6 62 53.2
BolC4t25605H Brassica oleracea HOM05D002544 ORTHO05D007856 6.2e-11 73.6 62 53.2
CBR_g37928 Chara braunii HOM05D000601 ORTHO05D000301 1.2e-09 69.3 98 39.8
Gohir.A10G100500 Gossypium hirsutum HOM05D002544 ORTHO05D033931 1.5e-09 68.9 42 76.2
SGA_v2.0_scaffold17G07933 Striga asiatica HOM05D002544 ORTHO05D399483 3.7e-08 64.3 36 75.0


User provided reference genes

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